Wall clock time and date at job start Tue Mar 31 2020 08:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42899 * 109.46876 * 179.72213 * 9 7 2 11 11 C 1.36004 * 116.99785 * 179.97438 * 10 9 7 12 12 C 1.38705 * 119.98126 * 359.72098 * 11 10 9 13 13 C 1.38104 * 120.01652 * 179.76803 * 12 11 10 14 14 C 1.38852 * 119.98471 * 0.48581 * 13 12 11 15 15 N 1.39942 * 120.02344 * 179.74236 * 14 13 12 16 16 C 1.46499 * 119.99671 * 0.02933 * 15 14 13 17 17 C 1.52997 * 109.46947 * 179.97438 * 16 15 14 18 18 H 1.08998 * 109.48229 * 60.02231 * 17 16 15 19 19 C 1.53092 * 109.47971 * 180.02562 * 17 16 15 20 20 C 1.53184 * 109.16222 * 177.59272 * 19 17 16 21 21 C 1.53175 * 109.03606 * 303.01481 * 20 19 17 22 22 C 1.53096 * 109.16029 * 56.98108 * 21 20 19 23 23 O 1.42902 * 109.41754 * 302.39036 * 22 21 20 24 24 C 1.38865 * 119.96205 * 359.76773 * 14 13 12 25 25 C 1.38109 * 119.97751 * 0.02562 * 24 14 13 26 26 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 28 28 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 29 29 H 1.08005 * 119.98766 * 0.02562 * 12 11 10 30 30 H 1.08007 * 120.00807 * 180.26083 * 13 12 11 31 31 H 0.96997 * 119.99880 * 180.02562 * 15 14 13 32 32 H 1.09001 * 109.46633 * 299.99468 * 16 15 14 33 33 H 1.08998 * 109.47686 * 59.99507 * 16 15 14 34 34 H 1.09002 * 109.52142 * 297.49038 * 19 17 16 35 35 H 1.08995 * 109.52620 * 57.68309 * 19 17 16 36 36 H 1.09005 * 109.54081 * 183.15023 * 20 19 17 37 37 H 1.09003 * 109.54647 * 62.88472 * 20 19 17 38 38 H 1.08999 * 109.52152 * 297.08118 * 21 20 19 39 39 H 1.09000 * 109.52542 * 176.88524 * 21 20 19 40 40 H 1.09000 * 109.47905 * 182.40843 * 22 21 20 41 41 H 1.09004 * 109.48002 * 62.37891 * 22 21 20 42 42 H 1.07997 * 120.01400 * 179.97438 * 24 14 13 43 43 H 1.08004 * 119.99201 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 2.1795 -3.5854 -0.0101 11 6 1.6596 -4.8421 -0.0152 12 6 0.2845 -5.0234 -0.0098 13 6 -0.2443 -6.2991 -0.0198 14 6 0.6011 -7.4006 -0.0251 15 7 0.0662 -8.6938 -0.0298 16 6 -1.3862 -8.8856 -0.0298 17 6 -1.7028 -10.3825 -0.0361 18 1 -1.2752 -10.8482 0.8518 19 6 -3.2205 -10.5832 -0.0367 20 6 -3.5294 -12.0821 -0.1037 21 6 -2.8643 -12.6740 -1.3501 22 6 -1.3603 -12.3924 -1.2988 23 8 -1.1438 -10.9830 -1.2061 24 6 1.9777 -7.2184 -0.0252 25 6 2.5048 -5.9418 -0.0195 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5609 0.8844 28 1 0.6244 -2.5529 -0.8956 29 1 -0.3729 -4.1665 -0.0019 30 1 -1.3151 -6.4401 -0.0198 31 1 0.6571 -9.4630 -0.0332 32 1 -1.8131 -8.4273 0.8623 33 1 -1.8142 -8.4204 -0.9177 34 1 -3.6436 -10.1647 0.8765 35 1 -3.6538 -10.0829 -0.9026 36 1 -4.6079 -12.2299 -0.1609 37 1 -3.1392 -12.5751 0.7867 38 1 -3.2904 -12.2159 -2.2427 39 1 -3.0326 -13.7506 -1.3764 40 1 -0.8880 -12.7740 -2.2040 41 1 -0.9278 -12.8848 -0.4278 42 1 2.6360 -8.0745 -0.0290 43 1 3.5755 -5.7998 -0.0192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165242564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:39 Heat of formation + Delta-G solvation = -93.621901 kcal Electronic energy + Delta-G solvation = -22233.535825 eV Core-core repulsion = 18856.320114 eV Total energy + Delta-G solvation = -3377.215711 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.91979 -40.38293 -38.71305 -36.02236 -34.95829 -34.56595 -32.67944 -31.92415 -30.19005 -28.92943 -27.03932 -25.36223 -25.00857 -23.80807 -22.52482 -22.10183 -21.16010 -19.17012 -18.42965 -18.02871 -17.42979 -16.96134 -16.79602 -16.48742 -16.34039 -15.74278 -15.53181 -15.37997 -15.06642 -14.76666 -14.52438 -14.20140 -14.02987 -13.69158 -13.56810 -13.47311 -13.22228 -13.01709 -12.85930 -12.79237 -12.27971 -12.21208 -12.11193 -11.93383 -11.75297 -11.61183 -11.27179 -11.23297 -10.75401 -10.40605 -10.27050 -9.87436 -8.37403 -7.92902 -6.51704 0.45670 0.78350 1.39367 1.44892 1.53239 2.30279 2.50125 2.79238 2.92312 2.95805 2.99391 3.73171 3.90537 3.93554 3.99129 4.05623 4.07074 4.17047 4.25279 4.43500 4.49003 4.54148 4.60841 4.68267 4.71462 4.76680 4.80468 4.87660 4.93567 5.01847 5.05959 5.09235 5.13977 5.19586 5.28174 5.38156 5.38869 5.49053 5.64493 5.79703 5.89652 6.27398 6.43039 6.56421 6.90787 6.98239 7.21330 8.74916 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038288 B = 0.002368 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.126948 B =11822.969644 C =12372.289583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.066 0.934 9 C 0.215 3.785 10 O -0.344 6.344 11 C 0.048 3.952 12 C -0.178 4.178 13 C -0.161 4.161 14 C 0.176 3.824 15 N -0.738 5.738 16 C 0.133 3.867 17 C 0.087 3.913 18 H 0.073 0.927 19 C -0.149 4.149 20 C -0.121 4.121 21 C -0.156 4.156 22 C 0.055 3.945 23 O -0.397 6.397 24 C -0.148 4.148 25 C -0.119 4.119 26 H 0.274 0.726 27 H -0.004 1.004 28 H -0.005 1.005 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.407 0.593 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.060 0.940 42 H 0.156 0.844 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.475 -28.057 0.339 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.812 3.188 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.595 4.595 8 H 0.084 0.916 9 C 0.141 3.859 10 O -0.259 6.259 11 C 0.001 3.999 12 C -0.197 4.197 13 C -0.183 4.183 14 C 0.074 3.926 15 N -0.371 5.371 16 C 0.009 3.991 17 C 0.029 3.971 18 H 0.091 0.909 19 C -0.187 4.187 20 C -0.158 4.158 21 C -0.194 4.194 22 C -0.022 4.022 23 O -0.317 6.317 24 C -0.170 4.170 25 C -0.138 4.138 26 H 0.082 0.918 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.124 0.876 30 H 0.152 0.848 31 H 0.243 0.757 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.174 0.826 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.558 -27.771 0.201 28.536 hybrid contribution -0.177 0.773 0.035 0.794 sum -6.735 -26.998 0.236 27.826 Atomic orbital electron populations 1.70065 1.07804 1.29043 1.49633 1.26015 0.96068 1.03484 0.93489 0.85138 0.78043 0.76145 0.79507 1.18890 1.19737 1.18815 1.21325 0.94363 0.90303 1.53498 0.91554 1.20055 0.88475 0.82960 0.94364 1.86009 1.38245 1.12844 1.88773 1.19467 0.92808 0.85698 1.01911 1.21140 0.94138 0.98387 1.06063 1.20483 0.99768 0.90246 1.07849 1.17684 0.92080 0.85635 0.97184 1.44309 1.05994 1.03282 1.83537 1.21405 0.81511 0.94651 1.01575 1.22277 0.94080 0.92111 0.88664 0.90912 1.22147 0.94823 0.98077 1.03665 1.21592 1.01561 0.94408 0.98270 1.22195 0.96091 1.02317 0.98787 1.22740 0.95881 0.80804 1.02735 1.87971 1.77579 1.22607 1.43539 1.20590 0.93277 0.96418 1.06717 1.20397 0.99636 0.89926 1.03836 0.91758 0.98574 0.98694 0.87591 0.84820 0.75707 0.90343 0.92910 0.89437 0.91529 0.90510 0.90974 0.91959 0.89344 0.88323 0.92214 0.82621 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 2 C 0.01 0.50 5.46 84.66 0.46 0.97 16 3 Si 0.99 44.76 29.54 68.60 2.03 46.79 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 7 C -0.56 -34.13 9.43 25.60 0.24 -33.89 16 8 H 0.07 3.98 7.81 -2.91 -0.02 3.96 16 9 C 0.22 12.73 4.49 71.24 0.32 13.05 16 10 O -0.34 -18.63 10.12 -93.60 -0.95 -19.58 16 11 C 0.05 2.16 6.69 22.49 0.15 2.31 16 12 C -0.18 -7.57 9.03 22.35 0.20 -7.37 16 13 C -0.16 -5.44 9.31 22.39 0.21 -5.23 16 14 C 0.18 5.14 6.66 38.14 0.25 5.39 16 15 N -0.74 -16.19 5.63 -339.28 -1.91 -18.11 16 16 C 0.13 2.49 4.61 86.38 0.40 2.89 16 17 C 0.09 1.26 2.73 30.62 0.08 1.35 16 18 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 19 C -0.15 -1.76 5.42 30.69 0.17 -1.59 16 20 C -0.12 -1.12 6.03 30.71 0.19 -0.93 16 21 C -0.16 -1.51 6.14 30.69 0.19 -1.32 16 22 C 0.05 0.64 6.84 72.01 0.49 1.13 16 23 O -0.40 -6.95 10.15 -148.98 -1.51 -8.47 16 24 C -0.15 -4.31 9.89 22.39 0.22 -4.09 16 25 C -0.12 -4.32 9.98 22.35 0.22 -4.10 16 26 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 27 H 0.00 -0.22 7.65 -2.38 -0.02 -0.23 16 28 H 0.00 -0.29 7.67 -2.39 -0.02 -0.31 16 29 H 0.11 4.94 6.29 -2.91 -0.02 4.92 16 30 H 0.13 3.89 6.73 -2.91 -0.02 3.87 16 31 H 0.41 7.61 8.36 -92.71 -0.78 6.84 16 32 H 0.08 1.36 7.95 -2.39 -0.02 1.34 16 33 H 0.05 1.12 7.95 -2.39 -0.02 1.11 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 37 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 43 H 0.14 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -70.87 350.87 1.95 -68.92 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.22 Total: 17.91 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 3.80 Total: -31.45 kcal Atomic # 7 Polarization: -72.50 SS G_CDS: -1.63 Total: -74.12 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -2.46 Total: -28.04 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -70.87 1.95 -68.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165242564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.703 kcal (2) G-P(sol) polarization free energy of solvation -70.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds