Wall clock time and date at job start Tue Mar 31 2020 08:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47174 * 269.99682 * 3 2 1 5 5 H 1.48501 * 109.47046 * 30.00081 * 3 2 1 6 6 H 1.48504 * 109.47165 * 150.00214 * 3 2 1 7 7 C 1.37888 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99451 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00343 * 180.02562 * 7 2 1 10 10 O 1.42897 * 109.47010 * 179.97438 * 9 7 2 11 11 C 1.36000 * 116.99861 * 179.97438 * 10 9 7 12 12 C 1.38696 * 119.98279 * 180.02562 * 11 10 9 13 13 C 1.38115 * 120.02333 * 179.97438 * 12 11 10 14 14 C 1.38862 * 119.97701 * 0.02562 * 13 12 11 15 15 N 1.39932 * 120.01657 * 179.97438 * 14 13 12 16 16 C 1.46504 * 120.00123 * 179.97438 * 15 14 13 17 17 H 1.09001 * 109.46891 * 325.00573 * 16 15 14 18 18 C 1.53006 * 109.46883 * 85.00139 * 16 15 14 19 19 C 1.52997 * 109.47127 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47060 * 300.00449 * 19 18 16 21 21 C 1.52996 * 109.47328 * 60.00126 * 20 19 18 22 22 H 1.08992 * 109.47554 * 59.99639 * 21 20 19 23 23 O 1.42903 * 109.47126 * 180.02562 * 21 20 19 24 24 C 1.52997 * 109.47417 * 205.00225 * 16 15 14 25 25 C 1.38860 * 119.96319 * 0.27391 * 14 13 12 26 26 C 1.38110 * 119.97873 * 359.40628 * 25 14 13 27 27 H 0.97004 * 120.00134 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47266 * 59.99766 * 9 7 2 29 29 H 1.08999 * 109.46732 * 300.00081 * 9 7 2 30 30 H 1.08008 * 119.98951 * 359.97438 * 12 11 10 31 31 H 1.07994 * 120.00968 * 179.97438 * 13 12 11 32 32 H 0.97003 * 120.00252 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.46505 * 59.99948 * 18 16 15 34 34 H 1.08996 * 109.46884 * 300.00829 * 18 16 15 35 35 H 1.09002 * 109.47153 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.46832 * 60.00321 * 19 18 16 37 37 H 1.09004 * 109.46724 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.47194 * 299.99650 * 20 19 18 39 39 H 0.96701 * 113.99613 * 300.00003 * 23 21 20 40 40 H 1.09002 * 109.47045 * 60.00127 * 24 16 15 41 41 H 1.09001 * 109.47375 * 300.00052 * 24 16 15 42 42 H 1.08000 * 120.01194 * 179.70426 * 25 14 13 43 43 H 1.08003 * 119.99011 * 180.31827 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5414 -0.0001 11 6 5.3361 -2.7195 -0.0001 12 6 5.8659 -4.0013 -0.0008 13 6 7.2350 -4.1833 -0.0014 14 6 8.0812 -3.0823 -0.0008 15 7 9.4685 -3.2656 -0.0008 16 6 10.3609 -2.1038 -0.0008 17 1 9.9146 -1.3028 -0.5901 18 6 10.5720 -1.6229 1.4363 19 6 11.5035 -0.4092 1.4364 20 6 12.8510 -0.8005 0.8264 21 6 12.6399 -1.2813 -0.6107 22 1 12.1932 -0.4805 -1.1998 23 8 13.8984 -1.6473 -1.1802 24 6 11.7083 -2.4957 -0.6105 25 6 7.5500 -1.7993 0.0062 26 6 6.1807 -1.6193 0.0001 27 1 -0.4850 0.8401 0.0004 28 1 3.8746 -0.6808 0.8905 29 1 3.8751 -0.6796 -0.8895 30 1 5.2075 -4.8576 -0.0008 31 1 7.6472 -5.1814 -0.0015 32 1 9.8392 -4.1620 -0.0017 33 1 11.0182 -2.4240 2.0256 34 1 9.6120 -1.3439 1.8707 35 1 11.6542 -0.0669 2.4602 36 1 11.0567 0.3916 0.8472 37 1 13.5147 0.0641 0.8269 38 1 13.2977 -1.6014 1.4156 39 1 14.5405 -0.9249 -1.2124 40 1 11.5580 -2.8382 -1.6343 41 1 12.1547 -3.2967 -0.0212 42 1 8.2075 -0.9425 0.0114 43 1 5.7674 -0.6215 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169250769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:56 Heat of formation + Delta-G solvation = -99.697468 kcal Electronic energy + Delta-G solvation = -22685.117695 eV Core-core repulsion = 19307.638528 eV Total energy + Delta-G solvation = -3377.479167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.05806 -40.15188 -38.61866 -36.84946 -35.10355 -34.62360 -31.98894 -31.48493 -30.64647 -29.93141 -27.95044 -25.06309 -24.03002 -23.33018 -22.63353 -21.99424 -20.89510 -19.51008 -18.52450 -18.31662 -17.88968 -16.98981 -16.56372 -16.46552 -16.05526 -15.82561 -15.49658 -15.08008 -15.01005 -14.79993 -14.60211 -14.18399 -14.01549 -13.76634 -13.48496 -13.40204 -13.27631 -12.97708 -12.96972 -12.56208 -12.33262 -12.09421 -11.91682 -11.84501 -11.71876 -11.55034 -11.41997 -11.27571 -10.92349 -10.75857 -10.29065 -9.88849 -8.43224 -7.95852 -6.53503 0.44709 0.76212 1.30632 1.34006 1.44537 2.24945 2.41381 2.75669 2.88291 2.96676 3.30546 3.71813 3.87192 3.96102 4.02463 4.05093 4.14833 4.25242 4.33832 4.37620 4.39998 4.48099 4.52608 4.62096 4.62974 4.68912 4.81715 4.98250 5.01969 5.08982 5.09562 5.12589 5.24274 5.24939 5.27631 5.30548 5.38110 5.45777 5.62398 5.78147 5.99716 6.44642 6.51158 6.87060 6.89422 6.96476 7.11782 8.73525 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.003066 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.816528 B = 9130.343259 C = 9988.697536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.019 3.981 3 Si 0.952 3.048 4 H -0.256 1.256 5 H -0.268 1.268 6 H -0.244 1.244 7 C -0.555 4.555 8 H 0.034 0.966 9 C 0.186 3.814 10 O -0.340 6.340 11 C 0.047 3.953 12 C -0.122 4.122 13 C -0.148 4.148 14 C 0.179 3.821 15 N -0.738 5.738 16 C 0.161 3.839 17 H 0.074 0.926 18 C -0.135 4.135 19 C -0.115 4.115 20 C -0.145 4.145 21 C 0.109 3.891 22 H 0.062 0.938 23 O -0.586 6.586 24 C -0.114 4.114 25 C -0.158 4.158 26 C -0.176 4.176 27 H 0.276 0.724 28 H 0.022 0.978 29 H 0.020 0.980 30 H 0.129 0.871 31 H 0.154 0.846 32 H 0.406 0.594 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.139 0.861 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.142 -0.528 0.957 32.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.180 4.180 3 Si 0.772 3.228 4 H -0.181 1.181 5 H -0.193 1.193 6 H -0.168 1.168 7 C -0.592 4.592 8 H 0.052 0.948 9 C 0.111 3.889 10 O -0.255 6.255 11 C 0.001 3.999 12 C -0.141 4.141 13 C -0.170 4.170 14 C 0.078 3.922 15 N -0.370 5.370 16 C 0.055 3.945 17 H 0.092 0.908 18 C -0.174 4.174 19 C -0.153 4.153 20 C -0.183 4.183 21 C 0.050 3.950 22 H 0.080 0.920 23 O -0.395 6.395 24 C -0.152 4.152 25 C -0.180 4.180 26 C -0.196 4.196 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.038 0.962 30 H 0.147 0.853 31 H 0.171 0.829 32 H 0.242 0.758 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.246 0.754 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.157 0.843 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 31.602 -0.968 0.898 31.630 hybrid contribution -0.264 0.902 0.092 0.944 sum 31.339 -0.066 0.989 31.354 Atomic orbital electron populations 1.70005 1.08189 1.29075 1.50167 1.25791 0.95841 1.03309 0.93070 0.85660 0.79576 0.77439 0.80088 1.18054 1.19307 1.16790 1.21061 0.90242 0.94335 1.53571 0.94782 1.20526 0.93460 0.79005 0.95884 1.86057 1.19339 1.31220 1.88890 1.19444 0.82864 0.95473 1.02157 1.20385 0.95632 0.94173 1.03891 1.20575 0.90933 0.98811 1.06719 1.17660 0.84658 0.92986 0.96943 1.44496 1.00653 1.08478 1.83397 1.20742 0.89169 0.88579 0.95978 0.90757 1.22056 0.99897 0.98637 0.96830 1.21440 0.94670 0.97284 1.01875 1.22235 0.97988 1.02011 0.96060 1.21691 0.84232 0.95834 0.93255 0.91971 1.86461 1.25489 1.43007 1.84497 1.21620 0.93399 0.98450 1.01705 1.20561 0.93510 0.96549 1.07384 1.21179 0.94545 0.97854 1.06005 0.91470 0.96062 0.96190 0.85275 0.82860 0.75806 0.91531 0.92520 0.90760 0.91271 0.90018 0.91500 0.75419 0.91375 0.90741 0.84345 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 2 C 0.02 1.12 5.47 84.66 0.46 1.58 16 3 Si 0.95 43.07 27.47 68.60 1.88 44.96 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.24 -10.20 6.54 99.48 0.65 -9.54 16 7 C -0.55 -34.38 9.99 25.60 0.26 -34.13 16 8 H 0.03 2.37 8.06 -2.91 -0.02 2.34 16 9 C 0.19 9.69 3.56 71.23 0.25 9.94 16 10 O -0.34 -17.28 10.12 -93.55 -0.95 -18.23 16 11 C 0.05 1.92 6.69 22.49 0.15 2.07 16 12 C -0.12 -4.10 9.98 22.35 0.22 -3.88 16 13 C -0.15 -3.84 9.89 22.39 0.22 -3.62 16 14 C 0.18 4.43 6.64 38.15 0.25 4.68 16 15 N -0.74 -12.99 5.26 -318.80 -1.68 -14.67 16 16 C 0.16 2.42 2.15 44.99 0.10 2.51 16 17 H 0.07 1.22 6.50 -2.39 -0.02 1.20 16 18 C -0.14 -1.93 5.43 30.60 0.17 -1.77 16 19 C -0.11 -1.23 5.92 30.59 0.18 -1.05 16 20 C -0.15 -1.33 5.54 30.59 0.17 -1.16 16 21 C 0.11 1.23 3.47 30.61 0.11 1.34 16 22 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 23 O -0.59 -7.30 13.32 -148.98 -1.98 -9.28 16 24 C -0.11 -1.51 5.04 30.61 0.15 -1.36 16 25 C -0.16 -4.44 8.83 22.39 0.20 -4.24 16 26 C -0.18 -6.35 9.03 22.35 0.20 -6.15 16 27 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 28 H 0.02 1.08 6.72 -2.39 -0.02 1.06 16 29 H 0.02 1.00 7.08 -2.39 -0.02 0.99 16 30 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 31 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 32 H 0.41 5.69 8.62 -92.71 -0.80 4.89 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.06 1.01 7.67 -2.39 -0.02 0.99 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.40 1.58 9.08 -74.06 -0.67 0.91 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.14 3.22 6.09 -2.91 -0.02 3.20 16 43 H 0.12 4.33 6.29 -2.91 -0.02 4.31 16 Total: -1.00 -73.71 344.18 0.16 -73.55 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.51 Total: 17.43 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 3.09 Total: -35.21 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -1.38 Total: -73.22 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -2.93 Total: -27.51 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.96 kcal Total: -73.71 0.16 -73.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169250769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.147 kcal (2) G-P(sol) polarization free energy of solvation -73.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds