Wall clock time and date at job start Tue Mar 31 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47183 * 2 1 4 4 N 1.46900 * 109.46978 * 181.69752 * 3 2 1 5 5 C 1.46901 * 111.00011 * 164.52398 * 4 3 2 6 6 C 1.50695 * 109.47200 * 284.60769 * 5 4 3 7 7 H 1.07999 * 119.99668 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00350 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99965 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47034 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47509 * 119.99646 * 10 8 6 13 13 H 1.48498 * 109.46945 * 239.99794 * 10 8 6 14 14 C 1.46903 * 110.99909 * 288.47437 * 4 3 2 15 15 H 1.08997 * 109.55149 * 50.32980 * 14 4 3 16 16 C 1.53519 * 109.55191 * 170.52453 * 14 4 3 17 17 S 1.81619 * 107.31773 * 192.42119 * 16 14 4 18 18 C 1.76460 * 102.62604 * 313.56074 * 17 16 14 19 19 C 1.39624 * 117.72527 * 193.37255 * 18 17 16 20 20 C 1.37736 * 120.62572 * 180.47805 * 19 18 17 21 21 C 1.38344 * 119.51309 * 0.14924 * 20 19 18 22 22 C 1.37762 * 120.00921 * 359.68390 * 21 20 19 23 23 C 1.38176 * 122.29811 * 13.43863 * 18 17 16 24 24 C 1.50041 * 124.75353 * 358.07878 * 23 18 17 25 25 H 1.08994 * 109.46875 * 59.99956 * 1 2 3 26 26 H 1.09000 * 109.46815 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46987 * 299.99631 * 1 2 3 28 28 H 1.09007 * 109.47122 * 119.99865 * 2 1 3 29 29 H 1.09003 * 109.46965 * 239.99582 * 2 1 3 30 30 H 1.08994 * 109.47206 * 301.69699 * 3 2 1 31 31 H 1.08999 * 109.47034 * 61.69569 * 3 2 1 32 32 H 1.09010 * 109.47027 * 44.60532 * 5 4 3 33 33 H 1.08999 * 109.47242 * 164.60203 * 5 4 3 34 34 H 0.96994 * 120.00169 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.89067 * 311.87295 * 16 14 4 36 36 H 1.08999 * 109.88801 * 72.89092 * 16 14 4 37 37 H 1.07998 * 119.68768 * 0.47211 * 19 18 17 38 38 H 1.08005 * 120.24545 * 180.16354 * 20 19 18 39 39 H 1.08007 * 119.99265 * 179.66180 * 21 20 19 40 40 H 1.08006 * 119.47363 * 179.97438 * 22 21 20 41 41 H 1.08994 * 108.67095 * 262.16011 * 24 23 18 42 42 H 1.09001 * 108.65872 * 144.26819 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5084 1.4426 -0.0410 5 6 4.0247 2.7679 -0.4085 6 6 3.8288 2.9914 -1.8858 7 1 3.3674 2.2254 -2.4913 8 6 4.2396 4.1734 -2.4647 9 7 4.8020 5.1061 -1.7275 10 14 3.9962 4.4507 -4.2959 11 1 3.3452 3.2580 -4.8949 12 1 3.1358 5.6427 -4.5061 13 1 5.3146 4.6717 -4.9426 14 6 4.0709 0.9953 1.2402 15 1 3.5978 0.0601 1.5396 16 6 5.5836 0.7806 1.0902 17 16 6.1518 -0.1130 2.5658 18 6 5.3747 0.7752 3.8777 19 6 5.8197 0.5332 5.1788 20 6 5.2485 1.1863 6.2485 21 6 4.2223 2.0875 6.0279 22 6 3.7832 2.3311 4.7451 23 6 4.3578 1.6835 3.6535 24 6 3.8250 2.0542 2.3008 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.6521 1.9650 -0.8743 31 1 1.7017 1.9474 0.9048 32 1 3.4871 3.5348 0.1494 33 1 5.0869 2.8229 -0.1703 34 1 5.0907 5.9378 -2.1347 35 1 5.7876 0.1895 0.1974 36 1 6.0897 1.7435 1.0208 37 1 6.6192 -0.1728 5.3480 38 1 5.5993 0.9964 7.2522 39 1 3.7651 2.5998 6.8616 40 1 2.9812 3.0361 4.5828 41 1 4.2976 2.9833 1.9823 42 1 2.7512 2.2227 2.3831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172203550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:44 Heat of formation + Delta-G solvation = 16.273858 kcal Electronic energy + Delta-G solvation = -21335.512348 eV Core-core repulsion = 18405.814945 eV Total energy + Delta-G solvation = -2929.697402 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.51430 -37.94106 -34.01996 -33.07878 -31.78915 -30.92850 -29.77088 -27.32094 -26.50894 -24.68859 -22.87011 -22.58511 -21.54426 -21.05192 -18.73521 -17.53870 -16.53799 -15.82866 -15.56246 -15.32699 -14.80362 -14.56863 -14.15619 -13.82965 -13.65800 -13.54552 -13.25369 -12.91507 -12.64013 -12.48143 -12.18060 -11.93427 -11.55701 -11.45572 -11.24135 -11.22642 -10.99123 -10.95304 -10.77974 -10.56824 -10.33000 -10.13504 -9.93540 -9.60618 -9.58380 -9.24404 -8.65135 -8.46998 -7.41770 -7.17615 -6.07420 -4.08689 1.28289 1.38878 1.83820 2.59023 3.27899 3.36004 3.40596 3.73159 4.38270 4.72071 4.82380 4.93222 5.00864 5.05718 5.24800 5.28888 5.33654 5.41806 5.45597 5.54929 5.67968 5.69425 5.79681 5.83502 5.92473 5.99548 6.02975 6.17224 6.18299 6.29125 6.34273 6.39707 6.44887 6.49452 6.57394 6.64839 6.75726 6.95894 7.14327 7.24394 7.76012 8.01254 8.10098 8.45826 8.99748 9.56068 11.03042 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.004811 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.753105 B = 5818.022008 C = 6431.190432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.060 3.940 4 N -0.523 5.523 5 C 0.188 3.812 6 C -0.505 4.505 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.088 3.912 15 H 0.085 0.915 16 C -0.084 4.084 17 S -0.139 6.139 18 C -0.073 4.073 19 C -0.102 4.102 20 C -0.116 4.116 21 C -0.124 4.124 22 C -0.111 4.111 23 C -0.065 4.065 24 C -0.126 4.126 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.022 0.978 32 H -0.005 1.005 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.336 -8.381 12.609 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.068 4.068 4 N -0.246 5.246 5 C 0.063 3.937 6 C -0.543 4.543 7 H 0.082 0.918 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.212 1.212 13 H -0.210 1.210 14 C -0.023 4.023 15 H 0.103 0.897 16 C -0.232 4.232 17 S 0.104 5.896 18 C -0.186 4.186 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.145 4.145 22 C -0.131 4.131 23 C -0.072 4.072 24 C -0.165 4.165 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.013 0.987 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.139 0.861 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.327 -9.525 12.104 15.460 hybrid contribution -1.119 2.124 -0.315 2.421 sum -2.446 -7.402 11.789 14.133 Atomic orbital electron populations 1.21727 0.96468 1.00908 1.01560 1.21552 0.94589 0.97753 1.01930 1.22080 0.88445 0.95538 1.00779 1.62457 1.05940 1.31704 1.24465 1.19826 0.95246 0.82306 0.96333 1.21187 1.39130 1.00929 0.93086 0.91755 1.24977 0.95351 0.95989 0.98239 1.69957 1.41332 1.07015 1.35568 0.86471 0.77827 0.78080 0.85249 1.19617 1.21151 1.21037 1.21676 0.93091 0.97825 0.89694 0.89734 1.23929 0.98847 1.03911 0.96545 1.85275 1.62841 1.42384 0.99082 1.21404 0.99247 1.00941 0.96994 1.20866 1.00293 1.00607 0.90740 1.20953 0.96982 0.97258 0.98344 1.21007 0.97772 0.98934 0.96746 1.21269 1.00110 0.99483 0.92190 1.19741 0.95104 0.96343 0.95986 1.21107 1.02051 1.01883 0.91443 0.92667 0.93228 0.93312 0.92898 0.91343 0.89770 0.95947 0.98737 0.95028 0.92969 0.86128 0.88624 0.85814 0.85831 0.86115 0.86129 0.89109 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.81 5.95 -26.73 -0.16 -1.97 16 3 C 0.06 1.08 4.69 -3.83 -0.02 1.07 16 4 N -0.52 -10.41 4.34 -228.45 -0.99 -11.40 16 5 C 0.19 4.55 3.33 -4.98 -0.02 4.53 16 6 C -0.50 -13.59 8.50 -34.44 -0.29 -13.88 16 7 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 8 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 10 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.09 1.52 2.01 -68.01 -0.14 1.38 16 15 H 0.08 1.42 6.31 -51.93 -0.33 1.09 16 16 C -0.08 -1.43 5.43 37.43 0.20 -1.22 16 17 S -0.14 -2.12 21.99 -107.50 -2.36 -4.48 16 18 C -0.07 -1.12 6.05 -39.09 -0.24 -1.35 16 19 C -0.10 -1.34 9.65 -39.25 -0.38 -1.72 16 20 C -0.12 -1.33 10.06 -39.73 -0.40 -1.73 16 21 C -0.12 -1.46 10.03 -39.72 -0.40 -1.86 16 22 C -0.11 -1.51 9.48 -39.35 -0.37 -1.88 16 23 C -0.06 -1.01 5.77 -104.56 -0.60 -1.61 16 24 C -0.13 -2.12 4.02 -28.77 -0.12 -2.24 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.77 6.65 -51.92 -0.35 0.43 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.69 7.33 -51.93 -0.38 1.31 16 31 H 0.02 0.39 6.20 -51.93 -0.32 0.07 16 32 H -0.01 -0.13 7.29 -51.92 -0.38 -0.51 16 33 H 0.03 0.82 6.09 -51.93 -0.32 0.50 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.12 2.05 8.14 -51.93 -0.42 1.62 16 36 H 0.10 1.78 6.79 -51.93 -0.35 1.42 16 37 H 0.12 1.43 8.05 -52.49 -0.42 1.00 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 39 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 40 H 0.12 1.49 8.01 -52.48 -0.42 1.07 16 41 H 0.09 1.74 6.64 -51.93 -0.34 1.40 16 42 H 0.08 1.31 6.25 -51.93 -0.32 0.99 16 LS Contribution 339.38 15.07 5.11 5.11 Total: -1.00 -28.24 339.38 -11.62 -39.86 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.44 Total: 2.54 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.65 Total: -22.58 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.26 Total: -36.66 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -2.12 SS G_CDS: -2.36 Total: -4.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.24 -11.62 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172203550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.136 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds