Wall clock time and date at job start Tue Mar 31 2020 08:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 119.99934 * 2 1 4 4 H 1.48495 * 109.46995 * 270.00143 * 3 2 1 5 5 H 1.48498 * 109.47276 * 30.00186 * 3 2 1 6 6 H 1.48504 * 109.47225 * 150.00060 * 3 2 1 7 7 C 1.37876 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00201 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00256 * 179.97438 * 7 2 1 10 10 O 1.42901 * 109.47420 * 180.02562 * 9 7 2 11 11 C 1.35997 * 116.99894 * 179.97438 * 10 9 7 12 12 C 1.38699 * 119.97826 * 180.02562 * 11 10 9 13 13 C 1.38111 * 120.01938 * 179.97438 * 12 11 10 14 14 C 1.38864 * 119.98089 * 0.02562 * 13 12 11 15 15 N 1.39933 * 120.01939 * 180.02562 * 14 13 12 16 16 C 1.46500 * 120.00039 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.46998 * 180.02562 * 16 15 14 18 18 H 1.08998 * 109.48034 * 304.97798 * 17 16 15 19 19 C 1.53094 * 109.47863 * 184.94140 * 17 16 15 20 20 C 1.53170 * 109.16440 * 182.40730 * 19 17 16 21 21 C 1.53184 * 109.03645 * 56.98142 * 20 19 17 22 22 C 1.53096 * 109.16292 * 303.02098 * 21 20 19 23 23 O 1.42901 * 109.48134 * 65.00025 * 17 16 15 24 24 C 1.38855 * 119.95763 * 0.28199 * 14 13 12 25 25 C 1.38106 * 119.98559 * 359.40116 * 24 14 13 26 26 H 0.96998 * 120.00222 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47279 * 59.99518 * 9 7 2 28 28 H 1.09000 * 109.47107 * 299.99803 * 9 7 2 29 29 H 1.07997 * 119.99174 * 359.97438 * 12 11 10 30 30 H 1.08008 * 120.00989 * 179.97438 * 13 12 11 31 31 H 0.97010 * 120.00053 * 0.02562 * 15 14 13 32 32 H 1.08993 * 109.47452 * 60.00405 * 16 15 14 33 33 H 1.09000 * 109.47175 * 300.00195 * 16 15 14 34 34 H 1.09000 * 109.52505 * 302.31818 * 19 17 16 35 35 H 1.09003 * 109.51770 * 62.50170 * 19 17 16 36 36 H 1.09005 * 109.54551 * 297.11648 * 20 19 17 37 37 H 1.08998 * 109.62162 * 176.89065 * 20 19 17 38 38 H 1.09000 * 109.52179 * 183.11238 * 21 20 19 39 39 H 1.08999 * 109.57261 * 62.95507 * 21 20 19 40 40 H 1.08999 * 109.47812 * 297.62808 * 22 21 20 41 41 H 1.08992 * 109.49097 * 177.59712 * 22 21 20 42 42 H 1.08007 * 120.00734 * 179.69961 * 24 14 13 43 43 H 1.07999 * 119.99586 * 180.32120 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9879 -2.5413 -0.0022 11 6 5.3361 -2.7194 -0.0034 12 6 5.8659 -4.0013 -0.0050 13 6 7.2349 -4.1831 -0.0068 14 6 8.0812 -3.0821 -0.0063 15 7 9.4685 -3.2655 -0.0086 16 6 10.3609 -2.1036 -0.0076 17 6 11.8156 -2.5779 -0.0112 18 1 11.9800 -3.2525 0.8290 19 6 12.7469 -1.3693 0.1142 20 6 14.2010 -1.8462 0.0493 21 6 14.4173 -2.6136 -1.2587 22 6 13.4215 -3.7741 -1.3311 23 8 12.0900 -3.2642 -1.2342 24 6 7.5500 -1.7993 0.0018 25 6 6.1807 -1.6192 -0.0031 26 1 -0.4850 0.8400 0.0004 27 1 3.8752 -0.6803 0.8888 28 1 3.8745 -0.6800 -0.8911 29 1 5.2076 -4.8574 -0.0049 30 1 7.6473 -5.1814 -0.0076 31 1 9.8393 -4.1619 -0.0109 32 1 10.1761 -1.5043 0.8838 33 1 10.1734 -1.5007 -0.8961 34 1 12.5545 -0.6748 -0.7036 35 1 12.5694 -0.8701 1.0667 36 1 14.4078 -2.5019 0.8952 37 1 14.8700 -0.9863 0.0824 38 1 15.4346 -3.0040 -1.2880 39 1 14.2594 -1.9448 -2.1048 40 1 13.6072 -4.4642 -0.5081 41 1 13.5420 -4.2981 -2.2792 42 1 8.2074 -0.9424 0.0070 43 1 5.7674 -0.6214 -0.0021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165242546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:30 Heat of formation + Delta-G solvation = -89.552807 kcal Electronic energy + Delta-G solvation = -22311.139424 eV Core-core repulsion = 18934.100163 eV Total energy + Delta-G solvation = -3377.039262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.95044 -40.39501 -38.76601 -36.03158 -34.92048 -34.56444 -32.69671 -31.96168 -30.68488 -29.11155 -27.04427 -25.08505 -24.97782 -23.72295 -22.43358 -22.13760 -21.15509 -19.51020 -18.48432 -18.09156 -17.41657 -17.00502 -16.81639 -16.47256 -16.39698 -15.70576 -15.51909 -15.38949 -14.99602 -14.77952 -14.73592 -14.27494 -14.12919 -13.69672 -13.62426 -13.52999 -13.34923 -13.07124 -12.90775 -12.82492 -12.23104 -12.09585 -11.98583 -11.88452 -11.82531 -11.61334 -11.31440 -11.23234 -10.91658 -10.40668 -10.31849 -9.88230 -8.42649 -7.94185 -6.52811 0.45314 0.77163 1.31188 1.34442 1.45030 2.25432 2.50188 2.76194 2.78905 2.88836 2.98264 3.72925 3.90691 3.93832 3.97920 4.05608 4.06459 4.17054 4.24991 4.35095 4.48062 4.48766 4.59640 4.64823 4.68074 4.70818 4.78565 4.82368 4.87166 4.93480 5.05878 5.09116 5.14077 5.19390 5.23439 5.28823 5.37865 5.38930 5.62755 5.77787 6.00084 6.28036 6.44852 6.51611 6.87966 6.96022 7.12363 8.74019 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.029416 B = 0.002623 C = 0.002450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.633570 B =10670.914772 C =11426.764989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.018 3.982 3 Si 0.952 3.048 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.244 1.244 7 C -0.554 4.554 8 H 0.034 0.966 9 C 0.185 3.815 10 O -0.340 6.340 11 C 0.046 3.954 12 C -0.121 4.121 13 C -0.149 4.149 14 C 0.177 3.823 15 N -0.740 5.740 16 C 0.133 3.867 17 C 0.085 3.915 18 H 0.072 0.928 19 C -0.148 4.148 20 C -0.121 4.121 21 C -0.156 4.156 22 C 0.055 3.945 23 O -0.398 6.398 24 C -0.160 4.160 25 C -0.176 4.176 26 H 0.276 0.724 27 H 0.022 0.978 28 H 0.020 0.980 29 H 0.130 0.870 30 H 0.153 0.847 31 H 0.406 0.594 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.028 -3.903 0.540 35.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.168 1.168 7 C -0.591 4.591 8 H 0.052 0.948 9 C 0.111 3.889 10 O -0.255 6.255 11 C 0.000 4.000 12 C -0.140 4.140 13 C -0.171 4.171 14 C 0.075 3.925 15 N -0.373 5.373 16 C 0.009 3.991 17 C 0.027 3.973 18 H 0.090 0.910 19 C -0.186 4.186 20 C -0.159 4.159 21 C -0.194 4.194 22 C -0.022 4.022 23 O -0.318 6.318 24 C -0.182 4.182 25 C -0.195 4.195 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.148 0.852 30 H 0.170 0.830 31 H 0.242 0.758 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.157 0.843 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 34.665 -3.773 0.397 34.872 hybrid contribution -0.245 0.509 0.032 0.565 sum 34.420 -3.264 0.429 34.578 Atomic orbital electron populations 1.70002 1.08153 1.29055 1.50178 1.25788 0.95860 1.03304 0.93104 0.85655 0.79581 0.77446 0.80047 1.18140 1.19298 1.16786 1.21051 0.90203 0.94332 1.53527 0.94762 1.20537 0.93491 0.79021 0.95897 1.86054 1.19280 1.31212 1.88908 1.19434 0.82881 0.95456 1.02256 1.20379 0.95557 0.94207 1.03835 1.20567 0.90988 0.98752 1.06799 1.17706 0.84678 0.93105 0.97059 1.44370 1.00713 1.08700 1.83477 1.21403 0.87162 0.88767 1.01759 1.22293 0.93353 0.94209 0.87414 0.91046 1.22136 0.95337 0.97461 1.03680 1.21591 0.95777 1.00810 0.97713 1.22193 1.00396 0.98324 0.98473 1.22729 0.81342 0.95284 1.02804 1.87976 1.31064 1.73993 1.38719 1.20534 0.93637 0.96473 1.07575 1.21174 0.94503 0.97897 1.05959 0.91482 0.95997 0.96250 0.85175 0.82978 0.75848 0.90072 0.92654 0.91367 0.89368 0.91088 0.90498 0.89458 0.91876 0.92315 0.88405 0.84310 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.07 13.96 21.45 0.30 -58.78 16 2 C 0.02 1.10 5.47 84.66 0.46 1.56 16 3 Si 0.95 43.49 27.47 68.60 1.88 45.38 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 7 C -0.55 -34.54 9.99 25.60 0.26 -34.29 16 8 H 0.03 2.39 8.06 -2.91 -0.02 2.37 16 9 C 0.18 9.75 3.56 71.24 0.25 10.01 16 10 O -0.34 -17.47 10.12 -93.52 -0.95 -18.41 16 11 C 0.05 1.93 6.69 22.49 0.15 2.08 16 12 C -0.12 -4.18 9.98 22.35 0.22 -3.96 16 13 C -0.15 -4.07 9.89 22.39 0.22 -3.84 16 14 C 0.18 4.66 6.66 38.15 0.25 4.92 16 15 N -0.74 -14.53 5.69 -339.27 -1.93 -16.46 16 16 C 0.13 2.16 4.58 86.38 0.40 2.56 16 17 C 0.09 1.10 2.68 30.63 0.08 1.18 16 18 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 19 C -0.15 -1.49 5.42 30.68 0.17 -1.32 16 20 C -0.12 -0.97 6.03 30.71 0.19 -0.79 16 21 C -0.16 -1.35 6.14 30.69 0.19 -1.16 16 22 C 0.05 0.59 6.84 72.01 0.49 1.08 16 23 O -0.40 -6.47 10.35 -148.98 -1.54 -8.01 16 24 C -0.16 -4.70 9.31 22.39 0.21 -4.50 16 25 C -0.18 -6.51 9.03 22.35 0.20 -6.31 16 26 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.02 1.12 6.72 -2.39 -0.02 1.11 16 28 H 0.02 0.99 7.09 -2.39 -0.02 0.97 16 29 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 31 H 0.41 6.83 8.49 -92.70 -0.79 6.05 16 32 H 0.08 1.17 7.94 -2.39 -0.02 1.15 16 33 H 0.06 1.03 7.96 -2.39 -0.02 1.01 16 34 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.14 3.35 6.73 -2.91 -0.02 3.33 16 43 H 0.12 4.45 6.29 -2.91 -0.02 4.44 16 Total: -1.00 -73.14 347.57 1.66 -71.48 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.15 Total: 17.58 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 3.74 Total: -32.78 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.63 Total: -75.24 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -2.49 Total: -26.43 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.38 kcal Total: -73.14 1.66 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165242546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.068 kcal (2) G-P(sol) polarization free energy of solvation -73.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds