Wall clock time and date at job start Tue Mar 31 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46723 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46786 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00034 * 269.99768 * 5 4 3 7 7 H 1.07998 * 119.99738 * 141.71191 * 6 5 4 8 8 C 1.38808 * 120.00305 * 321.72319 * 6 5 4 9 9 N 1.31624 * 119.99607 * 339.26251 * 8 6 5 10 10 Si 1.86795 * 120.00617 * 159.26466 * 8 6 5 11 11 H 1.48505 * 109.47157 * 59.99643 * 10 8 6 12 12 H 1.48503 * 109.47605 * 179.97438 * 10 8 6 13 13 H 1.48504 * 109.47291 * 300.00100 * 10 8 6 14 14 C 1.46501 * 120.00087 * 90.00385 * 5 4 3 15 15 H 1.09004 * 109.54673 * 5.34329 * 14 5 4 16 16 C 1.53499 * 109.55387 * 125.64806 * 14 5 4 17 17 S 1.81601 * 107.36830 * 192.29541 * 16 14 5 18 18 C 1.76458 * 102.64756 * 313.59641 * 17 16 14 19 19 C 1.39631 * 117.73063 * 193.19683 * 18 17 16 20 20 C 1.37740 * 120.61414 * 181.48585 * 19 18 17 21 21 C 1.38344 * 119.51988 * 0.02562 * 20 19 18 22 22 C 1.37766 * 120.01104 * 359.59705 * 21 20 19 23 23 C 1.38168 * 122.29648 * 13.90114 * 18 17 16 24 24 C 1.50045 * 124.70743 * 357.11229 * 23 18 17 25 25 H 1.08998 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47285 * 300.00324 * 1 2 3 27 27 H 1.08996 * 109.46916 * 59.99950 * 1 2 3 28 28 H 1.08998 * 109.47285 * 239.99676 * 2 1 3 29 29 H 1.09008 * 109.46749 * 119.99611 * 2 1 3 30 30 H 1.08998 * 109.47388 * 59.99739 * 3 2 1 31 31 H 1.08999 * 109.46872 * 299.99613 * 3 2 1 32 32 H 1.08998 * 109.47154 * 59.99898 * 4 3 2 33 33 H 1.08996 * 109.47279 * 300.00130 * 4 3 2 34 34 H 0.96996 * 120.00011 * 179.97438 * 9 8 6 35 35 H 1.09006 * 109.87844 * 311.75991 * 16 14 5 36 36 H 1.09002 * 109.88055 * 72.75308 * 16 14 5 37 37 H 1.08005 * 119.69307 * 1.51472 * 19 18 17 38 38 H 1.07996 * 120.23984 * 179.97438 * 20 19 18 39 39 H 1.08007 * 119.99303 * 179.61541 * 21 20 19 40 40 H 1.08004 * 119.47679 * 180.02562 * 22 21 20 41 41 H 1.09001 * 108.68313 * 145.11746 * 24 23 18 42 42 H 1.09009 * 108.67396 * 263.16558 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2872 3.4685 -1.1862 7 1 4.0427 4.5156 -1.2875 8 6 4.8330 2.7764 -2.2585 9 7 5.4990 1.6602 -2.0508 10 14 4.6225 3.4288 -3.9961 11 1 5.2304 4.7802 -4.0945 12 1 5.2941 2.5135 -4.9534 13 1 3.1760 3.5120 -4.3218 14 6 4.3021 3.5151 1.2684 15 1 4.1576 2.8205 2.0960 16 6 5.7393 4.0538 1.2921 17 16 6.0988 4.5645 2.9973 18 6 4.6592 5.4857 3.4364 19 6 4.7151 6.2665 4.5926 20 6 3.6158 6.9854 5.0073 21 6 2.4471 6.9304 4.2690 22 6 2.3911 6.1671 3.1235 23 6 3.4985 5.4426 2.6881 24 6 3.3359 4.6788 1.4069 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9285 -0.8891 33 1 3.9331 0.9288 0.8908 34 1 5.8802 1.1763 -2.8001 35 1 6.4335 3.2714 0.9854 36 1 5.8256 4.9091 0.6218 37 1 5.6289 6.3075 5.1669 38 1 3.6656 7.5870 5.9028 39 1 1.5787 7.4861 4.5906 40 1 1.4744 6.1307 2.5535 41 1 2.3171 4.2944 1.3564 42 1 3.4923 5.3612 0.5714 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172204685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:31 Heat of formation + Delta-G solvation = 13.524844 kcal Electronic energy + Delta-G solvation = -21337.409770 eV Core-core repulsion = 18407.593162 eV Total energy + Delta-G solvation = -2929.816608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34371 -38.60803 -36.00852 -34.73749 -32.80642 -31.87671 -31.06087 -29.06586 -27.78213 -26.25800 -23.98545 -23.61571 -22.58803 -21.68032 -21.32754 -18.58114 -18.15068 -17.10603 -16.68278 -16.38293 -16.30846 -16.08974 -15.32916 -15.12219 -14.86807 -14.80703 -14.38205 -14.07705 -13.90463 -13.69279 -13.46450 -13.28707 -12.93763 -12.89456 -12.73146 -12.53591 -12.30149 -12.24705 -12.06505 -11.88927 -11.79973 -11.62802 -11.38101 -11.22603 -11.05937 -10.59159 -10.49797 -9.63474 -8.62750 -8.32223 -7.83060 -5.47048 0.30901 0.43467 0.72191 1.44264 1.44370 1.47821 1.52894 2.48581 2.78431 3.23339 3.50191 3.88786 3.91384 3.98128 4.12479 4.19252 4.25917 4.35819 4.37643 4.43788 4.54617 4.59380 4.65729 4.70824 4.77359 4.88630 4.96092 5.03450 5.07861 5.08642 5.15026 5.21379 5.28784 5.32719 5.43686 5.48280 5.55176 5.58414 5.62341 5.69465 5.87245 6.05594 6.46295 7.15917 7.81199 8.36568 9.12304 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013511 B = 0.005532 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.859608 B = 5059.974270 C = 6036.044595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.119 4.119 4 C 0.148 3.852 5 N -0.584 5.584 6 C -0.260 4.260 7 H 0.054 0.946 8 C -0.026 4.026 9 N -0.912 5.912 10 Si 0.948 3.052 11 H -0.278 1.278 12 H -0.294 1.294 13 H -0.279 1.279 14 C 0.182 3.818 15 H 0.058 0.942 16 C -0.079 4.079 17 S -0.156 6.156 18 C -0.092 4.092 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.088 4.088 24 C -0.084 4.084 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.038 0.962 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.251 0.749 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.155 0.845 40 H 0.132 0.868 41 H 0.076 0.924 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.332 5.976 11.793 15.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.158 4.158 4 C 0.022 3.978 5 N -0.304 5.304 6 C -0.390 4.390 7 H 0.071 0.929 8 C -0.224 4.224 9 N -0.555 5.555 10 Si 0.777 3.223 11 H -0.204 1.204 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.073 3.927 15 H 0.076 0.924 16 C -0.229 4.229 17 S 0.087 5.913 18 C -0.205 4.205 19 C -0.134 4.134 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.139 4.139 23 C -0.095 4.095 24 C -0.124 4.124 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.061 0.939 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.153 0.847 38 H 0.177 0.823 39 H 0.172 0.828 40 H 0.150 0.850 41 H 0.095 0.905 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.141 5.529 12.228 14.758 hybrid contribution -0.650 0.281 -2.194 2.306 sum -6.791 5.810 10.034 13.437 Atomic orbital electron populations 1.21712 0.94665 1.01962 1.01639 1.21444 0.96680 0.96284 1.01281 1.21976 0.97628 0.96259 0.99967 1.20933 0.91518 0.85385 0.99915 1.44020 1.74416 1.11798 1.00161 1.18970 1.35182 0.95331 0.89510 0.92873 1.25747 0.96458 0.98348 1.01858 1.70103 1.35337 1.19277 1.30807 0.85656 0.77815 0.77683 0.81166 1.20416 1.21986 1.20552 1.20388 0.90018 0.92964 0.89299 0.92367 1.24141 1.02761 1.03207 0.92753 1.85074 1.24288 1.64254 1.17692 1.21550 0.96005 1.02643 1.00279 1.21130 1.00470 0.96676 0.95089 1.21378 0.92043 0.98681 1.00606 1.21416 0.99228 0.98708 0.94429 1.21468 0.97616 0.96989 0.97789 1.19876 0.93515 0.99485 0.96619 1.20599 1.01106 0.97002 0.93654 0.91614 0.92416 0.93346 0.93345 0.91992 0.93363 0.94324 0.91790 0.96033 0.93939 0.89545 0.91017 0.84723 0.82290 0.82760 0.84966 0.90528 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.12 -3.76 5.93 30.60 0.18 -3.58 16 3 C -0.12 -4.54 5.54 30.60 0.17 -4.37 16 4 C 0.15 6.77 5.28 86.38 0.46 7.23 16 5 N -0.58 -27.64 2.36 -679.14 -1.61 -29.25 16 6 C -0.26 -13.47 8.31 84.03 0.70 -12.77 16 7 H 0.05 2.79 7.04 -2.91 -0.02 2.76 16 8 C -0.03 -1.38 4.96 84.86 0.42 -0.96 16 9 N -0.91 -51.47 11.48 21.65 0.25 -51.22 16 10 Si 0.95 43.61 29.60 68.60 2.03 45.64 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.18 7.55 2.55 44.79 0.11 7.66 16 15 H 0.06 2.44 7.67 -2.39 -0.02 2.42 16 16 C -0.08 -3.27 5.46 72.15 0.39 -2.88 16 17 S -0.16 -5.48 22.00 -56.49 -1.24 -6.72 16 18 C -0.09 -2.98 6.05 22.59 0.14 -2.84 16 19 C -0.11 -2.86 9.65 22.49 0.22 -2.65 16 20 C -0.11 -2.19 10.06 22.18 0.22 -1.97 16 21 C -0.12 -2.43 10.03 22.18 0.22 -2.20 16 22 C -0.12 -3.10 9.48 22.42 0.21 -2.89 16 23 C -0.09 -2.87 5.77 -19.83 -0.11 -2.98 16 24 C -0.08 -3.11 4.64 29.28 0.14 -2.97 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 3.36 5.54 -2.39 -0.01 3.35 16 33 H 0.02 0.96 7.88 -2.39 -0.02 0.94 16 34 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.09 4.01 8.14 -2.38 -0.02 3.99 16 36 H 0.07 3.14 7.95 -2.39 -0.02 3.12 16 37 H 0.13 3.07 8.05 -2.91 -0.02 3.05 16 38 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.13 3.04 8.01 -2.91 -0.02 3.02 16 41 H 0.08 2.74 8.00 -2.39 -0.02 2.73 16 42 H 0.06 2.47 7.11 -2.38 -0.02 2.45 16 Total: -1.00 -58.10 347.20 4.59 -53.51 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.98 Total: 19.14 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 4.18 Total: -31.10 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -1.36 Total: -80.47 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.24 Total: -6.72 kcal Total: -58.10 4.59 -53.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172204685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.038 kcal (2) G-P(sol) polarization free energy of solvation -58.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds