Wall clock time and date at job start Tue Mar 31 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47167 * 2 1 4 4 C 1.53001 * 109.47167 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47236 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00223 * 264.51675 * 5 4 3 7 7 H 1.07996 * 120.00430 * 146.51126 * 6 5 4 8 8 C 1.38811 * 119.99696 * 326.51412 * 6 5 4 9 9 N 1.31623 * 120.00376 * 337.35857 * 8 6 5 10 10 Si 1.86802 * 120.00055 * 157.35542 * 8 6 5 11 11 H 1.48505 * 109.46907 * 89.99491 * 10 8 6 12 12 H 1.48495 * 109.47494 * 209.99925 * 10 8 6 13 13 H 1.48504 * 109.47084 * 330.00314 * 10 8 6 14 14 C 1.46500 * 119.99630 * 84.51696 * 5 4 3 15 15 H 1.08994 * 109.64094 * 0.25153 * 14 5 4 16 16 C 1.53531 * 109.55183 * 239.99724 * 14 5 4 17 17 S 1.81601 * 107.32131 * 167.57953 * 16 14 5 18 18 C 1.76464 * 102.63225 * 46.40838 * 17 16 14 19 19 C 1.39624 * 117.72564 * 166.65092 * 18 17 16 20 20 C 1.37746 * 120.62303 * 179.47709 * 19 18 17 21 21 C 1.38338 * 119.51399 * 359.88674 * 20 19 18 22 22 C 1.37766 * 120.01075 * 0.32428 * 21 20 19 23 23 C 1.38176 * 122.30003 * 346.61429 * 18 17 16 24 24 C 1.50043 * 124.74906 * 1.89548 * 23 18 17 25 25 H 1.09001 * 109.46691 * 299.99948 * 1 2 3 26 26 H 1.09004 * 109.47192 * 59.99690 * 1 2 3 27 27 H 1.08996 * 109.47071 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46905 * 240.00445 * 2 1 3 29 29 H 1.08998 * 109.47621 * 120.00311 * 2 1 3 30 30 H 1.09001 * 109.46622 * 60.00027 * 3 2 1 31 31 H 1.08998 * 109.47117 * 299.99839 * 3 2 1 32 32 H 1.09001 * 109.46691 * 60.00052 * 4 3 2 33 33 H 1.08998 * 109.46984 * 300.00717 * 4 3 2 34 34 H 0.96991 * 119.99954 * 180.02562 * 9 8 6 35 35 H 1.09008 * 109.88446 * 48.12746 * 16 14 5 36 36 H 1.08995 * 109.88743 * 287.03550 * 16 14 5 37 37 H 1.08003 * 119.69028 * 359.51097 * 19 18 17 38 38 H 1.07993 * 120.24241 * 179.86180 * 20 19 18 39 39 H 1.07998 * 119.99636 * 180.34366 * 21 20 19 40 40 H 1.08001 * 119.47611 * 180.08657 * 22 21 20 41 41 H 1.09006 * 108.66343 * 97.79456 * 24 23 18 42 42 H 1.08996 * 108.66842 * 215.82432 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.3940 3.4319 -1.1789 7 1 4.2319 4.4921 -1.3052 8 6 4.9424 2.6855 -2.2128 9 7 5.5471 1.5457 -1.9529 10 14 4.8223 3.2987 -3.9732 11 1 6.0049 4.1408 -4.2858 12 1 4.7814 2.1390 -4.8997 13 1 3.5850 4.1042 -4.1334 14 6 4.1877 3.5543 1.2645 15 1 3.8815 2.9135 2.0913 16 6 3.2989 4.8056 1.2277 17 16 3.2097 5.4555 2.9211 18 6 4.8967 5.4192 3.4377 19 6 5.2358 6.1173 4.5983 20 6 6.5330 6.1203 5.0616 21 6 7.5057 5.4220 4.3689 22 6 7.1753 4.7357 3.2209 23 6 5.8688 4.7312 2.7371 24 6 5.6324 3.9806 1.4595 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 5.9307 1.0244 -2.6753 35 1 2.3005 4.5411 0.8790 36 1 3.7376 5.5527 0.5664 37 1 4.4737 6.6596 5.1383 38 1 6.7889 6.6642 5.9588 39 1 8.5241 5.4145 4.7282 40 1 7.9413 4.1922 2.6876 41 1 5.9249 4.6153 0.6229 42 1 6.2605 3.0898 1.4569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172204684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:16 Heat of formation + Delta-G solvation = 14.676685 kcal Electronic energy + Delta-G solvation = -21301.119274 eV Core-core repulsion = 18371.352613 eV Total energy + Delta-G solvation = -2929.766661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -40.35039 -38.63524 -36.02100 -34.73911 -32.84311 -31.88756 -31.00065 -29.15746 -27.78486 -26.22927 -23.96713 -23.64567 -22.58322 -21.74232 -21.28870 -18.58546 -18.15986 -17.13712 -16.70654 -16.40327 -16.19199 -16.12589 -15.32809 -15.12431 -15.04980 -14.69551 -14.41474 -14.08816 -13.91231 -13.68828 -13.48881 -13.25738 -12.98427 -12.85405 -12.76779 -12.47105 -12.32351 -12.24545 -12.03550 -11.88446 -11.81449 -11.63480 -11.39832 -11.28581 -11.05819 -10.65094 -10.43708 -9.64683 -8.68918 -8.31483 -7.83375 -5.41185 0.29162 0.41821 0.72101 1.40966 1.43843 1.47523 1.55185 2.49318 2.76815 3.22710 3.46507 3.88759 3.91306 3.98519 4.09266 4.19296 4.21318 4.35564 4.37914 4.43356 4.51887 4.57231 4.65870 4.69262 4.75946 4.87538 4.96738 5.02786 5.06856 5.09586 5.15033 5.20185 5.30020 5.33135 5.42413 5.48918 5.54531 5.57739 5.62284 5.68606 5.88308 6.03945 6.43998 7.14314 7.82345 8.34596 9.12700 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013762 B = 0.005520 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.074065 B = 5071.213286 C = 6192.839394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.120 4.120 4 C 0.147 3.853 5 N -0.585 5.585 6 C -0.255 4.255 7 H 0.057 0.943 8 C -0.032 4.032 9 N -0.914 5.914 10 Si 0.948 3.052 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.274 1.274 14 C 0.182 3.818 15 H 0.061 0.939 16 C -0.092 4.092 17 S -0.137 6.137 18 C -0.095 4.095 19 C -0.107 4.107 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.125 4.125 23 C -0.088 4.088 24 C -0.080 4.080 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.015 0.985 34 H 0.251 0.749 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.162 0.838 39 H 0.152 0.848 40 H 0.122 0.878 41 H 0.059 0.941 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 4.777 11.808 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.156 4.156 3 C -0.160 4.160 4 C 0.021 3.979 5 N -0.305 5.305 6 C -0.385 4.385 7 H 0.075 0.925 8 C -0.230 4.230 9 N -0.558 5.558 10 Si 0.777 3.223 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.199 1.199 14 C 0.073 3.927 15 H 0.079 0.921 16 C -0.242 4.242 17 S 0.106 5.894 18 C -0.207 4.207 19 C -0.130 4.130 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.094 4.094 24 C -0.119 4.119 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.034 0.966 34 H 0.060 0.940 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.158 0.842 38 H 0.179 0.821 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.077 0.923 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.226 4.999 12.194 13.568 hybrid contribution 1.356 -0.390 -2.151 2.573 sum -1.870 4.608 10.043 11.207 Atomic orbital electron populations 1.21715 0.94646 1.01970 1.01665 1.21432 0.96672 0.96258 1.01268 1.21999 0.97643 0.96356 1.00021 1.20978 0.91388 0.85281 1.00256 1.44112 1.73710 1.11738 1.00921 1.19083 1.34580 0.93861 0.91010 0.92488 1.25634 0.97194 0.98219 1.01914 1.70113 1.37273 1.16733 1.31662 0.85592 0.77986 0.77235 0.81526 1.21399 1.21798 1.19862 1.20325 0.91869 0.91287 0.89238 0.92090 1.24233 1.04932 1.01171 0.93867 1.84940 1.05956 1.81666 1.16867 1.21550 0.96135 1.02736 1.00303 1.21158 0.98175 0.98948 0.94767 1.21388 0.91687 0.99015 1.00606 1.21392 1.01038 0.96808 0.94514 1.21454 0.94956 1.00379 0.97711 1.19905 0.94465 0.98333 0.96718 1.20514 0.99272 0.98602 0.93489 0.92447 0.93273 0.91616 0.93313 0.92076 0.93379 0.94168 0.90957 0.96630 0.93978 0.87679 0.90756 0.84179 0.82067 0.82990 0.86037 0.92276 0.92531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 9.91 71.98 0.71 -2.98 16 2 C -0.12 -3.78 5.93 30.60 0.18 -3.60 16 3 C -0.12 -4.63 5.54 30.60 0.17 -4.46 16 4 C 0.15 6.75 5.18 86.38 0.45 7.20 16 5 N -0.59 -27.75 2.40 -679.10 -1.63 -29.38 16 6 C -0.26 -13.25 8.20 84.03 0.69 -12.56 16 7 H 0.06 2.97 7.19 -2.91 -0.02 2.95 16 8 C -0.03 -1.72 4.91 84.86 0.42 -1.31 16 9 N -0.91 -51.57 11.34 21.65 0.25 -51.32 16 10 Si 0.95 43.68 29.61 68.60 2.03 45.71 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.18 7.51 2.55 44.80 0.11 7.62 16 15 H 0.06 2.53 7.76 -2.39 -0.02 2.51 16 16 C -0.09 -3.42 5.53 72.16 0.40 -3.02 16 17 S -0.14 -4.41 21.99 -56.49 -1.24 -5.65 16 18 C -0.09 -3.05 6.05 22.59 0.14 -2.92 16 19 C -0.11 -2.77 9.65 22.49 0.22 -2.55 16 20 C -0.11 -2.28 10.06 22.18 0.22 -2.06 16 21 C -0.12 -2.70 10.03 22.18 0.22 -2.47 16 22 C -0.13 -3.73 9.48 22.42 0.21 -3.52 16 23 C -0.09 -3.06 5.77 -19.82 -0.11 -3.17 16 24 C -0.08 -3.26 4.55 29.28 0.13 -3.13 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 3.82 5.33 -2.39 -0.01 3.81 16 33 H 0.02 0.70 8.04 -2.39 -0.02 0.68 16 34 H 0.25 13.80 8.31 -92.72 -0.77 13.03 16 35 H 0.10 3.89 8.14 -2.38 -0.02 3.88 16 36 H 0.07 2.92 7.52 -2.39 -0.02 2.90 16 37 H 0.14 3.04 8.05 -2.91 -0.02 3.01 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 40 H 0.12 3.51 8.01 -2.91 -0.02 3.48 16 41 H 0.06 2.68 7.56 -2.38 -0.02 2.66 16 42 H 0.06 2.51 8.02 -2.39 -0.02 2.49 16 Total: -1.00 -58.03 347.05 4.54 -53.50 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.97 Total: 20.08 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 4.16 Total: -32.92 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -1.39 Total: -80.71 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -1.24 Total: -5.65 kcal Total: -58.03 4.54 -53.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172204684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.172 kcal (2) G-P(sol) polarization free energy of solvation -58.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds