Wall clock time and date at job start Tue Mar 31 2020 08:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.36004 * 116.99785 * 179.97438 * 10 9 7 12 12 C 1.38705 * 119.98126 * 359.72098 * 11 10 9 13 13 C 1.38104 * 120.01652 * 179.76803 * 12 11 10 14 14 C 1.38852 * 119.98471 * 0.48581 * 13 12 11 15 15 N 1.39942 * 120.02344 * 179.74236 * 14 13 12 16 16 C 1.46499 * 119.99671 * 0.02933 * 15 14 13 17 17 C 1.52997 * 109.46947 * 179.97438 * 16 15 14 18 18 H 1.08998 * 109.48229 * 60.02231 * 17 16 15 19 19 C 1.53092 * 109.47971 * 180.02562 * 17 16 15 20 20 C 1.53184 * 109.16222 * 177.59272 * 19 17 16 21 21 C 1.53175 * 109.03606 * 303.01481 * 20 19 17 22 22 C 1.53096 * 109.16029 * 56.98108 * 21 20 19 23 23 O 1.42902 * 109.41754 * 302.39036 * 22 21 20 24 24 C 1.38865 * 119.96205 * 359.76773 * 14 13 12 25 25 C 1.38109 * 119.97751 * 0.02562 * 24 14 13 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.08005 * 119.98766 * 0.02562 * 12 11 10 30 30 H 1.08007 * 120.00807 * 180.26083 * 13 12 11 31 31 H 0.96997 * 119.99880 * 180.02562 * 15 14 13 32 32 H 1.09001 * 109.46633 * 299.99468 * 16 15 14 33 33 H 1.08998 * 109.47686 * 59.99507 * 16 15 14 34 34 H 1.09002 * 109.52142 * 297.49038 * 19 17 16 35 35 H 1.08995 * 109.52620 * 57.68309 * 19 17 16 36 36 H 1.09005 * 109.54081 * 183.15023 * 20 19 17 37 37 H 1.09003 * 109.54647 * 62.88472 * 20 19 17 38 38 H 1.08999 * 109.52152 * 297.08118 * 21 20 19 39 39 H 1.09000 * 109.52542 * 176.88524 * 21 20 19 40 40 H 1.09000 * 109.47905 * 182.40843 * 22 21 20 41 41 H 1.09004 * 109.48002 * 62.37891 * 22 21 20 42 42 H 1.07997 * 120.01400 * 179.97438 * 24 14 13 43 43 H 1.08004 * 119.99201 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.6596 -4.8421 -0.0152 12 6 0.2845 -5.0234 -0.0098 13 6 -0.2443 -6.2991 -0.0198 14 6 0.6011 -7.4006 -0.0251 15 7 0.0662 -8.6938 -0.0298 16 6 -1.3862 -8.8856 -0.0298 17 6 -1.7028 -10.3825 -0.0361 18 1 -1.2752 -10.8482 0.8518 19 6 -3.2205 -10.5832 -0.0367 20 6 -3.5294 -12.0821 -0.1037 21 6 -2.8643 -12.6740 -1.3501 22 6 -1.3603 -12.3924 -1.2988 23 8 -1.1438 -10.9830 -1.2061 24 6 1.9777 -7.2184 -0.0252 25 6 2.5048 -5.9418 -0.0195 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 -0.3729 -4.1665 -0.0019 30 1 -1.3151 -6.4401 -0.0198 31 1 0.6571 -9.4630 -0.0332 32 1 -1.8131 -8.4273 0.8623 33 1 -1.8142 -8.4204 -0.9177 34 1 -3.6436 -10.1647 0.8765 35 1 -3.6538 -10.0829 -0.9026 36 1 -4.6079 -12.2299 -0.1609 37 1 -3.1392 -12.5751 0.7867 38 1 -3.2904 -12.2159 -2.2427 39 1 -3.0326 -13.7506 -1.3764 40 1 -0.8880 -12.7740 -2.2040 41 1 -0.9278 -12.8848 -0.4278 42 1 2.6360 -8.0745 -0.0290 43 1 3.5755 -5.7998 -0.0192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165242564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:42 Heat of formation + Delta-G solvation = -74.073345 kcal Electronic energy + Delta-G solvation = -22232.688136 eV Core-core repulsion = 18856.320114 eV Total energy + Delta-G solvation = -3376.368022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92488 -39.20486 -37.17188 -34.80300 -34.01248 -32.82605 -31.81330 -30.47924 -28.61778 -27.33898 -25.99453 -24.36506 -23.49192 -22.71825 -21.18174 -20.85086 -20.49881 -17.50103 -16.81652 -16.72816 -16.41787 -16.01379 -15.66946 -14.90510 -14.83341 -14.65139 -14.41202 -14.14923 -13.92446 -13.74504 -13.33186 -13.08112 -12.94337 -12.57228 -12.41357 -12.00829 -11.93718 -11.65071 -11.49680 -11.45278 -11.08087 -10.99289 -10.93361 -10.67381 -10.39180 -10.29077 -10.05758 -9.81700 -9.17578 -8.95856 -8.50682 -8.38667 -6.54309 -6.17659 -4.20528 1.88168 2.26050 3.30513 3.32942 3.34637 3.36799 3.60005 4.26902 4.33024 4.41101 4.43416 4.44615 4.60823 4.74048 4.76961 4.82474 5.02394 5.16955 5.19234 5.28598 5.34013 5.39435 5.42515 5.44959 5.52066 5.59016 5.63885 5.70693 5.87929 5.90976 6.00159 6.08349 6.49229 6.68164 6.76026 6.87677 6.93424 7.15962 7.25235 7.27603 7.66942 7.76697 8.01482 8.06703 8.65327 8.95794 9.44383 10.93692 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038288 B = 0.002368 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.126948 B =11822.969644 C =12372.289583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.913 3.087 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.069 0.931 9 C 0.195 3.805 10 O -0.323 6.323 11 C 0.101 3.899 12 C -0.166 4.166 13 C -0.155 4.155 14 C 0.158 3.842 15 N -0.751 5.751 16 C 0.140 3.860 17 C 0.081 3.919 18 H 0.062 0.938 19 C -0.150 4.150 20 C -0.122 4.122 21 C -0.158 4.158 22 C 0.060 3.940 23 O -0.372 6.372 24 C -0.155 4.155 25 C -0.124 4.124 26 H 0.267 0.733 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.131 0.869 30 H 0.114 0.886 31 H 0.397 0.603 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.117 0.883 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 -26.043 0.005 26.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.087 0.913 9 C 0.122 3.878 10 O -0.237 6.237 11 C 0.053 3.947 12 C -0.185 4.185 13 C -0.177 4.177 14 C 0.059 3.941 15 N -0.386 5.386 16 C 0.014 3.986 17 C 0.023 3.977 18 H 0.080 0.920 19 C -0.188 4.188 20 C -0.159 4.159 21 C -0.196 4.196 22 C -0.017 4.017 23 O -0.291 6.291 24 C -0.177 4.177 25 C -0.143 4.143 26 H 0.076 0.924 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.231 0.769 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.135 0.865 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.806 -25.681 -0.132 26.567 hybrid contribution -0.007 0.415 0.157 0.444 sum -6.812 -25.265 0.025 26.167 Atomic orbital electron populations 1.69949 1.06112 1.27551 1.49831 1.24939 0.95042 0.99493 0.94841 0.86316 0.79267 0.81510 0.78943 1.19898 1.21069 1.19895 1.20972 0.94213 0.88931 1.51851 0.91276 1.20536 0.88716 0.81996 0.96550 1.86100 1.38592 1.11681 1.87322 1.19053 0.91486 0.86465 0.97678 1.21241 0.94799 0.97637 1.04844 1.20360 0.98446 0.91133 1.07794 1.17569 0.92067 0.84705 0.99769 1.44220 1.04755 1.04355 1.85247 1.21225 0.82957 0.92800 1.01579 1.22325 0.93103 0.93695 0.88560 0.91973 1.22148 0.95968 0.97101 1.03560 1.21575 1.00997 0.95342 0.98006 1.22206 0.96841 1.01355 0.99158 1.22569 0.95053 0.82119 1.01922 1.88017 1.77140 1.20996 1.42979 1.20230 0.92663 0.96445 1.08406 1.20154 0.99271 0.89973 1.04889 0.92391 0.96391 0.96380 0.85095 0.86766 0.76926 0.91319 0.91940 0.90455 0.90560 0.91276 0.91822 0.90928 0.90956 0.88844 0.93317 0.86493 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -15.34 9.43 -34.44 -0.32 -15.66 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.39 4.49 36.01 0.16 5.55 16 10 O -0.32 -8.24 10.12 -19.75 -0.20 -8.44 16 11 C 0.10 2.20 6.69 -39.24 -0.26 1.93 16 12 C -0.17 -3.34 9.03 -39.46 -0.36 -3.70 16 13 C -0.15 -2.63 9.31 -39.40 -0.37 -2.99 16 14 C 0.16 2.46 6.66 -83.70 -0.56 1.90 16 15 N -0.75 -9.27 5.63 -58.59 -0.33 -9.60 16 16 C 0.14 1.45 4.61 -4.04 -0.02 1.43 16 17 C 0.08 0.69 2.73 -26.69 -0.07 0.62 16 18 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 19 C -0.15 -1.04 5.42 -26.59 -0.14 -1.18 16 20 C -0.12 -0.71 6.03 -26.55 -0.16 -0.87 16 21 C -0.16 -0.94 6.14 -26.59 -0.16 -1.10 16 22 C 0.06 0.42 6.84 37.21 0.25 0.67 16 23 O -0.37 -3.66 10.15 -35.23 -0.36 -4.01 16 24 C -0.16 -2.44 9.89 -39.40 -0.39 -2.83 16 25 C -0.12 -2.27 9.98 -39.46 -0.39 -2.66 16 26 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.02 0.52 7.65 -51.93 -0.40 0.12 16 28 H 0.02 0.52 7.67 -51.93 -0.40 0.12 16 29 H 0.13 2.77 6.29 -52.48 -0.33 2.44 16 30 H 0.11 1.69 6.73 -52.48 -0.35 1.34 16 31 H 0.40 4.40 8.36 -40.82 -0.34 4.06 16 32 H 0.07 0.67 7.95 -51.93 -0.41 0.26 16 33 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 350.87 15.07 5.29 5.29 Total: -1.00 -31.60 350.87 -9.62 -41.22 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.84 Total: 1.93 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -2.89 Total: -17.31 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 0.41 Total: -35.37 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.56 Total: -12.46 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.60 -9.62 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165242564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.855 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds