Wall clock time and date at job start Tue Mar 31 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46811 * 2 1 4 4 C 1.53003 * 109.46811 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47321 * 179.97438 * 4 3 2 6 6 C 1.36960 * 119.99851 * 264.88151 * 5 4 3 7 7 H 1.07997 * 119.99742 * 124.99273 * 6 5 4 8 8 C 1.38952 * 120.00156 * 304.98187 * 6 5 4 9 9 N 1.31432 * 119.99947 * 4.64149 * 8 6 5 10 10 Si 1.86805 * 120.00292 * 184.63592 * 8 6 5 11 11 H 1.48498 * 109.46857 * 90.00213 * 10 8 6 12 12 H 1.48490 * 109.47289 * 210.00660 * 10 8 6 13 13 H 1.48499 * 109.46949 * 330.00490 * 10 8 6 14 14 C 1.34778 * 119.99624 * 84.87626 * 5 4 3 15 15 O 1.21723 * 119.99952 * 3.30731 * 14 5 4 16 16 C 1.46664 * 119.99748 * 183.30124 * 14 5 4 17 17 C 1.41346 * 126.52607 * 352.55535 * 16 14 5 18 18 N 1.30383 * 108.46809 * 179.97438 * 17 16 14 19 19 N 1.39644 * 109.41040 * 359.97438 * 18 17 16 20 20 N 1.40238 * 145.35950 * 179.97438 * 19 18 17 21 21 H 0.96996 * 126.62800 * 359.97438 * 20 19 18 22 22 C 1.36462 * 106.73407 * 180.02562 * 20 19 18 23 23 C 1.50703 * 125.46954 * 180.02562 * 22 20 19 24 24 N 1.30402 * 109.05352 * 0.02562 * 22 20 19 25 25 C 1.35394 * 109.93610 * 359.74256 * 24 22 20 26 26 H 1.09002 * 109.47303 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47191 * 300.00451 * 1 2 3 28 28 H 1.08995 * 109.47164 * 60.00058 * 1 2 3 29 29 H 1.08998 * 109.46925 * 240.00188 * 2 1 3 30 30 H 1.09002 * 109.46963 * 119.99627 * 2 1 3 31 31 H 1.08990 * 109.47366 * 60.00160 * 3 2 1 32 32 H 1.09002 * 109.47052 * 299.99572 * 3 2 1 33 33 H 1.09005 * 109.47191 * 59.99549 * 4 3 2 34 34 H 1.08999 * 109.46943 * 300.00394 * 4 3 2 35 35 H 0.97000 * 120.00085 * 179.97438 * 9 8 6 36 36 H 1.08006 * 125.76598 * 359.95867 * 17 16 14 37 37 H 1.08997 * 109.47050 * 90.00385 * 23 22 20 38 38 H 1.09003 * 109.47003 * 210.00391 * 23 22 20 39 39 H 1.09003 * 109.47332 * 330.00697 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0584 2.8238 0.0000 6 6 4.3869 3.4334 -1.1816 7 1 3.9292 4.3742 -1.4493 8 6 5.3094 2.8416 -2.0358 9 7 5.7981 1.6543 -1.7545 10 14 5.8549 3.7332 -3.5840 11 1 7.0445 4.5687 -3.2809 12 1 6.2018 2.7394 -4.6314 13 1 4.7519 4.6004 -4.0704 14 6 4.1842 3.4945 1.1623 15 8 3.9498 2.9338 2.2170 16 6 4.6038 4.8998 1.1562 17 6 5.0498 5.6398 0.0375 18 7 5.3308 6.8513 0.4290 19 7 5.0869 6.9644 1.7993 20 7 5.1170 7.8204 2.9098 21 1 5.3931 8.7502 2.9164 22 6 4.6840 7.0918 3.9793 23 6 4.5505 7.6044 5.3902 24 7 4.4042 5.8810 3.5844 25 6 4.6328 5.7646 2.2549 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8908 35 1 6.4417 1.2410 -2.3509 36 1 5.1424 5.2649 -0.9712 37 1 3.5513 8.0152 5.5345 38 1 4.7113 6.7852 6.0911 39 1 5.2925 8.3835 5.5655 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154666691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:42 Heat of formation + Delta-G solvation = 120.978130 kcal Electronic energy + Delta-G solvation = -23436.657446 eV Core-core repulsion = 19997.499899 eV Total energy + Delta-G solvation = -3439.157548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -43.91575 -40.56037 -39.26250 -36.97335 -35.58241 -34.22382 -33.35477 -32.76679 -30.96944 -29.27812 -28.91140 -26.94284 -24.86612 -23.27759 -22.68140 -22.53703 -21.82856 -21.01003 -19.57206 -18.45391 -17.60004 -17.25025 -16.83438 -16.34386 -16.09794 -15.72510 -15.61313 -15.51651 -14.69900 -14.54883 -14.30319 -14.20971 -13.69731 -13.55477 -13.32995 -13.09518 -12.97028 -12.93376 -12.59920 -12.58962 -12.14982 -12.07928 -11.96544 -11.88485 -11.73816 -11.43712 -11.35585 -10.83394 -10.39889 -10.33926 -9.28275 -8.89545 -8.21410 -6.19355 -0.45428 -0.03736 1.07798 1.47755 1.50327 1.60858 1.61239 2.31638 2.61312 2.76523 2.80104 3.00721 3.10318 3.50466 3.91691 4.13575 4.23733 4.26757 4.36422 4.49714 4.57445 4.64756 4.71812 4.86531 4.90370 4.94407 5.05482 5.06793 5.07808 5.15522 5.22085 5.39471 5.43688 5.45868 5.52404 5.64115 5.89043 6.25760 6.39760 6.49469 6.82479 7.13671 7.69016 8.14992 8.80589 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.006032 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.833337 B = 4640.639210 C = 6385.565935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.116 4.116 4 C 0.130 3.870 5 N -0.451 5.451 6 C -0.357 4.357 7 H 0.098 0.902 8 C 0.014 3.986 9 N -0.893 5.893 10 Si 0.967 3.033 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.248 1.248 14 C 0.550 3.450 15 O -0.636 6.636 16 C -0.283 4.283 17 C 0.116 3.884 18 N -0.294 5.294 19 N -0.249 5.249 20 N -0.440 5.440 21 H 0.471 0.529 22 C 0.369 3.631 23 C -0.069 4.069 24 N -0.532 5.532 25 C 0.271 3.729 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.023 0.977 35 H 0.273 0.727 36 H 0.241 0.759 37 H 0.129 0.871 38 H 0.113 0.887 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 12.365 7.233 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.155 4.155 4 C 0.006 3.994 5 N -0.169 5.169 6 C -0.485 4.485 7 H 0.116 0.884 8 C -0.190 4.190 9 N -0.529 5.529 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.204 1.204 13 H -0.171 1.171 14 C 0.341 3.659 15 O -0.524 6.524 16 C -0.302 4.302 17 C -0.065 4.065 18 N -0.121 5.121 19 N -0.115 5.115 20 N -0.175 5.175 21 H 0.324 0.676 22 C 0.096 3.904 23 C -0.128 4.128 24 N -0.261 5.261 25 C 0.032 3.968 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.256 0.744 37 H 0.147 0.853 38 H 0.131 0.869 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.714 12.553 7.473 14.859 hybrid contribution 0.685 0.091 -1.156 1.347 sum -2.029 12.644 6.318 14.279 Atomic orbital electron populations 1.21709 0.94187 1.02333 1.01687 1.21405 0.97062 0.95044 1.01759 1.21810 0.95714 0.97841 1.00116 1.21271 0.92766 0.84612 1.00724 1.43204 1.57233 1.11866 1.04584 1.19653 1.24064 1.07939 0.96832 0.88441 1.26462 0.94627 0.96037 1.01918 1.69940 1.28787 1.15283 1.38851 0.85334 0.79709 0.78644 0.77434 1.19250 1.20440 1.17115 1.17602 0.78781 0.85727 0.83742 1.90583 1.58279 1.70930 1.32618 1.18842 1.24256 0.95937 0.91207 1.25832 0.91964 0.87460 1.01252 1.77476 1.32115 1.21670 0.80815 1.50644 1.49809 1.07034 1.03980 1.45178 1.64905 1.11726 0.95646 0.67644 1.26017 0.87686 0.84542 0.92112 1.21047 1.07564 1.04313 0.79856 1.70647 1.28802 1.19349 1.07283 1.21003 0.97687 0.87268 0.90812 0.90964 0.93285 0.92457 0.91633 0.92695 0.94904 0.92459 0.89462 0.95806 0.91745 0.74375 0.85325 0.86855 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.91 71.98 0.71 -3.31 16 2 C -0.11 -4.05 5.93 30.60 0.18 -3.87 16 3 C -0.12 -5.13 5.50 30.60 0.17 -4.96 16 4 C 0.13 6.78 4.86 86.38 0.42 7.20 16 5 N -0.45 -24.96 2.45 -640.04 -1.57 -26.53 16 6 C -0.36 -18.45 6.31 84.06 0.53 -17.92 16 7 H 0.10 4.75 5.90 -2.91 -0.02 4.74 16 8 C 0.01 0.70 5.33 84.92 0.45 1.15 16 9 N -0.89 -48.40 11.47 21.67 0.25 -48.15 16 10 Si 0.97 38.41 29.00 68.60 1.99 40.40 16 11 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 12 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 13 H -0.25 -9.14 7.11 99.48 0.71 -8.44 16 14 C 0.55 31.94 7.57 86.44 0.65 32.59 16 15 O -0.64 -40.15 16.56 -4.42 -0.07 -40.23 16 16 C -0.28 -14.70 6.06 -19.92 -0.12 -14.82 16 17 C 0.12 5.33 10.21 85.67 0.88 6.20 16 18 N -0.29 -12.29 12.59 -56.27 -0.71 -13.00 16 19 N -0.25 -9.56 5.98 -55.03 -0.33 -9.89 16 20 N -0.44 -10.43 7.50 -49.80 -0.37 -10.80 16 21 H 0.47 5.88 8.96 -213.24 -1.91 3.97 16 22 C 0.37 8.73 8.22 137.70 1.13 9.86 16 23 C -0.07 -0.51 10.51 71.24 0.75 0.24 16 24 N -0.53 -20.98 11.25 -182.98 -2.06 -23.04 16 25 C 0.27 12.54 8.42 133.27 1.12 13.66 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 29 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 4.70 6.08 -2.38 -0.01 4.69 16 34 H 0.02 1.33 7.54 -2.39 -0.02 1.31 16 35 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 36 H 0.24 10.67 4.18 -2.91 -0.01 10.66 16 37 H 0.13 0.41 8.14 -2.39 -0.02 0.40 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: -1.00 -84.54 329.37 3.19 -81.35 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -0.82 Total: 23.85 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 6.88 Total: 26.02 kcal Atomic # 7 Polarization: -126.62 SS G_CDS: -4.79 Total: -131.40 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.07 Total: -40.23 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 1.99 Total: 40.40 kcal Total: -84.54 3.19 -81.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154666691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.333 kcal (2) G-P(sol) polarization free energy of solvation -84.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds