Wall clock time and date at job start Tue Mar 31 2020 06:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46723 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46786 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00034 * 269.99768 * 5 4 3 7 7 H 1.07998 * 119.99738 * 141.71191 * 6 5 4 8 8 C 1.38808 * 120.00305 * 321.72319 * 6 5 4 9 9 N 1.31624 * 119.99607 * 339.26251 * 8 6 5 10 10 Si 1.86795 * 120.00617 * 159.26466 * 8 6 5 11 11 H 1.48505 * 109.47157 * 59.99643 * 10 8 6 12 12 H 1.48503 * 109.47605 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47291 * 300.00100 * 10 8 6 14 14 C 1.46501 * 120.00087 * 90.00385 * 5 4 3 15 15 H 1.09004 * 109.54673 * 5.34329 * 14 5 4 16 16 C 1.53499 * 109.55387 * 125.64806 * 14 5 4 17 17 S 1.81601 * 107.36830 * 192.29541 * 16 14 5 18 18 C 1.76458 * 102.64756 * 313.59641 * 17 16 14 19 19 C 1.39631 * 117.73063 * 193.19683 * 18 17 16 20 20 C 1.37740 * 120.61414 * 181.48585 * 19 18 17 21 21 C 1.38344 * 119.51988 * 0.02562 * 20 19 18 22 22 C 1.37766 * 120.01104 * 359.59705 * 21 20 19 23 23 C 1.38168 * 122.29648 * 13.90114 * 18 17 16 24 24 C 1.50045 * 124.70743 * 357.11229 * 23 18 17 25 25 H 1.08998 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47285 * 300.00324 * 1 2 3 27 27 H 1.08996 * 109.46916 * 59.99950 * 1 2 3 28 28 H 1.08998 * 109.47285 * 239.99676 * 2 1 3 29 29 H 1.09008 * 109.46749 * 119.99611 * 2 1 3 30 30 H 1.08998 * 109.47388 * 59.99739 * 3 2 1 31 31 H 1.08999 * 109.46872 * 299.99613 * 3 2 1 32 32 H 1.08998 * 109.47154 * 59.99898 * 4 3 2 33 33 H 1.08996 * 109.47279 * 300.00130 * 4 3 2 34 34 H 0.96996 * 120.00011 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.87844 * 311.75991 * 16 14 5 36 36 H 1.09002 * 109.88055 * 72.75308 * 16 14 5 37 37 H 1.08005 * 119.69307 * 1.51472 * 19 18 17 38 38 H 1.07996 * 120.23984 * 179.97438 * 20 19 18 39 39 H 1.08007 * 119.99303 * 179.61541 * 21 20 19 40 40 H 1.08004 * 119.47679 * 180.02562 * 22 21 20 41 41 H 1.09001 * 108.68313 * 145.11746 * 24 23 18 42 42 H 1.09009 * 108.67396 * 263.16558 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2872 3.4685 -1.1862 7 1 4.0427 4.5156 -1.2875 8 6 4.8330 2.7764 -2.2585 9 7 5.4990 1.6602 -2.0508 10 14 4.6225 3.4288 -3.9961 11 1 5.2304 4.7802 -4.0945 12 1 5.2941 2.5135 -4.9534 13 1 3.1760 3.5120 -4.3218 14 6 4.3021 3.5151 1.2684 15 1 4.1576 2.8205 2.0960 16 6 5.7393 4.0538 1.2921 17 16 6.0988 4.5645 2.9973 18 6 4.6592 5.4857 3.4364 19 6 4.7151 6.2665 4.5926 20 6 3.6158 6.9854 5.0073 21 6 2.4471 6.9304 4.2690 22 6 2.3911 6.1671 3.1235 23 6 3.4985 5.4426 2.6881 24 6 3.3359 4.6788 1.4069 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9331 0.9288 0.8908 34 1 5.8802 1.1763 -2.8001 35 1 6.4335 3.2714 0.9854 36 1 5.8256 4.9091 0.6218 37 1 5.6289 6.3075 5.1669 38 1 3.6656 7.5870 5.9028 39 1 1.5787 7.4861 4.5906 40 1 1.4744 6.1307 2.5535 41 1 2.3171 4.2944 1.3564 42 1 3.4923 5.3612 0.5714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172204685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:37 Heat of formation + Delta-G solvation = 23.056276 kcal Electronic energy + Delta-G solvation = -21336.996456 eV Core-core repulsion = 18407.593162 eV Total energy + Delta-G solvation = -2929.403294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -39.13284 -36.98325 -34.58682 -33.08788 -31.17878 -30.74752 -29.60957 -27.42231 -26.35496 -24.47614 -22.58517 -22.46167 -21.23357 -20.14838 -19.69727 -17.27994 -16.38015 -15.56734 -15.39654 -14.94025 -14.79697 -14.51185 -13.92496 -13.65855 -13.44666 -13.26416 -13.00125 -12.79924 -12.62321 -12.17997 -12.08073 -11.83350 -11.37304 -11.23497 -11.03311 -10.98297 -10.93302 -10.75897 -10.48080 -10.45456 -10.28112 -10.02381 -9.81925 -9.62774 -9.52735 -9.28754 -8.55924 -8.47534 -7.06554 -6.62305 -5.87550 -3.48038 1.44842 1.54262 2.11080 2.90519 3.31136 3.37707 3.39923 3.88774 4.39381 4.96995 5.06789 5.11694 5.23722 5.33868 5.48732 5.49509 5.56104 5.57471 5.68977 5.77275 5.78844 6.00565 6.02310 6.11503 6.19435 6.25785 6.29267 6.31925 6.41421 6.48460 6.52390 6.58664 6.63189 6.76299 6.79423 6.83662 6.87475 6.92315 7.12667 7.23112 7.67428 7.74845 8.42922 9.09736 9.70147 10.29198 11.11917 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013511 B = 0.005532 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.859608 B = 5059.974270 C = 6036.044595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.147 3.853 5 N -0.572 5.572 6 C -0.265 4.265 7 H 0.059 0.941 8 C 0.020 3.980 9 N -0.883 5.883 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.179 3.821 15 H 0.062 0.938 16 C -0.084 4.084 17 S -0.165 6.165 18 C -0.068 4.068 19 C -0.104 4.104 20 C -0.119 4.119 21 C -0.128 4.128 22 C -0.113 4.113 23 C -0.065 4.065 24 C -0.101 4.101 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.022 0.978 34 H 0.256 0.744 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.076 0.924 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 4.366 9.654 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.173 4.173 4 C 0.022 3.978 5 N -0.291 5.291 6 C -0.395 4.395 7 H 0.077 0.923 8 C -0.182 4.182 9 N -0.524 5.524 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.216 1.216 13 H -0.208 1.208 14 C 0.070 3.930 15 H 0.080 0.920 16 C -0.233 4.233 17 S 0.078 5.922 18 C -0.181 4.181 19 C -0.127 4.127 20 C -0.139 4.139 21 C -0.149 4.149 22 C -0.133 4.133 23 C -0.072 4.072 24 C -0.140 4.140 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.163 3.899 10.071 11.574 hybrid contribution -1.239 0.690 -1.698 2.213 sum -5.402 4.589 8.373 10.970 Atomic orbital electron populations 1.21768 0.97009 1.00470 1.01312 1.21478 0.94660 0.98554 1.01303 1.22186 1.00196 0.94280 1.00674 1.21005 0.89414 0.85907 1.01520 1.43865 1.73933 1.11567 0.99736 1.18856 1.36524 0.95532 0.88568 0.92326 1.25169 0.96096 0.97834 0.99058 1.69978 1.33891 1.18059 1.30507 0.86509 0.78066 0.78373 0.84656 1.20703 1.21565 1.20813 1.20348 0.89362 0.92486 0.90805 0.91987 1.24481 1.03455 1.04739 0.90653 1.85247 1.23022 1.63472 1.20483 1.21418 0.96692 1.01245 0.98742 1.20872 0.98963 0.97004 0.95902 1.20911 0.93167 0.99891 0.99909 1.20970 0.97969 1.00063 0.95855 1.21263 0.98031 0.97145 0.96814 1.19977 0.92219 0.98061 0.96954 1.20877 1.02000 0.98242 0.92870 0.93660 0.93321 0.93092 0.92346 0.92882 0.94116 0.92405 0.88774 0.95907 0.93368 0.86822 0.89404 0.86020 0.86088 0.86379 0.86254 0.90582 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.96 5.93 -26.72 -0.16 -2.12 16 3 C -0.13 -2.53 5.54 -26.73 -0.15 -2.68 16 4 C 0.15 3.25 5.28 -4.04 -0.02 3.22 16 5 N -0.57 -13.00 2.36 -166.01 -0.39 -13.39 16 6 C -0.27 -6.63 8.31 -15.06 -0.13 -6.76 16 7 H 0.06 1.48 7.04 -52.49 -0.37 1.11 16 8 C 0.02 0.51 4.96 -17.43 -0.09 0.42 16 9 N -0.88 -23.90 11.48 55.49 0.64 -23.26 16 10 Si 0.89 20.67 29.60 -169.99 -5.03 15.64 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.18 3.59 2.55 -68.24 -0.17 3.42 16 15 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 16 C -0.08 -1.65 5.46 37.42 0.20 -1.45 16 17 S -0.17 -2.88 22.00 -107.50 -2.36 -5.25 16 18 C -0.07 -1.14 6.05 -39.09 -0.24 -1.38 16 19 C -0.10 -1.50 9.65 -39.24 -0.38 -1.87 16 20 C -0.12 -1.49 10.06 -39.72 -0.40 -1.89 16 21 C -0.13 -1.61 10.03 -39.72 -0.40 -2.01 16 22 C -0.11 -1.62 9.48 -39.35 -0.37 -2.00 16 23 C -0.07 -1.09 5.77 -104.56 -0.60 -1.70 16 24 C -0.10 -1.83 4.64 -28.77 -0.13 -1.96 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.09 2.36 5.54 -51.93 -0.29 2.07 16 33 H 0.02 0.49 7.88 -51.93 -0.41 0.08 16 34 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.11 2.46 8.14 -51.93 -0.42 2.04 16 36 H 0.09 1.81 7.95 -51.93 -0.41 1.40 16 37 H 0.12 1.57 8.05 -52.48 -0.42 1.14 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 40 H 0.12 1.54 8.01 -52.48 -0.42 1.11 16 41 H 0.08 1.36 8.00 -51.93 -0.42 0.95 16 42 H 0.08 1.57 7.11 -51.92 -0.37 1.20 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -26.02 347.20 -11.45 -37.47 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.87 Total: 3.97 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -2.66 Total: -20.41 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.24 Total: -36.66 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.36 Total: -5.25 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -26.02 -11.45 -37.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172204685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.526 kcal (2) G-P(sol) polarization free energy of solvation -26.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds