Wall clock time and date at job start Tue Mar 31 2020 06:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47280 * 2 1 4 4 C 1.53002 * 109.47427 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46910 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00044 * 269.99482 * 5 4 3 7 7 H 1.07998 * 119.99961 * 323.67774 * 6 5 4 8 8 C 1.38810 * 120.00019 * 143.67520 * 6 5 4 9 9 N 1.31616 * 120.00161 * 156.19100 * 8 6 5 10 10 Si 1.86799 * 119.99862 * 336.18725 * 8 6 5 11 11 H 1.48497 * 109.47422 * 95.52834 * 10 8 6 12 12 H 1.48505 * 109.47249 * 215.52973 * 10 8 6 13 13 H 1.48507 * 109.47274 * 335.52651 * 10 8 6 14 14 C 1.46508 * 119.99961 * 90.00206 * 5 4 3 15 15 C 1.50694 * 109.47129 * 85.49644 * 14 5 4 16 16 N 1.30254 * 126.09996 * 268.54118 * 15 14 5 17 17 N 1.39875 * 110.08514 * 180.14605 * 16 15 14 18 18 H 0.96997 * 125.47132 * 179.85775 * 17 16 15 19 19 C 1.37128 * 109.06145 * 359.59933 * 17 16 15 20 20 C 1.39277 * 133.81332 * 180.22958 * 19 17 16 21 21 C 1.36583 * 119.87902 * 179.97438 * 20 19 17 22 22 C 1.39146 * 120.79523 * 0.02562 * 21 20 19 23 23 F 1.35107 * 119.71052 * 179.97438 * 22 21 20 24 24 C 1.36637 * 120.57654 * 359.97438 * 22 21 20 25 25 C 1.39970 * 119.61802 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47418 * 299.99946 * 1 2 3 28 28 H 1.08997 * 109.47208 * 59.99939 * 1 2 3 29 29 H 1.08997 * 109.47234 * 239.99337 * 2 1 3 30 30 H 1.09001 * 109.47049 * 119.99579 * 2 1 3 31 31 H 1.09006 * 109.47261 * 60.00041 * 3 2 1 32 32 H 1.08997 * 109.47049 * 300.00158 * 3 2 1 33 33 H 1.08996 * 109.46989 * 59.99794 * 4 3 2 34 34 H 1.09000 * 109.46453 * 299.99778 * 4 3 2 35 35 H 0.97007 * 119.99779 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46989 * 325.49376 * 14 5 4 37 37 H 1.09007 * 109.46854 * 205.49399 * 14 5 4 38 38 H 1.08001 * 120.05948 * 359.97185 * 20 19 17 39 39 H 1.08009 * 119.60082 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.19285 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.2860 3.4689 -1.1875 7 1 4.6805 2.9232 -2.0318 8 6 4.0098 4.8242 -1.3046 9 7 4.6272 5.5452 -2.2163 10 14 2.7617 5.6246 -0.1684 11 1 3.4658 6.2409 0.9847 12 1 2.0167 6.6727 -0.9112 13 1 1.8102 4.5964 0.3246 14 6 4.3029 3.5147 1.2672 15 6 5.6901 3.1885 1.7575 16 7 6.0121 2.2091 2.5535 17 7 7.3902 2.2183 2.7932 18 1 7.8678 1.5888 3.3558 19 6 7.9583 3.2566 2.1007 20 6 9.2621 3.7283 1.9681 21 6 9.5154 4.8162 1.1822 22 6 8.4845 5.4641 0.5088 23 9 8.7599 6.5387 -0.2625 24 6 7.1961 5.0231 0.6206 25 6 6.9130 3.9100 1.4205 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9286 0.8892 35 1 4.4338 6.4923 -2.2984 36 1 3.5705 3.1887 2.0057 37 1 4.2141 4.5908 1.1178 38 1 10.0712 3.2347 2.4859 39 1 10.5282 5.1780 1.0823 40 1 6.4007 5.5305 0.0948 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144202855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:18 Heat of formation + Delta-G solvation = 51.151721 kcal Electronic energy + Delta-G solvation = -23431.988589 eV Core-core repulsion = 19969.883179 eV Total energy + Delta-G solvation = -3462.105409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -48.27722 -40.82426 -36.86012 -36.34819 -34.24687 -32.23817 -31.52735 -29.78993 -28.94301 -28.21315 -26.15513 -24.09702 -22.97778 -21.82063 -21.24500 -20.43268 -19.43101 -17.73128 -17.15836 -16.75879 -15.81491 -15.35081 -15.13859 -14.88505 -14.79272 -14.49283 -13.92020 -13.84301 -13.55230 -13.09901 -12.91775 -12.86877 -12.42631 -12.31290 -12.13014 -11.98815 -11.34177 -11.15685 -10.96866 -10.79199 -10.70813 -10.58365 -10.45274 -10.33901 -9.98326 -9.90999 -9.74326 -9.47294 -8.60581 -8.36514 -7.49954 -7.00569 -6.06663 -3.46466 1.20385 1.69678 2.84768 3.04328 3.24972 3.44230 3.47672 3.99208 4.44355 4.68310 4.83775 4.91233 5.04179 5.13844 5.20757 5.32271 5.36639 5.51893 5.56076 5.58329 5.90882 5.94556 6.02656 6.13131 6.17600 6.23630 6.29741 6.31023 6.32261 6.37635 6.47889 6.52663 6.57271 6.60926 6.89779 6.90376 7.07898 7.23878 7.61741 7.94544 8.04892 8.32583 8.87487 9.61553 10.00956 11.07446 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.006147 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.777878 B = 4554.229671 C = 5853.275371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.150 3.850 5 N -0.587 5.587 6 C -0.267 4.267 7 H 0.081 0.919 8 C 0.042 3.958 9 N -0.886 5.886 10 Si 0.855 3.145 11 H -0.282 1.282 12 H -0.297 1.297 13 H -0.262 1.262 14 C 0.203 3.797 15 C 0.116 3.884 16 N -0.262 5.262 17 N -0.520 5.520 18 H 0.433 0.567 19 C 0.114 3.886 20 C -0.129 4.129 21 C -0.103 4.103 22 C 0.045 3.955 23 F -0.143 7.143 24 C -0.044 4.044 25 C -0.134 4.134 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.265 0.735 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 -5.301 8.949 11.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.178 4.178 4 C 0.025 3.975 5 N -0.308 5.308 6 C -0.396 4.396 7 H 0.098 0.902 8 C -0.160 4.160 9 N -0.526 5.526 10 Si 0.684 3.316 11 H -0.210 1.210 12 H -0.225 1.225 13 H -0.186 1.186 14 C 0.074 3.926 15 C -0.065 4.065 16 N -0.077 5.077 17 N -0.234 5.234 18 H 0.276 0.724 19 C -0.002 4.002 20 C -0.152 4.152 21 C -0.124 4.124 22 C 0.024 3.976 23 F -0.122 7.122 24 C -0.065 4.065 25 C -0.142 4.142 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.146 0.854 39 H 0.153 0.847 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.388 -6.121 9.480 11.782 hybrid contribution 0.085 1.047 0.204 1.070 sum 3.473 -5.074 9.684 11.471 Atomic orbital electron populations 1.21765 0.96685 1.00622 1.01641 1.21490 0.95144 0.98107 1.01268 1.22180 0.98789 0.94812 1.02033 1.20952 0.91354 0.85758 0.99478 1.44117 1.73629 1.11859 1.01206 1.18780 1.38220 0.92680 0.89908 0.90158 1.25407 0.97559 0.96602 0.96420 1.69899 1.39918 1.06892 1.35929 0.87264 0.84430 0.79413 0.80496 1.21041 1.22491 1.18593 1.19951 0.86132 0.98059 0.88471 1.25201 0.98166 0.90902 0.92238 1.76568 0.91133 1.21085 1.18943 1.45892 1.04881 1.27665 1.44916 0.72365 1.18860 0.94451 0.91254 0.95651 1.19448 0.92988 0.98942 1.03788 1.20574 0.98765 0.95889 0.97175 1.16985 0.93550 0.89080 0.97967 1.91478 1.94401 1.52896 1.73440 1.20623 0.96183 0.94564 0.95132 1.19526 0.92512 0.99174 1.03016 0.93525 0.93152 0.92868 0.92381 0.92705 0.93082 0.91588 0.93038 0.93881 0.92480 0.92021 0.90239 0.85389 0.84724 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.15 0.37 -1.53 16 2 C -0.12 -1.73 5.93 -26.74 -0.16 -1.89 16 3 C -0.14 -2.44 5.54 -26.73 -0.15 -2.59 16 4 C 0.15 2.93 5.69 -4.04 -0.02 2.91 16 5 N -0.59 -13.30 2.08 -174.61 -0.36 -13.67 16 6 C -0.27 -7.00 9.91 -15.06 -0.15 -7.15 16 7 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 8 C 0.04 1.11 5.08 -17.43 -0.09 1.03 16 9 N -0.89 -25.27 13.97 55.49 0.78 -24.49 16 10 Si 0.86 20.53 25.09 -169.99 -4.27 16.27 16 11 H -0.28 -6.56 6.66 56.52 0.38 -6.19 16 12 H -0.30 -7.36 7.11 56.52 0.40 -6.95 16 13 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.20 4.33 4.96 -5.19 -0.03 4.30 16 15 C 0.12 2.38 7.01 -80.19 -0.56 1.81 16 16 N -0.26 -4.91 12.55 34.84 0.44 -4.47 16 17 N -0.52 -8.15 7.37 32.37 0.24 -7.91 16 18 H 0.43 5.01 8.96 -182.77 -1.64 3.38 16 19 C 0.11 1.92 7.34 -84.15 -0.62 1.31 16 20 C -0.13 -1.80 10.03 -39.79 -0.40 -2.20 16 21 C -0.10 -1.51 9.94 -39.84 -0.40 -1.91 16 22 C 0.04 0.83 7.24 -39.82 -0.29 0.54 16 23 F -0.14 -2.72 17.25 2.25 0.04 -2.69 16 24 C -0.04 -0.91 10.03 -39.51 -0.40 -1.31 16 25 C -0.13 -2.70 6.33 -105.21 -0.67 -3.37 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.05 1.02 8.04 -51.93 -0.42 0.61 16 34 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 37 H 0.08 1.81 3.45 -51.93 -0.18 1.63 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.15 3.53 7.88 -52.48 -0.41 3.12 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -29.01 338.10 -8.47 -37.48 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.88 Total: 4.44 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.55 Total: -10.06 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 1.09 Total: -50.54 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.27 Total: 16.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.01 -8.47 -37.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144202855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.628 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds