Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46811 * 2 1 4 4 C 1.53003 * 109.46811 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47321 * 179.97438 * 4 3 2 6 6 C 1.36960 * 119.99851 * 264.88151 * 5 4 3 7 7 H 1.07997 * 119.99742 * 124.99273 * 6 5 4 8 8 C 1.38952 * 120.00156 * 304.98187 * 6 5 4 9 9 N 1.31432 * 119.99947 * 4.64149 * 8 6 5 10 10 Si 1.86805 * 120.00292 * 184.63592 * 8 6 5 11 11 H 1.48498 * 109.46857 * 90.00213 * 10 8 6 12 12 H 1.48490 * 109.47289 * 210.00660 * 10 8 6 13 13 H 1.48499 * 109.46949 * 330.00490 * 10 8 6 14 14 C 1.34778 * 119.99624 * 84.87626 * 5 4 3 15 15 O 1.21723 * 119.99952 * 3.30731 * 14 5 4 16 16 C 1.46664 * 119.99748 * 183.30124 * 14 5 4 17 17 C 1.41346 * 126.52607 * 352.55535 * 16 14 5 18 18 N 1.30383 * 108.46809 * 179.97438 * 17 16 14 19 19 N 1.39644 * 109.41040 * 359.97438 * 18 17 16 20 20 N 1.40238 * 145.35950 * 179.97438 * 19 18 17 21 21 H 0.96996 * 126.62800 * 359.97438 * 20 19 18 22 22 C 1.36462 * 106.73407 * 180.02562 * 20 19 18 23 23 C 1.50703 * 125.46954 * 180.02562 * 22 20 19 24 24 N 1.30402 * 109.05352 * 0.02562 * 22 20 19 25 25 C 1.35394 * 109.93610 * 359.74256 * 24 22 20 26 26 H 1.09002 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47191 * 300.00451 * 1 2 3 28 28 H 1.08995 * 109.47164 * 60.00058 * 1 2 3 29 29 H 1.08998 * 109.46925 * 240.00188 * 2 1 3 30 30 H 1.09002 * 109.46963 * 119.99627 * 2 1 3 31 31 H 1.08990 * 109.47366 * 60.00160 * 3 2 1 32 32 H 1.09002 * 109.47052 * 299.99572 * 3 2 1 33 33 H 1.09005 * 109.47191 * 59.99549 * 4 3 2 34 34 H 1.08999 * 109.46943 * 300.00394 * 4 3 2 35 35 H 0.97000 * 120.00085 * 179.97438 * 9 8 6 36 36 H 1.08006 * 125.76598 * 359.95867 * 17 16 14 37 37 H 1.08997 * 109.47050 * 90.00385 * 23 22 20 38 38 H 1.09003 * 109.47003 * 210.00391 * 23 22 20 39 39 H 1.09003 * 109.47332 * 330.00697 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3869 3.4334 -1.1816 7 1 3.9292 4.3742 -1.4493 8 6 5.3094 2.8416 -2.0358 9 7 5.7981 1.6543 -1.7545 10 14 5.8549 3.7332 -3.5840 11 1 7.0445 4.5687 -3.2809 12 1 6.2018 2.7394 -4.6314 13 1 4.7519 4.6004 -4.0704 14 6 4.1842 3.4945 1.1623 15 8 3.9498 2.9338 2.2170 16 6 4.6038 4.8998 1.1562 17 6 5.0498 5.6398 0.0375 18 7 5.3308 6.8513 0.4290 19 7 5.0869 6.9644 1.7993 20 7 5.1170 7.8204 2.9098 21 1 5.3931 8.7502 2.9164 22 6 4.6840 7.0918 3.9793 23 6 4.5505 7.6044 5.3902 24 7 4.4042 5.8810 3.5844 25 6 4.6328 5.7646 2.2549 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8908 35 1 6.4417 1.2410 -2.3509 36 1 5.1424 5.2649 -0.9712 37 1 3.5513 8.0152 5.5345 38 1 4.7113 6.7852 6.0911 39 1 5.2925 8.3835 5.5655 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154666691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = 145.535504 kcal Electronic energy + Delta-G solvation = -23435.592559 eV Core-core repulsion = 19997.499899 eV Total energy + Delta-G solvation = -3438.092660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.44099 -38.78316 -37.55879 -35.06058 -33.89866 -32.81682 -31.70622 -31.37526 -29.33477 -27.73060 -27.63066 -25.02828 -23.18574 -21.75108 -21.29517 -21.06781 -20.17016 -19.16414 -17.87844 -16.70115 -16.17338 -15.66942 -15.06540 -14.67881 -14.51083 -14.18856 -14.01930 -13.87858 -13.55598 -13.03582 -12.76840 -12.70374 -12.51706 -12.08218 -11.94284 -11.77183 -11.35751 -11.23252 -10.99683 -10.90968 -10.63649 -10.50511 -10.38657 -10.22251 -10.11432 -9.92395 -9.57517 -8.90003 -8.82990 -8.36056 -7.41288 -7.08476 -6.30201 -4.21462 0.88412 1.32339 2.72123 3.11471 3.19338 3.21803 3.24901 3.74774 4.05177 4.07945 4.56643 4.71484 4.87384 5.00926 5.08742 5.15775 5.42444 5.57045 5.59380 5.72130 5.77417 5.84432 6.20185 6.23026 6.34195 6.44213 6.50043 6.53007 6.62392 6.73060 6.85684 6.92461 6.98404 7.28697 7.33069 7.39873 7.60847 7.87407 8.21140 8.26760 8.45160 9.08789 9.69490 10.13960 10.69854 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.006032 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.833337 B = 4640.639210 C = 6385.565935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.126 3.874 5 N -0.443 5.443 6 C -0.347 4.347 7 H 0.089 0.911 8 C 0.054 3.946 9 N -0.856 5.856 10 Si 0.898 3.102 11 H -0.270 1.270 12 H -0.279 1.279 13 H -0.264 1.264 14 C 0.565 3.435 15 O -0.594 6.594 16 C -0.225 4.225 17 C 0.110 3.890 18 N -0.293 5.293 19 N -0.241 5.241 20 N -0.468 5.468 21 H 0.445 0.555 22 C 0.331 3.669 23 C -0.070 4.070 24 N -0.468 5.468 25 C 0.275 3.725 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.271 0.729 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 9.504 6.663 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.169 4.169 4 C 0.003 3.997 5 N -0.162 5.162 6 C -0.475 4.475 7 H 0.106 0.894 8 C -0.154 4.154 9 N -0.490 5.490 10 Si 0.723 3.277 11 H -0.196 1.196 12 H -0.205 1.205 13 H -0.188 1.188 14 C 0.354 3.646 15 O -0.478 6.478 16 C -0.245 4.245 17 C -0.071 4.071 18 N -0.120 5.120 19 N -0.108 5.108 20 N -0.201 5.201 21 H 0.292 0.708 22 C 0.056 3.944 23 C -0.129 4.129 24 N -0.194 5.194 25 C 0.039 3.961 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.257 0.743 37 H 0.116 0.884 38 H 0.127 0.873 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.472 9.611 6.920 12.098 hybrid contribution 0.576 0.802 -1.247 1.590 sum -1.896 10.413 5.673 12.009 Atomic orbital electron populations 1.21761 0.96829 1.00534 1.01418 1.21429 0.94797 0.97917 1.01552 1.21961 0.98373 0.95310 1.01242 1.21311 0.90498 0.85120 1.02757 1.42955 1.57471 1.11591 1.04192 1.19336 1.23421 1.07466 0.97284 0.89421 1.25663 0.95157 0.95672 0.98947 1.69806 1.28098 1.13725 1.37396 0.86389 0.79851 0.79801 0.81645 1.19586 1.20454 1.18822 1.17094 0.79007 0.84405 0.84070 1.90657 1.56059 1.69714 1.31416 1.18962 1.20176 0.96380 0.88944 1.26051 0.92153 0.87254 1.01595 1.77631 1.31832 1.22635 0.79859 1.50598 1.50624 1.06164 1.03439 1.44838 1.66242 1.11151 0.97825 0.70769 1.24492 0.92910 0.86577 0.90399 1.20494 1.04338 1.02974 0.85109 1.70596 1.24606 1.15733 1.08499 1.20876 0.98693 0.86790 0.89744 0.93542 0.93135 0.93113 0.92281 0.92429 0.92939 0.92460 0.88433 0.93130 0.91875 0.74264 0.88355 0.87295 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.12 -2.07 5.93 -26.73 -0.16 -2.23 16 3 C -0.13 -2.74 5.50 -26.73 -0.15 -2.89 16 4 C 0.13 3.10 4.86 -4.04 -0.02 3.08 16 5 N -0.44 -11.58 2.45 -116.29 -0.28 -11.86 16 6 C -0.35 -8.64 6.31 -15.00 -0.09 -8.73 16 7 H 0.09 2.08 5.90 -52.49 -0.31 1.77 16 8 C 0.05 1.32 5.33 -17.46 -0.09 1.22 16 9 N -0.86 -22.40 11.47 55.50 0.64 -21.76 16 10 Si 0.90 18.62 29.00 -169.99 -4.93 13.69 16 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16 13 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 14 C 0.56 15.39 7.57 -12.86 -0.10 15.29 16 15 O -0.59 -17.50 16.56 5.17 0.09 -17.41 16 16 C -0.23 -5.59 6.06 -104.71 -0.63 -6.23 16 17 C 0.11 2.47 10.21 -16.99 -0.17 2.30 16 18 N -0.29 -6.16 12.59 30.86 0.39 -5.77 16 19 N -0.24 -4.76 5.98 31.25 0.19 -4.57 16 20 N -0.47 -6.32 7.50 32.91 0.25 -6.07 16 21 H 0.45 3.80 8.96 -182.50 -1.64 2.17 16 22 C 0.33 4.42 8.22 -154.18 -1.27 3.15 16 23 C -0.07 -0.44 10.51 36.01 0.38 -0.06 16 24 N -0.47 -9.32 11.25 -9.19 -0.10 -9.43 16 25 C 0.27 6.25 8.42 -154.83 -1.30 4.94 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.10 2.48 6.08 -51.93 -0.32 2.17 16 34 H 0.05 1.31 7.54 -51.93 -0.39 0.92 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.24 5.23 4.18 -52.48 -0.22 5.01 16 37 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 LS Contribution 329.37 15.07 4.96 4.96 Total: -1.00 -35.42 329.37 -8.29 -43.71 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.23 Total: 6.47 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -3.24 Total: 8.04 kcal Atomic # 7 Polarization: -60.54 SS G_CDS: 1.07 Total: -59.46 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.09 Total: -17.41 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.93 Total: 13.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.42 -8.29 -43.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154666691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.245 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds