Wall clock time and date at job start Tue Mar 31 2020 06:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47167 * 2 1 4 4 C 1.53001 * 109.47167 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47236 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00223 * 264.51675 * 5 4 3 7 7 H 1.07996 * 120.00430 * 146.51126 * 6 5 4 8 8 C 1.38811 * 119.99696 * 326.51412 * 6 5 4 9 9 N 1.31623 * 120.00376 * 337.35857 * 8 6 5 10 10 Si 1.86802 * 120.00055 * 157.35542 * 8 6 5 11 11 H 1.48505 * 109.46907 * 89.99491 * 10 8 6 12 12 H 1.48495 * 109.47494 * 209.99925 * 10 8 6 13 13 H 1.48504 * 109.47084 * 330.00314 * 10 8 6 14 14 C 1.46500 * 119.99630 * 84.51696 * 5 4 3 15 15 H 1.08994 * 109.64094 * 0.25153 * 14 5 4 16 16 C 1.53531 * 109.55183 * 239.99724 * 14 5 4 17 17 S 1.81601 * 107.32131 * 167.57953 * 16 14 5 18 18 C 1.76464 * 102.63225 * 46.40838 * 17 16 14 19 19 C 1.39624 * 117.72564 * 166.65092 * 18 17 16 20 20 C 1.37746 * 120.62303 * 179.47709 * 19 18 17 21 21 C 1.38338 * 119.51399 * 359.88674 * 20 19 18 22 22 C 1.37766 * 120.01075 * 0.32428 * 21 20 19 23 23 C 1.38176 * 122.30003 * 346.61429 * 18 17 16 24 24 C 1.50043 * 124.74906 * 1.89548 * 23 18 17 25 25 H 1.09001 * 109.46691 * 299.99948 * 1 2 3 26 26 H 1.09004 * 109.47192 * 59.99690 * 1 2 3 27 27 H 1.08996 * 109.47071 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46905 * 240.00445 * 2 1 3 29 29 H 1.08998 * 109.47621 * 120.00311 * 2 1 3 30 30 H 1.09001 * 109.46622 * 60.00027 * 3 2 1 31 31 H 1.08998 * 109.47117 * 299.99839 * 3 2 1 32 32 H 1.09001 * 109.46691 * 60.00052 * 4 3 2 33 33 H 1.08998 * 109.46984 * 300.00717 * 4 3 2 34 34 H 0.96991 * 119.99954 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.88446 * 48.12746 * 16 14 5 36 36 H 1.08995 * 109.88743 * 287.03550 * 16 14 5 37 37 H 1.08003 * 119.69028 * 359.51097 * 19 18 17 38 38 H 1.07993 * 120.24241 * 179.86180 * 20 19 18 39 39 H 1.07998 * 119.99636 * 180.34366 * 21 20 19 40 40 H 1.08001 * 119.47611 * 180.08657 * 22 21 20 41 41 H 1.09006 * 108.66343 * 97.79456 * 24 23 18 42 42 H 1.08996 * 108.66842 * 215.82432 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3940 3.4319 -1.1789 7 1 4.2319 4.4921 -1.3052 8 6 4.9424 2.6855 -2.2128 9 7 5.5471 1.5457 -1.9529 10 14 4.8223 3.2987 -3.9732 11 1 6.0049 4.1408 -4.2858 12 1 4.7814 2.1390 -4.8997 13 1 3.5850 4.1042 -4.1334 14 6 4.1877 3.5543 1.2645 15 1 3.8815 2.9135 2.0913 16 6 3.2989 4.8056 1.2277 17 16 3.2097 5.4555 2.9211 18 6 4.8967 5.4192 3.4377 19 6 5.2358 6.1173 4.5983 20 6 6.5330 6.1203 5.0616 21 6 7.5057 5.4220 4.3689 22 6 7.1753 4.7357 3.2209 23 6 5.8688 4.7312 2.7371 24 6 5.6324 3.9806 1.4595 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 5.9307 1.0244 -2.6753 35 1 2.3005 4.5411 0.8790 36 1 3.7376 5.5527 0.5664 37 1 4.4737 6.6596 5.1383 38 1 6.7889 6.6642 5.9588 39 1 8.5241 5.4145 4.7282 40 1 7.9413 4.1922 2.6876 41 1 5.9249 4.6153 0.6229 42 1 6.2605 3.0898 1.4569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172204684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:19 Heat of formation + Delta-G solvation = 24.258334 kcal Electronic energy + Delta-G solvation = -21300.703783 eV Core-core repulsion = 18371.352613 eV Total energy + Delta-G solvation = -2929.351169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 4.20 seconds Orbital eigenvalues (eV) -39.09303 -36.99850 -34.58688 -33.06962 -31.21332 -30.71593 -29.54547 -27.52747 -26.31994 -24.45944 -22.56394 -22.44466 -21.17090 -20.24542 -19.62177 -17.27089 -16.39017 -15.54201 -15.45662 -14.90821 -14.76766 -14.46145 -13.88716 -13.72269 -13.48475 -13.20689 -13.02891 -12.80130 -12.61697 -12.15468 -12.11115 -11.80815 -11.32271 -11.28425 -11.02764 -10.97362 -10.84520 -10.72696 -10.55963 -10.42263 -10.21259 -10.02121 -9.82478 -9.73446 -9.48096 -9.33710 -8.52919 -8.42744 -7.11021 -6.67668 -5.88010 -3.42096 1.47209 1.58428 2.05715 2.82008 3.30081 3.38815 3.41815 3.92536 4.40273 4.99684 5.11312 5.13728 5.20005 5.39583 5.49103 5.50336 5.54739 5.63162 5.65106 5.71610 5.82446 6.00671 6.05742 6.11927 6.21563 6.25962 6.26805 6.29999 6.42651 6.48703 6.54715 6.60440 6.66351 6.75229 6.85535 6.87247 6.89076 6.98266 7.18497 7.24000 7.69507 7.73876 8.39890 9.08833 9.71601 10.27460 11.12156 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.005520 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.074065 B = 5071.213286 C = 6192.839394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.135 4.135 4 C 0.145 3.855 5 N -0.573 5.573 6 C -0.260 4.260 7 H 0.062 0.938 8 C 0.014 3.986 9 N -0.884 5.884 10 Si 0.894 3.106 11 H -0.286 1.286 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.179 3.821 15 H 0.063 0.937 16 C -0.097 4.097 17 S -0.160 6.160 18 C -0.073 4.073 19 C -0.104 4.104 20 C -0.121 4.121 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.062 4.062 24 C -0.096 4.096 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.020 0.980 34 H 0.255 0.745 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 3.524 9.574 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.175 4.175 4 C 0.020 3.980 5 N -0.292 5.292 6 C -0.390 4.390 7 H 0.080 0.920 8 C -0.186 4.186 9 N -0.526 5.526 10 Si 0.723 3.277 11 H -0.213 1.213 12 H -0.214 1.214 13 H -0.203 1.203 14 C 0.070 3.930 15 H 0.082 0.918 16 C -0.247 4.247 17 S 0.082 5.918 18 C -0.186 4.186 19 C -0.127 4.127 20 C -0.141 4.141 21 C -0.146 4.146 22 C -0.132 4.132 23 C -0.069 4.069 24 C -0.135 4.135 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.140 0.860 41 H 0.104 0.896 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.845 3.729 9.943 10.993 hybrid contribution 1.157 -0.058 -1.623 1.994 sum -1.687 3.672 8.319 9.249 Atomic orbital electron populations 1.21770 0.96995 1.00481 1.01331 1.21467 0.94652 0.98496 1.01326 1.22205 1.00263 0.94388 1.00635 1.21063 0.89256 0.85755 1.01969 1.43957 1.73340 1.11463 1.00419 1.18949 1.35907 0.94021 0.90081 0.92030 1.25057 0.96752 0.97758 0.99080 1.69993 1.35795 1.15594 1.31259 0.86449 0.78164 0.78000 0.85091 1.21310 1.21444 1.20318 1.20291 0.91142 0.90903 0.90684 0.91830 1.24530 1.05738 1.02435 0.91998 1.85133 1.05500 1.81902 1.19220 1.21358 0.96524 1.01619 0.99070 1.20842 0.96662 0.99494 0.95685 1.20898 0.92833 1.00341 1.00024 1.20991 0.99160 0.98495 0.95971 1.21314 0.95782 0.99625 0.96495 1.20106 0.92916 0.96739 0.97097 1.20804 1.00289 0.99857 0.92563 0.93268 0.93112 0.93657 0.92355 0.92856 0.94054 0.92500 0.88041 0.96200 0.93467 0.87546 0.89526 0.86110 0.86106 0.86342 0.86050 0.89570 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.14 -2.56 5.54 -26.73 -0.15 -2.71 16 4 C 0.15 3.22 5.18 -4.04 -0.02 3.20 16 5 N -0.57 -13.04 2.40 -166.00 -0.40 -13.44 16 6 C -0.26 -6.51 8.20 -15.06 -0.12 -6.63 16 7 H 0.06 1.55 7.19 -52.49 -0.38 1.17 16 8 C 0.01 0.36 4.91 -17.43 -0.09 0.28 16 9 N -0.88 -23.95 11.34 55.49 0.63 -23.32 16 10 Si 0.89 20.68 29.61 -169.99 -5.03 15.64 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.18 3.58 2.55 -68.22 -0.17 3.40 16 15 H 0.06 1.28 7.76 -51.93 -0.40 0.88 16 16 C -0.10 -1.77 5.53 37.43 0.21 -1.56 16 17 S -0.16 -2.66 21.99 -107.50 -2.36 -5.02 16 18 C -0.07 -1.22 6.05 -39.09 -0.24 -1.46 16 19 C -0.10 -1.50 9.65 -39.24 -0.38 -1.88 16 20 C -0.12 -1.55 10.06 -39.72 -0.40 -1.95 16 21 C -0.13 -1.66 10.03 -39.72 -0.40 -2.06 16 22 C -0.11 -1.72 9.48 -39.35 -0.37 -2.10 16 23 C -0.06 -1.08 5.77 -104.56 -0.60 -1.68 16 24 C -0.10 -1.88 4.55 -28.76 -0.13 -2.01 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.10 2.55 5.33 -51.93 -0.28 2.28 16 33 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 34 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.11 1.95 8.14 -51.92 -0.42 1.53 16 36 H 0.09 1.65 7.52 -51.93 -0.39 1.26 16 37 H 0.12 1.54 8.05 -52.48 -0.42 1.12 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.12 1.74 8.01 -52.49 -0.42 1.32 16 41 H 0.09 1.83 7.56 -51.93 -0.39 1.44 16 42 H 0.08 1.68 8.02 -51.93 -0.42 1.27 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -26.10 347.05 -11.47 -37.57 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.88 Total: 4.31 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -2.66 Total: -20.96 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.23 Total: -36.76 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.36 Total: -5.02 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.10 -11.47 -37.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172204684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.828 kcal (2) G-P(sol) polarization free energy of solvation -26.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.20 seconds