Wall clock time and date at job start Tue Mar 31 2020 08:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48495 * 109.46995 * 270.00143 * 3 2 1 5 5 H 1.48498 * 109.47276 * 30.00186 * 3 2 1 6 6 H 1.48504 * 109.47225 * 150.00060 * 3 2 1 7 7 C 1.37876 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00201 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00256 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47420 * 180.02562 * 9 7 2 11 11 C 1.35997 * 116.99894 * 179.97438 * 10 9 7 12 12 C 1.38699 * 119.97826 * 180.02562 * 11 10 9 13 13 C 1.38111 * 120.01938 * 179.97438 * 12 11 10 14 14 C 1.38864 * 119.98089 * 0.02562 * 13 12 11 15 15 N 1.39933 * 120.01939 * 180.02562 * 14 13 12 16 16 C 1.46500 * 120.00039 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.46998 * 180.02562 * 16 15 14 18 18 H 1.08998 * 109.48034 * 304.97798 * 17 16 15 19 19 C 1.53094 * 109.47863 * 184.94140 * 17 16 15 20 20 C 1.53170 * 109.16440 * 182.40730 * 19 17 16 21 21 C 1.53184 * 109.03645 * 56.98142 * 20 19 17 22 22 C 1.53096 * 109.16292 * 303.02098 * 21 20 19 23 23 O 1.42901 * 109.48134 * 65.00025 * 17 16 15 24 24 C 1.38855 * 119.95763 * 0.28199 * 14 13 12 25 25 C 1.38106 * 119.98559 * 359.40116 * 24 14 13 26 26 H 0.96998 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47279 * 59.99518 * 9 7 2 28 28 H 1.09000 * 109.47107 * 299.99803 * 9 7 2 29 29 H 1.07997 * 119.99174 * 359.97438 * 12 11 10 30 30 H 1.08008 * 120.00989 * 179.97438 * 13 12 11 31 31 H 0.97010 * 120.00053 * 0.02562 * 15 14 13 32 32 H 1.08993 * 109.47452 * 60.00405 * 16 15 14 33 33 H 1.09000 * 109.47175 * 300.00195 * 16 15 14 34 34 H 1.09000 * 109.52505 * 302.31818 * 19 17 16 35 35 H 1.09003 * 109.51770 * 62.50170 * 19 17 16 36 36 H 1.09005 * 109.54551 * 297.11648 * 20 19 17 37 37 H 1.08998 * 109.62162 * 176.89065 * 20 19 17 38 38 H 1.09000 * 109.52179 * 183.11238 * 21 20 19 39 39 H 1.08999 * 109.57261 * 62.95507 * 21 20 19 40 40 H 1.08999 * 109.47812 * 297.62808 * 22 21 20 41 41 H 1.08992 * 109.49097 * 177.59712 * 22 21 20 42 42 H 1.08007 * 120.00734 * 179.69961 * 24 14 13 43 43 H 1.07999 * 119.99586 * 180.32120 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0022 11 6 5.3361 -2.7194 -0.0034 12 6 5.8659 -4.0013 -0.0050 13 6 7.2349 -4.1831 -0.0068 14 6 8.0812 -3.0821 -0.0063 15 7 9.4685 -3.2655 -0.0086 16 6 10.3609 -2.1036 -0.0076 17 6 11.8156 -2.5779 -0.0112 18 1 11.9800 -3.2525 0.8290 19 6 12.7469 -1.3693 0.1142 20 6 14.2010 -1.8462 0.0493 21 6 14.4173 -2.6136 -1.2587 22 6 13.4215 -3.7741 -1.3311 23 8 12.0900 -3.2642 -1.2342 24 6 7.5500 -1.7993 0.0018 25 6 6.1807 -1.6192 -0.0031 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8745 -0.6800 -0.8911 29 1 5.2076 -4.8574 -0.0049 30 1 7.6473 -5.1814 -0.0076 31 1 9.8393 -4.1619 -0.0109 32 1 10.1761 -1.5043 0.8838 33 1 10.1734 -1.5007 -0.8961 34 1 12.5545 -0.6748 -0.7036 35 1 12.5694 -0.8701 1.0667 36 1 14.4078 -2.5019 0.8952 37 1 14.8700 -0.9863 0.0824 38 1 15.4346 -3.0040 -1.2880 39 1 14.2594 -1.9448 -2.1048 40 1 13.6072 -4.4642 -0.5081 41 1 13.5420 -4.2981 -2.2792 42 1 8.2074 -0.9424 0.0070 43 1 5.7674 -0.6214 -0.0021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165242546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:33 Heat of formation + Delta-G solvation = -68.581773 kcal Electronic energy + Delta-G solvation = -22310.230052 eV Core-core repulsion = 18934.100163 eV Total energy + Delta-G solvation = -3376.129889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -39.99106 -39.35380 -37.34363 -34.92074 -34.06489 -32.76110 -31.89725 -30.62960 -28.96672 -27.81000 -26.12480 -24.44318 -23.43123 -22.63155 -21.12381 -20.95661 -20.54940 -17.77360 -16.97892 -16.81561 -16.58186 -16.09446 -15.80245 -14.97589 -14.93775 -14.68675 -14.65624 -14.16076 -13.96759 -13.82508 -13.35403 -13.14494 -13.03527 -12.79282 -12.51846 -12.20322 -12.08122 -11.76944 -11.71206 -11.55457 -11.15567 -11.12536 -11.02491 -10.72604 -10.45042 -10.36049 -9.92278 -9.87083 -9.24971 -9.04775 -8.68121 -8.56670 -6.68304 -6.18055 -4.18913 1.74907 2.12451 3.21703 3.28644 3.29070 3.30306 3.48669 4.26867 4.29492 4.30159 4.35549 4.39162 4.42158 4.55699 4.71285 4.76043 4.97042 5.11964 5.12909 5.21390 5.26083 5.29973 5.30735 5.36948 5.46494 5.51923 5.58047 5.64611 5.75099 5.82071 5.87087 5.95449 6.33946 6.44411 6.57233 6.63869 6.82351 6.84059 6.93631 7.09285 7.48501 7.54983 7.89544 8.14476 8.66071 8.93202 9.38969 10.94476 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.002623 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.633570 B =10670.914772 C =11426.764989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.525 4.525 8 H 0.086 0.914 9 C 0.169 3.831 10 O -0.308 6.308 11 C 0.097 3.903 12 C -0.118 4.118 13 C -0.153 4.153 14 C 0.161 3.839 15 N -0.751 5.751 16 C 0.139 3.861 17 C 0.081 3.919 18 H 0.063 0.937 19 C -0.149 4.149 20 C -0.122 4.122 21 C -0.158 4.158 22 C 0.060 3.940 23 O -0.373 6.373 24 C -0.155 4.155 25 C -0.169 4.169 26 H 0.268 0.732 27 H 0.016 0.984 28 H 0.011 0.989 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.115 0.885 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.970 -4.779 0.189 31.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.104 0.896 9 C 0.096 3.904 10 O -0.221 6.221 11 C 0.049 3.951 12 C -0.137 4.137 13 C -0.175 4.175 14 C 0.062 3.938 15 N -0.385 5.385 16 C 0.014 3.986 17 C 0.023 3.977 18 H 0.081 0.919 19 C -0.187 4.187 20 C -0.159 4.159 21 C -0.196 4.196 22 C -0.017 4.017 23 O -0.292 6.292 24 C -0.178 4.178 25 C -0.189 4.189 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.133 0.867 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 30.547 -4.614 0.047 30.894 hybrid contribution 0.885 0.954 0.160 1.312 sum 31.433 -3.660 0.207 31.646 Atomic orbital electron populations 1.69854 1.06025 1.27293 1.49622 1.24712 0.94833 0.98708 0.94404 0.86880 0.80445 0.83711 0.78985 1.19684 1.20548 1.18926 1.20811 0.87678 0.95678 1.52141 0.89640 1.20906 0.96298 0.77760 0.95483 1.86146 1.16331 1.32262 1.87397 1.19071 0.84444 0.93495 0.98065 1.20174 0.94146 0.95154 1.04265 1.20270 0.92227 0.96972 1.08062 1.17569 0.83211 0.93592 0.99463 1.44263 1.01820 1.07366 1.85101 1.21225 0.86380 0.89400 1.01607 1.22318 0.94366 0.93501 0.87508 0.91924 1.22141 0.95013 0.98201 1.03393 1.21572 0.96365 1.00383 0.97607 1.22207 0.99868 0.98792 0.98700 1.22570 0.82219 0.94756 1.02118 1.88020 1.29515 1.73609 1.38032 1.20341 0.94621 0.94956 1.07878 1.21150 0.93353 0.98799 1.05559 0.92154 0.96659 0.97122 0.85527 0.86273 0.76894 0.91282 0.91842 0.90578 0.90472 0.91806 0.91259 0.90923 0.90930 0.93290 0.88809 0.86698 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.53 -15.61 9.99 -34.44 -0.34 -15.95 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.34 16 9 C 0.17 4.35 3.56 36.01 0.13 4.48 16 10 O -0.31 -7.57 10.12 -19.73 -0.20 -7.77 16 11 C 0.10 2.00 6.69 -39.24 -0.26 1.74 16 12 C -0.12 -2.07 9.98 -39.46 -0.39 -2.46 16 13 C -0.15 -2.27 9.89 -39.40 -0.39 -2.66 16 14 C 0.16 2.35 6.66 -83.70 -0.56 1.79 16 15 N -0.75 -8.63 5.69 -58.59 -0.33 -8.96 16 16 C 0.14 1.34 4.58 -4.04 -0.02 1.32 16 17 C 0.08 0.64 2.68 -26.68 -0.07 0.57 16 18 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 19 C -0.15 -0.96 5.42 -26.59 -0.14 -1.10 16 20 C -0.12 -0.66 6.03 -26.55 -0.16 -0.82 16 21 C -0.16 -0.87 6.14 -26.59 -0.16 -1.04 16 22 C 0.06 0.40 6.84 37.21 0.25 0.65 16 23 O -0.37 -3.48 10.35 -35.23 -0.36 -3.84 16 24 C -0.16 -2.46 9.31 -39.40 -0.37 -2.82 16 25 C -0.17 -3.18 9.03 -39.46 -0.36 -3.53 16 26 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.02 0.39 6.72 -51.93 -0.35 0.04 16 28 H 0.01 0.27 7.09 -51.93 -0.37 -0.09 16 29 H 0.13 2.06 8.06 -52.49 -0.42 1.63 16 30 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 31 H 0.40 4.07 8.49 -40.82 -0.35 3.72 16 32 H 0.07 0.62 7.94 -51.93 -0.41 0.21 16 33 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.12 1.56 6.73 -52.48 -0.35 1.21 16 43 H 0.13 2.39 6.29 -52.49 -0.33 2.06 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -32.24 347.57 -9.31 -41.55 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.81 Total: 1.51 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -2.94 Total: -17.71 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.44 Total: -35.44 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.56 Total: -11.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.24 -9.31 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165242546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.030 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds