Wall clock time and date at job start Tue Mar 31 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46828 * 2 1 4 4 N 1.46909 * 109.46856 * 174.86107 * 3 2 1 5 5 C 1.46902 * 110.99669 * 199.77710 * 4 3 2 6 6 C 1.50700 * 109.47529 * 66.04814 * 5 4 3 7 7 H 1.07996 * 119.99643 * 359.97438 * 6 5 4 8 8 C 1.37870 * 119.99892 * 179.97438 * 6 5 4 9 9 N 1.31505 * 120.00405 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99886 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46968 * 59.99744 * 10 8 6 12 12 H 1.48496 * 109.47393 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47115 * 300.00289 * 10 8 6 14 14 C 1.46894 * 110.99530 * 75.82438 * 4 3 2 15 15 C 1.50706 * 109.46790 * 199.49720 * 14 4 3 16 16 N 1.30249 * 126.09498 * 265.15811 * 15 14 4 17 17 N 1.39875 * 110.07876 * 180.14822 * 16 15 14 18 18 H 0.97001 * 125.47163 * 179.87128 * 17 16 15 19 19 C 1.37121 * 109.06349 * 359.59778 * 17 16 15 20 20 C 1.39276 * 133.81668 * 180.23497 * 19 17 16 21 21 C 1.36580 * 119.88497 * 180.02562 * 20 19 17 22 22 C 1.39143 * 120.79318 * 359.97438 * 21 20 19 23 23 F 1.35109 * 119.71412 * 179.97438 * 22 21 20 24 24 C 1.36645 * 120.57709 * 0.02562 * 22 21 20 25 25 C 1.39970 * 119.61525 * 0.02562 * 24 22 21 26 26 H 1.09005 * 109.47151 * 60.00428 * 1 2 3 27 27 H 1.09008 * 109.46709 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47273 * 299.99842 * 1 2 3 29 29 H 1.08997 * 109.47351 * 239.99647 * 2 1 3 30 30 H 1.09000 * 109.46804 * 119.99872 * 2 1 3 31 31 H 1.09003 * 109.47184 * 54.86759 * 3 2 1 32 32 H 1.08994 * 109.47450 * 294.86114 * 3 2 1 33 33 H 1.08999 * 109.46722 * 186.05029 * 5 4 3 34 34 H 1.09004 * 109.46866 * 306.04474 * 5 4 3 35 35 H 0.97000 * 120.00722 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47151 * 79.49932 * 14 4 3 37 37 H 1.09002 * 109.47422 * 319.49511 * 14 4 3 38 38 H 1.08005 * 120.06099 * 359.97276 * 20 19 17 39 39 H 1.08000 * 119.60509 * 180.02562 * 21 20 19 40 40 H 1.08000 * 120.18999 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5038 1.4444 0.1241 5 6 3.9907 2.7489 0.5922 6 6 3.5113 2.9882 2.0007 7 1 2.9051 2.2457 2.4982 8 6 3.8465 4.1551 2.6541 9 7 4.5842 5.0594 2.0481 10 14 3.2516 4.4520 4.3998 11 1 3.7706 3.3813 5.2884 12 1 3.7450 5.7701 4.8734 13 1 1.7669 4.4402 4.4255 14 6 4.1401 1.0697 -1.1458 15 6 5.5541 0.6184 -0.8850 16 7 6.6225 1.3595 -0.9611 17 7 7.7566 0.6000 -0.6553 18 1 8.6689 0.9294 -0.6461 19 6 7.3711 -0.6833 -0.3643 20 6 8.0593 -1.8371 0.0031 21 6 7.3727 -2.9956 0.2306 22 6 5.9881 -3.0404 0.1004 23 9 5.3310 -4.1984 0.3302 24 6 5.2872 -1.9238 -0.2587 25 6 5.9701 -0.7256 -0.4979 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6034 1.9822 0.8405 32 1 1.7537 1.9291 -0.9324 33 1 5.0805 2.7582 0.5728 34 1 3.6090 3.5345 -0.0600 35 1 4.8204 5.8802 2.5079 36 1 4.1508 1.9302 -1.8146 37 1 3.5788 0.2574 -1.6077 38 1 9.1341 -1.8159 0.1071 39 1 7.9109 -3.8875 0.5156 40 1 4.2125 -1.9655 -0.3575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144199404.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:33 Heat of formation + Delta-G solvation = 15.377250 kcal Electronic energy + Delta-G solvation = -23104.242044 eV Core-core repulsion = 19640.585337 eV Total energy + Delta-G solvation = -3463.656707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.73044 -42.27233 -38.83558 -37.82077 -34.94763 -34.36425 -33.14271 -31.14761 -30.27403 -29.32893 -27.65758 -25.85912 -24.32112 -23.20379 -23.08271 -21.81285 -20.68523 -19.02495 -18.64762 -18.45466 -17.24058 -16.79445 -16.64672 -16.36331 -16.28416 -16.03665 -15.43081 -15.29501 -15.02371 -14.69717 -14.27887 -13.97822 -13.93092 -13.69203 -13.54997 -13.20977 -12.78411 -12.72472 -12.61824 -12.48774 -12.39866 -12.17824 -11.94840 -11.74511 -11.58003 -11.38490 -11.27874 -11.00490 -10.60414 -9.74486 -9.05335 -8.87727 -8.19282 -6.28904 -0.13755 0.33510 1.36413 1.38978 1.41609 1.49380 1.74022 2.39324 2.61772 3.12950 3.24605 3.33133 3.56009 3.58084 3.73442 4.06248 4.17997 4.32088 4.34539 4.35994 4.51028 4.53346 4.66206 4.75117 4.79653 4.98321 5.01323 5.03941 5.14181 5.18379 5.23520 5.24528 5.34497 5.35771 5.48898 5.57398 5.65672 5.85662 6.07319 6.33750 6.39438 6.60108 6.62431 6.87495 7.39844 8.91535 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012564 B = 0.005250 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.039893 B = 5332.113886 C = 6253.251294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C 0.062 3.938 4 N -0.533 5.533 5 C 0.210 3.790 6 C -0.520 4.520 7 H 0.063 0.937 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.264 1.264 14 C 0.128 3.872 15 C 0.114 3.886 16 N -0.274 5.274 17 N -0.502 5.502 18 H 0.451 0.549 19 C 0.107 3.893 20 C -0.105 4.105 21 C -0.095 4.095 22 C 0.047 3.953 23 F -0.145 7.145 24 C -0.075 4.075 25 C -0.159 4.159 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.028 0.972 33 H 0.008 0.992 34 H -0.042 1.042 35 H 0.263 0.737 36 H 0.037 0.963 37 H 0.119 0.881 38 H 0.171 0.829 39 H 0.175 0.825 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -16.918 -6.405 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.066 4.066 4 N -0.258 5.258 5 C 0.084 3.916 6 C -0.558 4.558 7 H 0.081 0.919 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.188 1.188 14 C -0.002 4.002 15 C -0.064 4.064 16 N -0.089 5.089 17 N -0.218 5.218 18 H 0.298 0.702 19 C -0.010 4.010 20 C -0.127 4.127 21 C -0.116 4.116 22 C 0.026 3.974 23 F -0.124 7.124 24 C -0.096 4.096 25 C -0.167 4.167 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.026 0.974 34 H -0.024 1.024 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.137 0.863 38 H 0.189 0.811 39 H 0.192 0.808 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.675 -15.933 -6.289 17.519 hybrid contribution -0.155 0.879 0.473 1.010 sum 3.520 -15.055 -5.815 16.518 Atomic orbital electron populations 1.21699 0.94500 1.02338 1.01711 1.21482 0.96187 0.94825 1.02249 1.22119 0.86537 0.98116 0.99833 1.61972 1.06304 1.31539 1.25998 1.19372 0.94533 0.83676 0.94022 1.21421 1.32106 1.02748 0.99516 0.91932 1.25885 0.95390 0.95776 1.02588 1.70100 1.38766 1.09256 1.39347 0.85506 0.79114 0.77183 0.79253 1.19680 1.20907 1.18845 1.20519 0.87398 1.00483 0.91757 1.23559 0.95025 0.90234 0.97594 1.76623 0.93568 1.19525 1.19175 1.45884 1.08352 1.05413 1.62170 0.70244 1.19304 0.94135 0.87932 0.99596 1.20017 1.01555 0.88239 1.02890 1.21003 0.91618 0.99894 0.99094 1.17155 0.91205 0.81887 1.07133 1.91478 1.81425 1.46657 1.92850 1.20337 1.01171 0.89749 0.98341 1.19561 0.92894 0.94112 1.10123 0.92353 0.91038 0.93496 0.91025 0.92322 0.92047 0.95390 0.97411 1.02425 0.92873 0.94458 0.86344 0.81109 0.80782 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.91 71.98 0.71 -2.66 16 2 C -0.11 -3.10 5.98 30.59 0.18 -2.91 16 3 C 0.06 2.30 4.79 86.30 0.41 2.71 16 4 N -0.53 -23.03 4.35 -905.34 -3.94 -26.97 16 5 C 0.21 11.55 4.55 85.56 0.39 11.94 16 6 C -0.52 -30.14 8.23 25.60 0.21 -29.93 16 7 H 0.06 3.55 7.31 -2.91 -0.02 3.53 16 8 C 0.00 0.08 5.46 84.65 0.46 0.55 16 9 N -0.93 -58.00 13.28 21.44 0.28 -57.71 16 10 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 11 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 14 C 0.13 4.70 5.41 85.56 0.46 5.16 16 15 C 0.11 4.30 6.31 44.79 0.28 4.58 16 16 N -0.27 -10.82 12.07 -43.69 -0.53 -11.35 16 17 N -0.50 -15.36 7.37 -51.51 -0.38 -15.74 16 18 H 0.45 10.48 8.96 -213.46 -1.91 8.57 16 19 C 0.11 3.04 7.34 39.19 0.29 3.33 16 20 C -0.11 -2.09 10.03 22.13 0.22 -1.87 16 21 C -0.10 -1.81 9.94 22.10 0.22 -1.59 16 22 C 0.05 1.14 7.24 22.11 0.16 1.30 16 23 F -0.15 -3.54 17.25 44.97 0.78 -2.76 16 24 C -0.07 -2.09 10.03 22.32 0.22 -1.86 16 25 C -0.16 -5.15 6.33 -20.25 -0.13 -5.28 16 26 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.73 6.90 -2.39 -0.02 1.72 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.63 6.58 -2.39 -0.02 2.61 16 32 H 0.03 0.99 8.00 -2.39 -0.02 0.97 16 33 H 0.01 0.47 7.04 -2.39 -0.02 0.45 16 34 H -0.04 -2.51 8.12 -2.38 -0.02 -2.53 16 35 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 36 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 37 H 0.12 3.43 6.57 -2.39 -0.02 3.42 16 38 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 39 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -72.29 339.25 1.49 -70.80 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -0.85 Total: 12.86 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.10 Total: -16.52 kcal Atomic # 7 Polarization: -107.21 SS G_CDS: -4.56 Total: -111.77 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -72.29 1.49 -70.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144199404.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.175 kcal (2) G-P(sol) polarization free energy of solvation -72.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds