Wall clock time and date at job start Tue Mar 31 2020 06:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 N 1.46901 * 109.47209 * 185.42317 * 3 2 1 5 5 C 1.46901 * 111.00018 * 160.22300 * 4 3 2 6 6 C 1.50699 * 109.46967 * 289.57583 * 5 4 3 7 7 H 1.08002 * 120.00276 * 355.51161 * 6 5 4 8 8 C 1.37880 * 120.00134 * 175.51121 * 6 5 4 9 9 N 1.31509 * 119.99810 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00138 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46818 * 89.99984 * 10 8 6 12 12 H 1.48492 * 109.47334 * 209.99939 * 10 8 6 13 13 H 1.48501 * 109.47053 * 330.00620 * 10 8 6 14 14 C 1.46901 * 111.00092 * 284.17534 * 4 3 2 15 15 H 1.09001 * 109.54801 * 55.18918 * 14 4 3 16 16 C 1.53518 * 109.54927 * 294.99864 * 14 4 3 17 17 S 1.81598 * 107.35314 * 167.59848 * 16 14 4 18 18 C 1.76453 * 102.64596 * 46.45386 * 17 16 14 19 19 C 1.39624 * 117.73723 * 166.72334 * 18 17 16 20 20 C 1.37736 * 120.62223 * 178.59122 * 19 18 17 21 21 C 1.38346 * 119.51472 * 359.97438 * 20 19 18 22 22 C 1.37765 * 120.01555 * 0.39154 * 21 20 19 23 23 C 1.38177 * 122.28942 * 346.05800 * 18 17 16 24 24 C 1.50047 * 124.71421 * 2.85326 * 23 18 17 25 25 H 1.08996 * 109.47550 * 59.99734 * 1 2 3 26 26 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46529 * 299.99647 * 1 2 3 28 28 H 1.09009 * 109.46529 * 240.00353 * 2 1 3 29 29 H 1.08999 * 109.47288 * 120.00720 * 2 1 3 30 30 H 1.09000 * 109.47183 * 65.42186 * 3 2 1 31 31 H 1.09002 * 109.47394 * 305.42130 * 3 2 1 32 32 H 1.08995 * 109.47235 * 49.57514 * 5 4 3 33 33 H 1.09001 * 109.46821 * 169.57944 * 5 4 3 34 34 H 0.97006 * 119.99973 * 179.97438 * 9 8 6 35 35 H 1.09005 * 109.87458 * 48.13840 * 16 14 4 36 36 H 1.09002 * 109.87970 * 287.06367 * 16 14 4 37 37 H 1.08001 * 119.68678 * 358.58426 * 19 18 17 38 38 H 1.08000 * 120.24303 * 180.02562 * 20 19 18 39 39 H 1.08007 * 119.98951 * 180.66153 * 21 20 19 40 40 H 1.07997 * 119.48517 * 180.02562 * 22 21 20 41 41 H 1.09001 * 108.66938 * 97.06730 * 24 23 18 42 42 H 1.09002 * 108.66986 * 214.97281 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5032 1.4445 -0.1309 5 6 3.9880 2.7497 -0.5991 6 6 3.5933 2.9447 -2.0404 7 1 3.1019 2.1474 -2.5783 8 6 3.8595 4.1408 -2.6724 9 7 4.4574 5.1118 -2.0173 10 14 3.3709 4.3822 -4.4591 11 1 1.9957 4.9385 -4.5253 12 1 4.3177 5.3241 -5.1083 13 1 3.4107 3.0757 -5.1640 14 6 4.1455 1.0676 1.1353 15 1 3.7583 0.1047 1.4683 16 6 3.8509 2.1352 2.1985 17 16 4.3410 1.4481 3.8064 18 6 5.9313 0.7639 3.4656 19 6 6.7275 0.3974 4.5525 20 6 7.9673 -0.1690 4.3546 21 6 8.4243 -0.3756 3.0652 22 6 7.6445 -0.0083 1.9905 23 6 6.3923 0.5735 2.1770 24 6 5.6479 0.9699 0.9359 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.7581 1.9275 0.9346 31 1 1.5996 1.9836 -0.8375 32 1 3.5474 3.5402 0.0083 33 1 5.0739 2.7867 -0.5116 34 1 4.6451 5.9532 -2.4620 35 1 2.7862 2.3687 2.2041 36 1 4.4278 3.0360 1.9890 37 1 6.3679 0.5597 5.5578 38 1 8.5780 -0.4506 5.1997 39 1 9.3907 -0.8290 2.9011 40 1 8.0094 -0.1739 0.9877 41 1 6.0193 1.9382 0.6006 42 1 5.8496 0.2335 0.1580 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172203548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:32 Heat of formation + Delta-G solvation = 4.130565 kcal Electronic energy + Delta-G solvation = -21277.401255 eV Core-core repulsion = 18347.177280 eV Total energy + Delta-G solvation = -2930.223975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.66050 -39.36127 -35.40017 -34.98398 -33.24015 -31.93557 -31.00713 -28.85978 -28.19826 -26.22475 -24.58092 -23.65934 -22.93162 -21.98332 -20.31696 -18.95415 -18.26918 -17.10139 -16.84960 -16.75501 -16.37417 -15.87282 -15.55142 -15.23039 -15.19388 -14.74792 -14.63214 -14.14205 -14.05875 -13.89793 -13.63255 -13.47746 -12.83811 -12.78282 -12.74875 -12.63089 -12.52129 -12.34328 -12.22252 -11.98281 -11.78926 -11.64766 -11.39298 -11.24577 -11.07186 -10.70895 -10.57821 -9.67541 -9.09913 -8.39421 -8.19641 -6.29415 0.23643 0.38393 0.58477 1.31456 1.39985 1.40697 1.52207 2.39225 2.72950 3.09166 3.12526 3.58035 3.69955 3.84941 3.94884 4.11565 4.13122 4.16875 4.30189 4.34920 4.42151 4.51344 4.57375 4.62910 4.68378 4.77684 4.90283 4.96700 4.97967 5.02872 5.10376 5.17660 5.22009 5.28229 5.36436 5.41641 5.50626 5.50716 5.57607 5.66477 6.00273 6.06520 6.32171 6.57455 6.87019 7.39991 8.89894 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.004946 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.970691 B = 5659.560173 C = 6679.208018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.058 3.942 4 N -0.527 5.527 5 C 0.205 3.795 6 C -0.519 4.519 7 H 0.061 0.939 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.098 3.902 15 H 0.096 0.904 16 C -0.129 4.129 17 S -0.124 6.124 18 C -0.098 4.098 19 C -0.109 4.109 20 C -0.106 4.106 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.088 4.088 24 C -0.078 4.078 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.028 0.972 31 H 0.061 0.939 32 H -0.032 1.032 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.138 0.862 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.060 0.940 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.509 -12.019 11.597 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.070 4.070 4 N -0.249 5.249 5 C 0.079 3.921 6 C -0.557 4.557 7 H 0.079 0.921 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.189 1.189 14 C -0.012 4.012 15 H 0.114 0.886 16 C -0.279 4.279 17 S 0.118 5.882 18 C -0.210 4.210 19 C -0.132 4.132 20 C -0.125 4.125 21 C -0.136 4.136 22 C -0.139 4.139 23 C -0.095 4.095 24 C -0.116 4.116 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.079 0.921 32 H -0.015 1.015 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.178 0.822 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.078 0.922 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.947 -12.101 12.203 17.295 hybrid contribution 0.291 1.546 -1.650 2.280 sum 2.238 -10.555 10.553 15.092 Atomic orbital electron populations 1.21694 0.94400 1.02359 1.01724 1.21444 0.96302 0.95093 1.01890 1.22146 0.87384 0.97860 0.99577 1.62292 1.06030 1.31568 1.25052 1.19451 0.94365 0.83980 0.94263 1.21450 1.38136 0.99013 0.97150 0.92105 1.25822 0.95247 0.95584 1.02646 1.70078 1.43378 1.05345 1.38651 0.85476 0.78029 0.78170 0.79541 1.19954 1.20944 1.18943 1.21688 0.94795 0.96863 0.87897 0.88610 1.24475 1.05277 1.02278 0.95865 1.85012 1.16479 1.69747 1.16965 1.21571 0.98355 1.05131 0.95954 1.21138 0.94679 0.99925 0.97435 1.21408 0.94981 0.97865 0.98290 1.21435 1.00621 0.99429 0.92158 1.21477 0.93131 0.98543 1.00713 1.19720 0.96931 1.00393 0.92431 1.20255 0.93609 1.02247 0.95459 0.93146 0.91073 0.92583 0.92174 0.91987 0.95387 0.92091 1.01468 0.96971 0.92818 0.87252 0.91420 0.84396 0.82172 0.82768 0.85015 0.92175 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.91 71.98 0.71 -2.82 16 2 C -0.11 -3.27 5.96 30.59 0.18 -3.09 16 3 C 0.06 2.18 4.71 86.30 0.41 2.59 16 4 N -0.53 -21.94 4.38 -876.68 -3.84 -25.79 16 5 C 0.21 10.57 3.75 85.56 0.32 10.89 16 6 C -0.52 -28.88 8.24 25.60 0.21 -28.67 16 7 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 8 C 0.01 0.28 5.46 84.66 0.46 0.75 16 9 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 10 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 14 C 0.10 3.51 2.05 44.72 0.09 3.60 16 15 H 0.10 3.23 6.75 -2.39 -0.02 3.22 16 16 C -0.13 -4.57 4.97 72.16 0.36 -4.21 16 17 S -0.12 -3.79 21.99 -56.49 -1.24 -5.03 16 18 C -0.10 -2.91 6.05 22.59 0.14 -2.77 16 19 C -0.11 -2.60 9.65 22.49 0.22 -2.38 16 20 C -0.11 -2.03 10.06 22.18 0.22 -1.81 16 21 C -0.12 -2.34 10.03 22.18 0.22 -2.11 16 22 C -0.12 -3.06 9.48 22.42 0.21 -2.84 16 23 C -0.09 -2.74 5.77 -19.82 -0.11 -2.85 16 24 C -0.08 -2.78 4.45 29.27 0.13 -2.65 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.06 1.73 7.05 -2.39 -0.02 1.71 16 30 H 0.03 1.02 5.76 -2.39 -0.01 1.00 16 31 H 0.06 2.59 7.00 -2.39 -0.02 2.57 16 32 H -0.03 -1.83 7.37 -2.39 -0.02 -1.85 16 33 H 0.01 0.68 5.69 -2.39 -0.01 0.67 16 34 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 35 H 0.11 3.83 5.92 -2.38 -0.01 3.82 16 36 H 0.07 2.75 7.44 -2.39 -0.02 2.73 16 37 H 0.14 2.82 8.05 -2.91 -0.02 2.79 16 38 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 40 H 0.13 3.07 8.01 -2.91 -0.02 3.05 16 41 H 0.06 2.49 6.05 -2.39 -0.01 2.47 16 42 H 0.09 3.07 8.00 -2.39 -0.02 3.05 16 Total: -1.00 -62.66 338.88 2.00 -60.67 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.00 Total: 17.92 kcal Atomic # 6 Polarization: -42.16 SS G_CDS: 3.77 Total: -38.38 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -3.56 Total: -81.25 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -1.24 Total: -5.03 kcal Total: -62.66 2.00 -60.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172203548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.796 kcal (2) G-P(sol) polarization free energy of solvation -62.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds