Wall clock time and date at job start Tue Mar 31 2020 06:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46900 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47313 * 119.99835 * 10 8 6 13 13 H 1.48500 * 109.47238 * 240.00109 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.50698 * 109.47212 * 179.97438 * 15 14 2 17 17 C 1.35132 * 126.40454 * 95.02917 * 16 15 14 18 18 N 1.33499 * 108.61101 * 180.02562 * 17 16 15 19 19 C 1.32611 * 109.15240 * 359.97438 * 18 17 16 20 20 C 1.40914 * 132.29150 * 180.02562 * 19 18 17 21 21 C 1.36014 * 119.37271 * 179.21110 * 20 19 18 22 22 C 1.40617 * 119.68578 * 0.64471 * 21 20 19 23 23 F 1.35099 * 119.87683 * 179.60645 * 22 21 20 24 24 C 1.35126 * 120.24557 * 359.58114 * 22 21 20 25 25 N 1.36613 * 120.57587 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 30 30 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 31 31 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 32 32 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 33 33 H 0.97002 * 119.99985 * 180.02562 * 9 8 6 34 34 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 35 35 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 36 36 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 37 37 H 1.07993 * 125.69779 * 359.96429 * 17 16 15 38 38 H 1.08003 * 120.31314 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.15929 * 180.20298 * 21 20 19 40 40 H 1.07996 * 119.71442 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 6.2691 -0.7755 -2.0005 10 14 6.0413 -2.2408 -4.3407 11 1 4.8913 -2.8124 -5.0865 12 1 6.7646 -1.2768 -5.2084 13 1 6.9630 -3.3339 -3.9396 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5872 -0.5219 3.5561 17 6 3.8666 -0.5771 3.9874 18 7 3.9134 -1.3333 5.0866 19 6 2.6918 -1.7643 5.3705 20 6 2.1903 -2.5794 6.4047 21 6 0.8581 -2.8491 6.4553 22 6 0.0034 -2.3237 5.4700 23 9 -1.3193 -2.5956 5.5120 24 6 0.5000 -1.5474 4.4818 25 7 1.8351 -1.2633 4.4256 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 3.8533 0.4369 -1.3572 32 1 3.9995 -1.0728 -0.4258 33 1 7.2197 -0.8012 -2.1916 34 1 2.9173 -1.1205 1.0288 35 1 2.7588 1.0462 2.1183 36 1 1.0870 0.6163 2.5525 37 1 4.7106 -0.0915 3.5204 38 1 2.8557 -2.9762 7.1573 39 1 0.4597 -3.4697 7.2443 40 1 -0.1643 -1.1480 3.7297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:14 Heat of formation + Delta-G solvation = 31.806659 kcal Electronic energy + Delta-G solvation = -22516.421104 eV Core-core repulsion = 19053.476829 eV Total energy + Delta-G solvation = -3462.944274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.28560 -42.93828 -37.59238 -37.05509 -34.16205 -33.25209 -31.90471 -29.90721 -29.49530 -28.51652 -25.65114 -24.73606 -23.68715 -22.65898 -21.49444 -21.11807 -19.65221 -18.03035 -17.95820 -16.55216 -16.50615 -16.43651 -15.62787 -15.48953 -15.00937 -14.76848 -14.56632 -14.50149 -14.05093 -13.79032 -13.28248 -12.91303 -12.64339 -12.43248 -12.40960 -11.92887 -11.66366 -11.64866 -11.50139 -11.17260 -11.15652 -10.94577 -10.51436 -10.36916 -10.16213 -9.81931 -9.32959 -9.07230 -8.83063 -8.39640 -8.20973 -7.93239 -6.03427 -4.05495 0.40866 0.94089 2.29155 2.65592 3.28051 3.29593 3.37455 3.41368 3.76523 3.98237 4.24040 4.43960 4.47608 4.52122 4.64160 5.03242 5.15551 5.29760 5.32953 5.38071 5.41973 5.51320 5.55079 5.61844 5.67456 5.80140 5.94098 6.06269 6.24018 6.25969 6.40841 6.44530 6.52961 6.82416 6.84480 7.01386 7.32761 7.55688 7.70615 7.74074 7.78080 7.95436 8.38905 9.01081 9.59113 11.07766 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.003477 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.641133 B = 8052.051197 C = 8762.512777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.042 0.958 4 C -0.114 4.114 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.687 5.687 15 C 0.133 3.867 16 C -0.038 4.038 17 C 0.044 3.956 18 N -0.479 5.479 19 C 0.202 3.798 20 C -0.044 4.044 21 C -0.137 4.137 22 C 0.072 3.928 23 F -0.124 7.124 24 C 0.038 3.962 25 N -0.340 5.340 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.013 0.987 32 H 0.015 0.985 33 H 0.260 0.740 34 H 0.358 0.642 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.186 0.814 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 0.217 16.656 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.060 0.940 4 C -0.152 4.152 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.323 5.323 15 C 0.003 3.997 16 C -0.152 4.152 17 C -0.108 4.108 18 N -0.199 5.199 19 C -0.040 4.040 20 C -0.064 4.064 21 C -0.161 4.161 22 C 0.050 3.950 23 F -0.103 7.103 24 C -0.087 4.087 25 N -0.012 5.012 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.181 0.819 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.203 0.797 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.270 -0.142 17.226 21.150 hybrid contribution 0.261 0.169 -1.596 1.626 sum -12.009 0.027 15.630 19.711 Atomic orbital electron populations 1.21807 0.95745 1.01707 1.00244 1.21633 0.94441 0.96286 0.90330 0.94048 1.21830 0.99800 0.99427 0.94149 1.19134 0.88640 0.96921 0.97004 1.21254 0.91966 1.34331 1.08274 0.92655 1.25016 0.97089 0.95575 0.96702 1.69956 1.02355 1.44086 1.36966 0.86556 0.78873 0.79509 0.83194 1.19752 1.21032 1.20987 1.60698 1.35424 1.32065 1.04077 1.20296 1.00439 0.92756 0.86191 1.21281 0.91472 1.05016 0.97388 1.22479 0.95300 0.99306 0.93708 1.70783 1.17884 1.14870 1.16325 1.20962 0.86250 1.02556 0.94271 1.20121 0.94718 0.95687 0.95901 1.21039 0.92776 1.02517 0.99741 1.16567 0.79029 1.01768 0.97648 1.91548 1.30218 1.92327 1.96182 1.21220 0.84536 1.01886 1.01012 1.42290 1.05922 1.32518 1.20438 0.93991 0.92758 0.92394 0.92491 0.92573 0.96871 0.96646 0.93040 0.81944 0.92049 0.90749 0.79686 0.82181 0.82943 0.81003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.41 37.16 0.35 -1.48 16 2 C 0.08 1.32 2.65 -67.71 -0.18 1.14 16 3 H 0.04 0.67 7.80 -51.93 -0.40 0.27 16 4 C -0.11 -2.25 4.74 -26.73 -0.13 -2.38 16 5 C 0.02 0.50 4.80 -27.88 -0.13 0.36 16 6 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 7 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 10 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 N -0.69 -10.73 6.30 -107.99 -0.68 -11.41 16 15 C 0.13 1.75 5.91 -4.98 -0.03 1.72 16 16 C -0.04 -0.53 6.54 -81.48 -0.53 -1.06 16 17 C 0.04 0.65 11.75 -17.93 -0.21 0.44 16 18 N -0.48 -7.41 11.32 -12.79 -0.14 -7.55 16 19 C 0.20 2.74 7.81 -156.06 -1.22 1.53 16 20 C -0.04 -0.44 10.10 -39.37 -0.40 -0.83 16 21 C -0.14 -1.16 10.05 -39.48 -0.40 -1.56 16 22 C 0.07 0.72 7.25 -39.79 -0.29 0.43 16 23 F -0.12 -1.24 17.26 2.25 0.04 -1.20 16 24 C 0.04 0.42 10.82 -16.53 -0.18 0.24 16 25 N -0.34 -4.48 2.95 -58.39 -0.17 -4.65 16 26 H 0.04 0.49 7.45 -51.93 -0.39 0.11 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.02 0.40 6.43 -51.93 -0.33 0.06 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.36 6.47 6.46 -39.29 -0.25 6.22 16 35 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.07 0.87 7.44 -51.93 -0.39 0.48 16 37 H 0.19 2.41 8.06 -52.49 -0.42 1.98 16 38 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 40 H 0.17 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -31.14 341.00 -9.39 -40.53 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.53 Total: 2.99 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.75 Total: -14.72 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.26 Total: -49.29 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.14 -9.39 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.340 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds