Wall clock time and date at job start Tue Mar 31 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47280 * 2 1 4 4 C 1.53002 * 109.47427 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46910 * 179.97438 * 4 3 2 6 6 C 1.36938 * 120.00044 * 269.99482 * 5 4 3 7 7 H 1.07998 * 119.99961 * 323.67774 * 6 5 4 8 8 C 1.38810 * 120.00019 * 143.67520 * 6 5 4 9 9 N 1.31616 * 120.00161 * 156.19100 * 8 6 5 10 10 Si 1.86799 * 119.99862 * 336.18725 * 8 6 5 11 11 H 1.48497 * 109.47422 * 95.52834 * 10 8 6 12 12 H 1.48505 * 109.47249 * 215.52973 * 10 8 6 13 13 H 1.48507 * 109.47274 * 335.52651 * 10 8 6 14 14 C 1.46508 * 119.99961 * 90.00206 * 5 4 3 15 15 C 1.50694 * 109.47129 * 85.49644 * 14 5 4 16 16 N 1.30254 * 126.09996 * 268.54118 * 15 14 5 17 17 N 1.39875 * 110.08514 * 180.14605 * 16 15 14 18 18 H 0.96997 * 125.47132 * 179.85775 * 17 16 15 19 19 C 1.37128 * 109.06145 * 359.59933 * 17 16 15 20 20 C 1.39277 * 133.81332 * 180.22958 * 19 17 16 21 21 C 1.36583 * 119.87902 * 179.97438 * 20 19 17 22 22 C 1.39146 * 120.79523 * 0.02562 * 21 20 19 23 23 F 1.35107 * 119.71052 * 179.97438 * 22 21 20 24 24 C 1.36637 * 120.57654 * 359.97438 * 22 21 20 25 25 C 1.39970 * 119.61802 * 0.02562 * 24 22 21 26 26 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47418 * 299.99946 * 1 2 3 28 28 H 1.08997 * 109.47208 * 59.99939 * 1 2 3 29 29 H 1.08997 * 109.47234 * 239.99337 * 2 1 3 30 30 H 1.09001 * 109.47049 * 119.99579 * 2 1 3 31 31 H 1.09006 * 109.47261 * 60.00041 * 3 2 1 32 32 H 1.08997 * 109.47049 * 300.00158 * 3 2 1 33 33 H 1.08996 * 109.46989 * 59.99794 * 4 3 2 34 34 H 1.09000 * 109.46453 * 299.99778 * 4 3 2 35 35 H 0.97007 * 119.99779 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.46989 * 325.49376 * 14 5 4 37 37 H 1.09007 * 109.46854 * 205.49399 * 14 5 4 38 38 H 1.08001 * 120.05948 * 359.97185 * 20 19 17 39 39 H 1.08009 * 119.60082 * 180.02562 * 21 20 19 40 40 H 1.08006 * 120.19285 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 -0.0013 6 6 4.2860 3.4689 -1.1875 7 1 4.6805 2.9232 -2.0318 8 6 4.0098 4.8242 -1.3046 9 7 4.6272 5.5452 -2.2163 10 14 2.7617 5.6246 -0.1684 11 1 3.4658 6.2409 0.9847 12 1 2.0167 6.6727 -0.9112 13 1 1.8102 4.5964 0.3246 14 6 4.3029 3.5147 1.2672 15 6 5.6901 3.1885 1.7575 16 7 6.0121 2.2091 2.5535 17 7 7.3902 2.2183 2.7932 18 1 7.8678 1.5888 3.3558 19 6 7.9583 3.2566 2.1007 20 6 9.2621 3.7283 1.9681 21 6 9.5154 4.8162 1.1822 22 6 8.4845 5.4641 0.5088 23 9 8.7599 6.5387 -0.2625 24 6 7.1961 5.0231 0.6206 25 6 6.9130 3.9100 1.4205 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 3.9329 0.9288 -0.8908 34 1 3.9336 0.9286 0.8892 35 1 4.4338 6.4923 -2.2984 36 1 3.5705 3.1887 2.0057 37 1 4.2141 4.5908 1.1178 38 1 10.0712 3.2347 2.4859 39 1 10.5282 5.1780 1.0823 40 1 6.4007 5.5305 0.0948 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144202855.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:15 Heat of formation + Delta-G solvation = 34.489375 kcal Electronic energy + Delta-G solvation = -23432.711122 eV Core-core repulsion = 19969.883179 eV Total energy + Delta-G solvation = -3462.827943 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.75399 -42.21865 -38.45706 -37.77036 -35.64193 -33.96256 -33.20980 -31.16008 -30.34231 -29.65805 -27.89272 -25.72728 -24.31850 -23.18469 -22.74508 -21.85651 -21.03419 -19.14874 -18.66677 -18.51164 -17.27419 -17.14086 -16.61059 -16.33940 -16.22611 -15.96052 -15.50610 -15.28602 -14.91791 -14.62336 -14.47134 -14.31241 -14.15820 -13.73018 -13.55296 -13.39490 -12.92596 -12.71055 -12.49106 -12.24348 -12.18775 -12.17576 -11.90995 -11.74673 -11.65762 -11.49770 -11.28917 -11.04068 -10.63791 -9.71367 -8.92769 -8.83181 -8.17511 -5.54638 -0.14978 0.31802 1.27720 1.37538 1.44834 1.51629 1.77548 2.41608 2.61206 3.08584 3.32484 3.38109 3.54979 3.58954 3.72688 4.08024 4.16067 4.23806 4.33007 4.40909 4.47854 4.54419 4.56276 4.62337 4.82639 4.86138 4.99411 5.02564 5.05609 5.08170 5.12791 5.18925 5.22059 5.38631 5.40694 5.49662 5.61272 5.83944 5.94002 6.18910 6.41831 6.65948 6.93644 7.59885 8.02391 9.00542 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.006147 C = 0.004782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.777878 B = 4554.229671 C = 5853.275371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.130 4.130 4 C 0.151 3.849 5 N -0.597 5.597 6 C -0.253 4.253 7 H 0.039 0.961 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.910 3.090 11 H -0.275 1.275 12 H -0.307 1.307 13 H -0.248 1.248 14 C 0.204 3.796 15 C 0.090 3.910 16 N -0.258 5.258 17 N -0.497 5.497 18 H 0.454 0.546 19 C 0.114 3.886 20 C -0.101 4.101 21 C -0.093 4.093 22 C 0.036 3.964 23 F -0.153 7.153 24 C -0.082 4.082 25 C -0.167 4.167 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.045 0.955 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.057 0.943 35 H 0.262 0.738 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.184 0.816 39 H 0.178 0.822 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.264 -7.206 11.840 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.170 4.170 4 C 0.027 3.973 5 N -0.319 5.319 6 C -0.383 4.383 7 H 0.057 0.943 8 C -0.197 4.197 9 N -0.574 5.574 10 Si 0.738 3.262 11 H -0.202 1.202 12 H -0.235 1.235 13 H -0.171 1.171 14 C 0.076 3.924 15 C -0.090 4.090 16 N -0.074 5.074 17 N -0.214 5.214 18 H 0.303 0.697 19 C -0.003 4.003 20 C -0.122 4.122 21 C -0.114 4.114 22 C 0.016 3.984 23 F -0.132 7.132 24 C -0.103 4.103 25 C -0.176 4.176 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.201 0.799 39 H 0.196 0.804 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.834 -8.072 12.418 15.580 hybrid contribution -0.188 1.546 -0.643 1.685 sum 4.646 -6.527 11.775 14.242 Atomic orbital electron populations 1.21746 0.95266 1.02021 1.01491 1.21441 0.96353 0.95507 1.02108 1.22054 0.97082 0.97136 1.00713 1.21024 0.92719 0.84047 0.99556 1.44155 1.74505 1.12711 1.00544 1.18492 1.36904 0.92530 0.90395 0.94305 1.25806 0.98861 0.97065 0.97948 1.70009 1.41782 1.06989 1.38604 0.86363 0.82238 0.78554 0.79023 1.20179 1.23549 1.17117 1.19800 0.87681 0.96826 0.88086 1.24843 0.97875 0.92270 0.94025 1.76438 0.92963 1.19970 1.18060 1.45818 1.03796 1.27487 1.44262 0.69745 1.19127 0.94951 0.91005 0.95178 1.20053 0.92824 0.97509 1.01821 1.20998 0.99445 0.95295 0.95663 1.17356 0.93838 0.89037 0.98190 1.91447 1.94371 1.53531 1.73890 1.20403 0.96469 0.96193 0.97267 1.19673 0.93719 0.99822 1.04348 0.91353 0.92853 0.93535 0.92168 0.91228 0.93154 0.94068 0.94147 0.92432 0.92858 0.90082 0.92222 0.79869 0.80442 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.12 -3.10 5.93 30.59 0.18 -2.92 16 3 C -0.13 -4.54 5.54 30.59 0.17 -4.37 16 4 C 0.15 5.93 5.69 86.38 0.49 6.42 16 5 N -0.60 -27.79 2.08 -706.34 -1.47 -29.26 16 6 C -0.25 -14.05 9.91 84.03 0.83 -13.22 16 7 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 8 C 0.00 0.07 5.08 84.86 0.43 0.50 16 9 N -0.93 -56.60 13.97 21.65 0.30 -56.30 16 10 Si 0.91 44.35 25.09 68.60 1.72 46.08 16 11 H -0.27 -12.88 6.66 99.48 0.66 -12.22 16 12 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 13 H -0.25 -11.36 7.11 99.48 0.71 -10.65 16 14 C 0.20 8.82 4.96 85.63 0.42 9.24 16 15 C 0.09 3.67 7.01 44.78 0.31 3.98 16 16 N -0.26 -9.17 12.55 -43.69 -0.55 -9.72 16 17 N -0.50 -13.86 7.37 -51.50 -0.38 -14.24 16 18 H 0.45 8.43 8.96 -213.47 -1.91 6.52 16 19 C 0.11 3.52 7.34 39.19 0.29 3.81 16 20 C -0.10 -2.30 10.03 22.13 0.22 -2.08 16 21 C -0.09 -2.39 9.94 22.10 0.22 -2.17 16 22 C 0.04 1.33 7.24 22.11 0.16 1.49 16 23 F -0.15 -5.95 17.25 44.97 0.78 -5.17 16 24 C -0.08 -3.54 10.03 22.32 0.22 -3.32 16 25 C -0.17 -6.75 6.33 -20.24 -0.13 -6.88 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.20 8.14 -2.38 -0.02 1.19 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 34 H 0.06 2.08 8.07 -2.39 -0.02 2.06 16 35 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 36 H 0.08 3.10 8.11 -2.39 -0.02 3.08 16 37 H 0.06 2.80 3.45 -2.38 -0.01 2.79 16 38 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 39 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.11 5.56 7.88 -2.91 -0.02 5.54 16 Total: -1.00 -68.38 338.10 4.04 -64.34 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -0.90 Total: 16.52 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 4.54 Total: -12.24 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -2.09 Total: -109.52 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.78 Total: -5.17 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.72 Total: 46.08 kcal Total: -68.38 4.04 -64.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144202855.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.829 kcal (2) G-P(sol) polarization free energy of solvation -68.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds