Wall clock time and date at job start Tue Mar 31 2020 08:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47174 * 269.99682 * 3 2 1 5 5 H 1.48501 * 109.47046 * 30.00081 * 3 2 1 6 6 H 1.48504 * 109.47165 * 150.00214 * 3 2 1 7 7 C 1.37888 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99451 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00343 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.36000 * 116.99861 * 179.97438 * 10 9 7 12 12 C 1.38696 * 119.98279 * 180.02562 * 11 10 9 13 13 C 1.38115 * 120.02333 * 179.97438 * 12 11 10 14 14 C 1.38862 * 119.97701 * 0.02562 * 13 12 11 15 15 N 1.39932 * 120.01657 * 179.97438 * 14 13 12 16 16 C 1.46504 * 120.00123 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.46891 * 325.00573 * 16 15 14 18 18 C 1.53006 * 109.46883 * 85.00139 * 16 15 14 19 19 C 1.52997 * 109.47127 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47060 * 300.00449 * 19 18 16 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 23 23 O 1.42903 * 109.47126 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47417 * 205.00225 * 16 15 14 25 25 C 1.38860 * 119.96319 * 0.27391 * 14 13 12 26 26 C 1.38110 * 119.97873 * 359.40628 * 25 14 13 27 27 H 0.97004 * 120.00134 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47266 * 59.99766 * 9 7 2 29 29 H 1.08999 * 109.46732 * 300.00081 * 9 7 2 30 30 H 1.08008 * 119.98951 * 359.97438 * 12 11 10 31 31 H 1.07994 * 120.00968 * 179.97438 * 13 12 11 32 32 H 0.97003 * 120.00252 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.46505 * 59.99948 * 18 16 15 34 34 H 1.08996 * 109.46884 * 300.00829 * 18 16 15 35 35 H 1.09002 * 109.47153 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.46832 * 60.00321 * 19 18 16 37 37 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 39 39 H 0.96701 * 113.99613 * 300.00003 * 23 21 20 40 40 H 1.09002 * 109.47045 * 60.00127 * 24 16 15 41 41 H 1.09001 * 109.47375 * 300.00052 * 24 16 15 42 42 H 1.08000 * 120.01194 * 179.70426 * 25 14 13 43 43 H 1.08003 * 119.99011 * 180.31827 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5414 -0.0001 11 6 5.3361 -2.7195 -0.0001 12 6 5.8659 -4.0013 -0.0008 13 6 7.2350 -4.1833 -0.0014 14 6 8.0812 -3.0823 -0.0008 15 7 9.4685 -3.2656 -0.0008 16 6 10.3609 -2.1038 -0.0008 17 1 9.9146 -1.3028 -0.5901 18 6 10.5720 -1.6229 1.4363 19 6 11.5035 -0.4092 1.4364 20 6 12.8510 -0.8005 0.8264 21 6 12.6399 -1.2813 -0.6107 22 1 12.1932 -0.4805 -1.1998 23 8 13.8984 -1.6473 -1.1802 24 6 11.7083 -2.4957 -0.6105 25 6 7.5500 -1.7993 0.0062 26 6 6.1807 -1.6193 0.0001 27 1 -0.4850 0.8401 0.0004 28 1 3.8746 -0.6808 0.8905 29 1 3.8751 -0.6796 -0.8895 30 1 5.2075 -4.8576 -0.0008 31 1 7.6472 -5.1814 -0.0015 32 1 9.8392 -4.1620 -0.0017 33 1 11.0182 -2.4240 2.0256 34 1 9.6120 -1.3439 1.8707 35 1 11.6542 -0.0669 2.4602 36 1 11.0567 0.3916 0.8472 37 1 13.5147 0.0641 0.8269 38 1 13.2977 -1.6014 1.4156 39 1 14.5405 -0.9249 -1.2124 40 1 11.5580 -2.8382 -1.6343 41 1 12.1547 -3.2967 -0.0212 42 1 8.2075 -0.9425 0.0114 43 1 5.7674 -0.6215 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169250769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:59 Heat of formation + Delta-G solvation = -76.679591 kcal Electronic energy + Delta-G solvation = -22684.119565 eV Core-core repulsion = 19307.638528 eV Total energy + Delta-G solvation = -3376.481037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.99442 -39.13458 -37.38996 -36.00457 -33.91154 -32.73102 -30.71498 -30.62933 -29.55723 -28.43368 -26.75961 -23.53410 -22.88250 -22.67616 -21.37410 -20.78036 -20.20764 -17.84041 -17.68581 -16.80781 -16.49307 -16.10663 -15.31788 -14.92697 -14.85933 -14.70238 -14.47453 -14.34327 -13.79137 -13.73970 -13.16395 -13.03861 -12.98695 -12.69767 -12.45071 -12.19389 -11.95532 -11.79855 -11.58962 -11.32369 -11.14904 -11.04936 -10.90761 -10.86132 -10.47284 -10.39185 -10.18835 -9.94622 -9.27951 -9.09743 -8.71083 -8.61517 -6.74524 -6.20408 -4.21420 1.69814 2.06759 3.19346 3.25965 3.26455 3.26712 3.85656 4.22295 4.27105 4.30787 4.37217 4.45020 4.61409 4.71473 4.86218 4.93121 5.00674 5.10079 5.10489 5.17296 5.25107 5.25900 5.52865 5.59724 5.63144 5.67465 5.70410 5.79815 5.82101 5.88914 5.95398 6.06819 6.29733 6.40426 6.53597 6.58753 6.80830 6.88859 7.04655 7.20972 7.45577 7.50240 7.82791 8.11228 8.62804 8.90773 9.36465 10.92133 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.003066 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.816528 B = 9130.343259 C = 9988.697536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.086 0.914 9 C 0.170 3.830 10 O -0.308 6.308 11 C 0.099 3.901 12 C -0.119 4.119 13 C -0.153 4.153 14 C 0.161 3.839 15 N -0.751 5.751 16 C 0.162 3.838 17 H 0.078 0.922 18 C -0.139 4.139 19 C -0.117 4.117 20 C -0.152 4.152 21 C 0.109 3.891 22 H 0.058 0.942 23 O -0.569 6.569 24 C -0.118 4.118 25 C -0.155 4.155 26 C -0.170 4.170 27 H 0.269 0.731 28 H 0.016 0.984 29 H 0.011 0.989 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.395 0.605 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.378 0.622 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.097 -1.770 0.892 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.700 3.300 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.564 4.564 8 H 0.104 0.896 9 C 0.096 3.904 10 O -0.221 6.221 11 C 0.051 3.949 12 C -0.138 4.138 13 C -0.175 4.175 14 C 0.062 3.938 15 N -0.383 5.383 16 C 0.055 3.945 17 H 0.096 0.904 18 C -0.178 4.178 19 C -0.155 4.155 20 C -0.190 4.190 21 C 0.049 3.951 22 H 0.076 0.924 23 O -0.374 6.374 24 C -0.157 4.157 25 C -0.177 4.177 26 C -0.189 4.189 27 H 0.079 0.921 28 H 0.033 0.967 29 H 0.029 0.971 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.229 0.771 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.225 0.775 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.134 0.866 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 27.490 -2.184 0.832 27.589 hybrid contribution 0.848 1.451 0.119 1.685 sum 28.338 -0.732 0.951 28.363 Atomic orbital electron populations 1.69854 1.06034 1.27319 1.49546 1.24713 0.94826 0.98700 0.94380 0.86885 0.80442 0.83733 0.78986 1.19673 1.20509 1.18948 1.20811 0.87665 0.95694 1.52226 0.89628 1.20905 0.96321 0.77713 0.95474 1.86150 1.16316 1.32307 1.87333 1.19083 0.84471 0.93491 0.97879 1.20183 0.94169 0.95173 1.04261 1.20277 0.92237 0.96977 1.08013 1.17553 0.83183 0.93561 0.99526 1.44404 1.01844 1.07108 1.84975 1.20642 0.89033 0.89320 0.95478 0.90430 1.22116 1.00239 0.97829 0.97616 1.21452 0.94684 0.98050 1.01304 1.22299 0.98210 1.01512 0.96970 1.21713 0.84390 0.96378 0.92575 0.92436 1.86508 1.24971 1.41534 1.84416 1.21694 0.93806 0.97813 1.02341 1.20389 0.94571 0.95033 1.07722 1.21165 0.93371 0.98815 1.05567 0.92127 0.96668 0.97120 0.85513 0.86245 0.77128 0.91604 0.90947 0.91327 0.91613 0.91683 0.91068 0.77451 0.90636 0.90836 0.86566 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.08 13.96 55.43 0.77 -26.30 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.53 -15.51 9.99 -34.44 -0.34 -15.85 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.17 4.31 3.56 36.00 0.13 4.43 16 10 O -0.31 -7.45 10.12 -19.74 -0.20 -7.65 16 11 C 0.10 1.98 6.69 -39.24 -0.26 1.72 16 12 C -0.12 -2.01 9.98 -39.46 -0.39 -2.41 16 13 C -0.15 -2.16 9.89 -39.40 -0.39 -2.54 16 14 C 0.16 2.20 6.64 -83.70 -0.56 1.64 16 15 N -0.75 -7.80 5.26 -52.12 -0.27 -8.07 16 16 C 0.16 1.45 2.15 -67.93 -0.15 1.30 16 17 H 0.08 0.76 6.50 -51.93 -0.34 0.42 16 18 C -0.14 -1.18 5.43 -26.73 -0.15 -1.33 16 19 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 20 C -0.15 -0.94 5.54 -26.73 -0.15 -1.09 16 21 C 0.11 0.78 3.47 -26.71 -0.09 0.68 16 22 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 23 O -0.57 -4.33 13.32 -35.23 -0.47 -4.80 16 24 C -0.12 -0.96 5.04 -26.71 -0.13 -1.09 16 25 C -0.15 -2.33 8.83 -39.40 -0.35 -2.68 16 26 C -0.17 -3.09 9.03 -39.46 -0.36 -3.45 16 27 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 28 H 0.02 0.39 6.72 -51.93 -0.35 0.04 16 29 H 0.01 0.27 7.08 -51.93 -0.37 -0.10 16 30 H 0.13 2.01 8.06 -52.48 -0.42 1.58 16 31 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.39 3.48 8.62 -40.82 -0.35 3.13 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.38 1.30 9.08 45.56 0.41 1.71 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.12 1.51 6.09 -52.49 -0.32 1.19 16 43 H 0.13 2.33 6.29 -52.48 -0.33 2.00 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -32.38 344.18 -8.95 -41.33 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.86 Total: 3.54 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -3.44 Total: -19.48 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.50 Total: -34.38 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -0.67 Total: -12.45 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.38 -8.95 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169250769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.346 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds