Wall clock time and date at job start Tue Mar 31 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47183 * 2 1 4 4 N 1.46900 * 109.46978 * 181.69752 * 3 2 1 5 5 C 1.46901 * 111.00011 * 164.52398 * 4 3 2 6 6 C 1.50695 * 109.47200 * 284.60769 * 5 4 3 7 7 H 1.07999 * 119.99668 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00350 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99965 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00282 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47034 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47509 * 119.99646 * 10 8 6 13 13 H 1.48498 * 109.46945 * 239.99794 * 10 8 6 14 14 C 1.46903 * 110.99909 * 288.47437 * 4 3 2 15 15 H 1.08997 * 109.55149 * 50.32980 * 14 4 3 16 16 C 1.53519 * 109.55191 * 170.52453 * 14 4 3 17 17 S 1.81619 * 107.31773 * 192.42119 * 16 14 4 18 18 C 1.76460 * 102.62604 * 313.56074 * 17 16 14 19 19 C 1.39624 * 117.72527 * 193.37255 * 18 17 16 20 20 C 1.37736 * 120.62572 * 180.47805 * 19 18 17 21 21 C 1.38344 * 119.51309 * 0.14924 * 20 19 18 22 22 C 1.37762 * 120.00921 * 359.68390 * 21 20 19 23 23 C 1.38176 * 122.29811 * 13.43863 * 18 17 16 24 24 C 1.50041 * 124.75353 * 358.07878 * 23 18 17 25 25 H 1.08994 * 109.46875 * 59.99956 * 1 2 3 26 26 H 1.09000 * 109.46815 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46987 * 299.99631 * 1 2 3 28 28 H 1.09007 * 109.47122 * 119.99865 * 2 1 3 29 29 H 1.09003 * 109.46965 * 239.99582 * 2 1 3 30 30 H 1.08994 * 109.47206 * 301.69699 * 3 2 1 31 31 H 1.08999 * 109.47034 * 61.69569 * 3 2 1 32 32 H 1.09010 * 109.47027 * 44.60532 * 5 4 3 33 33 H 1.08999 * 109.47242 * 164.60203 * 5 4 3 34 34 H 0.96994 * 120.00169 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.89067 * 311.87295 * 16 14 4 36 36 H 1.08999 * 109.88801 * 72.89092 * 16 14 4 37 37 H 1.07998 * 119.68768 * 0.47211 * 19 18 17 38 38 H 1.08005 * 120.24545 * 180.16354 * 20 19 18 39 39 H 1.08007 * 119.99265 * 179.66180 * 21 20 19 40 40 H 1.08006 * 119.47363 * 179.97438 * 22 21 20 41 41 H 1.08994 * 108.67095 * 262.16011 * 24 23 18 42 42 H 1.09001 * 108.65872 * 144.26819 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5084 1.4426 -0.0410 5 6 4.0247 2.7679 -0.4085 6 6 3.8288 2.9914 -1.8858 7 1 3.3674 2.2254 -2.4913 8 6 4.2396 4.1734 -2.4647 9 7 4.8020 5.1061 -1.7275 10 14 3.9962 4.4507 -4.2959 11 1 3.3452 3.2580 -4.8949 12 1 3.1358 5.6427 -4.5061 13 1 5.3146 4.6717 -4.9426 14 6 4.0709 0.9953 1.2402 15 1 3.5978 0.0601 1.5396 16 6 5.5836 0.7806 1.0902 17 16 6.1518 -0.1130 2.5658 18 6 5.3747 0.7752 3.8777 19 6 5.8197 0.5332 5.1788 20 6 5.2485 1.1863 6.2485 21 6 4.2223 2.0875 6.0279 22 6 3.7832 2.3311 4.7451 23 6 4.3578 1.6835 3.6535 24 6 3.8250 2.0542 2.3008 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.6521 1.9650 -0.8743 31 1 1.7017 1.9474 0.9048 32 1 3.4871 3.5348 0.1494 33 1 5.0869 2.8229 -0.1703 34 1 5.0907 5.9378 -2.1347 35 1 5.7876 0.1895 0.1974 36 1 6.0897 1.7435 1.0208 37 1 6.6192 -0.1728 5.3480 38 1 5.5993 0.9964 7.2522 39 1 3.7651 2.5998 6.8616 40 1 2.9812 3.0361 4.5828 41 1 4.2976 2.9833 1.9823 42 1 2.7512 2.2227 2.3831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172203550.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:43 Heat of formation + Delta-G solvation = 2.186872 kcal Electronic energy + Delta-G solvation = -21336.123205 eV Core-core repulsion = 18405.814945 eV Total energy + Delta-G solvation = -2930.308260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.74691 -39.30160 -35.32210 -35.00216 -33.22997 -31.97285 -31.15400 -29.10147 -27.82432 -26.24917 -24.49220 -23.69244 -22.84682 -22.33941 -20.23627 -18.91408 -18.27122 -17.09945 -16.86331 -16.79648 -16.36625 -16.06129 -15.34978 -15.21138 -15.08511 -14.80422 -14.70269 -14.12418 -14.06659 -13.77551 -13.68967 -13.45968 -12.92823 -12.89752 -12.73272 -12.64208 -12.49708 -12.36527 -12.27733 -12.00304 -11.89562 -11.63265 -11.36802 -11.26929 -11.04708 -10.65732 -10.58345 -9.72956 -9.06526 -8.40496 -8.20340 -6.29648 0.21936 0.35447 0.61310 1.31784 1.39053 1.40615 1.53436 2.39444 2.70234 3.11706 3.22906 3.56871 3.61901 3.79875 3.98819 4.09696 4.11813 4.22909 4.27082 4.36875 4.42581 4.49349 4.54339 4.61300 4.66553 4.76165 4.84581 4.93628 4.96007 4.98125 5.04202 5.17109 5.20574 5.26064 5.33654 5.39651 5.46612 5.49227 5.54409 5.66711 5.97630 6.06541 6.33749 6.56978 6.86734 7.40028 8.89981 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.004811 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.753105 B = 5818.022008 C = 6431.190432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.061 3.939 4 N -0.528 5.528 5 C 0.210 3.790 6 C -0.518 4.518 7 H 0.061 0.939 8 C 0.004 3.996 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.264 1.264 12 H -0.280 1.280 13 H -0.280 1.280 14 C 0.094 3.906 15 H 0.098 0.902 16 C -0.086 4.086 17 S -0.119 6.119 18 C -0.096 4.096 19 C -0.108 4.108 20 C -0.105 4.105 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.089 4.089 24 C -0.113 4.113 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.026 0.974 32 H -0.034 1.034 33 H 0.009 0.991 34 H 0.263 0.737 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.140 0.860 38 H 0.162 0.838 39 H 0.154 0.846 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.000 -9.693 14.281 17.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.068 4.068 4 N -0.251 5.251 5 C 0.084 3.916 6 C -0.556 4.556 7 H 0.079 0.921 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.789 3.211 11 H -0.188 1.188 12 H -0.205 1.205 13 H -0.206 1.206 14 C -0.016 4.016 15 H 0.115 0.885 16 C -0.234 4.234 17 S 0.123 5.877 18 C -0.209 4.209 19 C -0.131 4.131 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.096 4.096 24 C -0.151 4.151 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.044 0.956 32 H -0.016 1.016 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.158 0.842 38 H 0.179 0.821 39 H 0.171 0.829 40 H 0.145 0.855 41 H 0.073 0.927 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.004 -10.855 13.788 17.662 hybrid contribution -0.896 2.526 -0.678 2.765 sum -2.901 -8.329 13.109 15.800 Atomic orbital electron populations 1.21693 0.94299 1.02396 1.01772 1.21468 0.96385 0.95039 1.01951 1.22108 0.87149 0.97756 0.99741 1.62388 1.07257 1.28834 1.26603 1.19386 0.93588 0.83792 0.94871 1.21500 1.38814 1.00967 0.94347 0.92120 1.25830 0.94976 0.95706 1.02862 1.70082 1.42359 1.07540 1.37561 0.85416 0.77862 0.78202 0.79657 1.18762 1.20543 1.20600 1.21676 0.93180 0.98203 0.88576 0.88457 1.23753 0.98533 1.02954 0.98166 1.85078 1.62991 1.41708 0.97879 1.21598 0.99777 1.01683 0.97830 1.21163 1.00719 1.01060 0.90145 1.21418 0.95821 0.95670 0.99542 1.21418 0.97277 0.98366 0.96668 1.21462 1.00467 0.99563 0.92708 1.19661 0.96454 0.97985 0.95474 1.20881 1.01720 0.99978 0.92548 0.93000 0.91063 0.92621 0.92044 0.92051 0.92236 0.95619 1.01612 0.97334 0.92821 0.86490 0.91229 0.84190 0.82091 0.82859 0.85506 0.92672 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.91 71.98 0.71 -2.72 16 2 C -0.11 -3.26 5.95 30.59 0.18 -3.07 16 3 C 0.06 2.25 4.69 86.30 0.40 2.66 16 4 N -0.53 -22.02 4.34 -876.67 -3.81 -25.83 16 5 C 0.21 10.82 3.33 85.56 0.28 11.11 16 6 C -0.52 -28.97 8.50 25.60 0.22 -28.75 16 7 H 0.06 3.37 7.80 -2.91 -0.02 3.35 16 8 C 0.00 0.23 5.46 84.65 0.46 0.70 16 9 N -0.93 -55.95 13.29 21.45 0.28 -55.66 16 10 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.09 3.38 2.01 44.72 0.09 3.47 16 15 H 0.10 3.26 6.31 -2.39 -0.02 3.25 16 16 C -0.09 -3.06 5.43 72.16 0.39 -2.66 16 17 S -0.12 -3.63 21.99 -56.49 -1.24 -4.87 16 18 C -0.10 -2.86 6.05 22.59 0.14 -2.73 16 19 C -0.11 -2.57 9.65 22.49 0.22 -2.35 16 20 C -0.11 -2.02 10.06 22.18 0.22 -1.79 16 21 C -0.12 -2.38 10.03 22.18 0.22 -2.16 16 22 C -0.12 -3.19 9.48 22.42 0.21 -2.98 16 23 C -0.09 -2.78 5.77 -19.82 -0.11 -2.89 16 24 C -0.11 -3.98 4.02 29.27 0.12 -3.86 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.71 6.65 -2.38 -0.02 1.69 16 29 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 2.49 7.33 -2.39 -0.02 2.47 16 31 H 0.03 0.93 6.20 -2.39 -0.01 0.92 16 32 H -0.03 -1.91 7.29 -2.38 -0.02 -1.92 16 33 H 0.01 0.48 6.09 -2.39 -0.01 0.47 16 34 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.12 4.18 8.14 -2.38 -0.02 4.16 16 36 H 0.07 2.81 6.79 -2.39 -0.02 2.80 16 37 H 0.14 2.81 8.05 -2.91 -0.02 2.79 16 38 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.13 3.04 8.01 -2.91 -0.02 3.02 16 41 H 0.05 2.31 6.64 -2.39 -0.02 2.30 16 42 H 0.08 2.74 6.25 -2.39 -0.01 2.72 16 Total: -1.00 -63.02 339.38 2.02 -61.00 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.99 Total: 17.10 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 3.76 Total: -38.03 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -3.52 Total: -81.49 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.24 Total: -4.87 kcal Total: -63.02 2.02 -61.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172203550.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.187 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds