Wall clock time and date at job start Tue Mar 31 2020 06:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.50697 * 109.46774 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00429 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00106 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 120.00034 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46900 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47313 * 119.99835 * 10 8 6 13 13 H 1.48500 * 109.47238 * 240.00109 * 10 8 6 14 14 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 15 15 C 1.46900 * 110.99890 * 274.99873 * 14 2 1 16 16 C 1.50698 * 109.47212 * 179.97438 * 15 14 2 17 17 C 1.35132 * 126.40454 * 95.02917 * 16 15 14 18 18 N 1.33499 * 108.61101 * 180.02562 * 17 16 15 19 19 C 1.32611 * 109.15240 * 359.97438 * 18 17 16 20 20 C 1.40914 * 132.29150 * 180.02562 * 19 18 17 21 21 C 1.36014 * 119.37271 * 179.21110 * 20 19 18 22 22 C 1.40617 * 119.68578 * 0.64471 * 21 20 19 23 23 F 1.35099 * 119.87683 * 179.60645 * 22 21 20 24 24 C 1.35126 * 120.24557 * 359.58114 * 22 21 20 25 25 N 1.36613 * 120.57587 * 0.02562 * 24 22 21 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 30 30 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 31 31 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 32 32 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 33 33 H 0.97002 * 119.99985 * 180.02562 * 9 8 6 34 34 H 1.00901 * 111.00276 * 151.05158 * 14 2 1 35 35 H 1.09002 * 109.47391 * 300.00224 * 15 14 2 36 36 H 1.09005 * 109.47266 * 59.99895 * 15 14 2 37 37 H 1.07993 * 125.69779 * 359.96429 * 17 16 15 38 38 H 1.08003 * 120.31314 * 359.97438 * 20 19 18 39 39 H 1.08004 * 120.15929 * 180.20298 * 21 20 19 40 40 H 1.07996 * 119.71442 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0672 -1.3233 -2.5443 7 1 3.3687 -1.8031 -3.2138 8 6 5.4185 -1.3602 -2.8155 9 7 6.2691 -0.7755 -2.0005 10 14 6.0413 -2.2408 -4.3407 11 1 4.8913 -2.8124 -5.0865 12 1 6.7646 -1.2768 -5.2084 13 1 6.9630 -3.3339 -3.9396 14 7 2.0196 -0.6925 1.1994 15 6 2.0824 0.2225 2.3469 16 6 2.5872 -0.5219 3.5561 17 6 3.8666 -0.5771 3.9874 18 7 3.9134 -1.3333 5.0866 19 6 2.6918 -1.7643 5.3705 20 6 2.1903 -2.5794 6.4047 21 6 0.8581 -2.8491 6.4553 22 6 0.0034 -2.3237 5.4700 23 9 -1.3193 -2.5956 5.5120 24 6 0.5000 -1.5474 4.4818 25 7 1.8351 -1.2633 4.4256 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1369 31 1 3.8533 0.4369 -1.3572 32 1 3.9995 -1.0728 -0.4258 33 1 7.2197 -0.8012 -2.1916 34 1 2.9173 -1.1205 1.0288 35 1 2.7588 1.0462 2.1183 36 1 1.0870 0.6163 2.5525 37 1 4.7106 -0.0915 3.5204 38 1 2.8557 -2.9762 7.1573 39 1 0.4597 -3.4697 7.2443 40 1 -0.1643 -1.1480 3.7297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490370.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:10 Heat of formation + Delta-G solvation = 14.127094 kcal Electronic energy + Delta-G solvation = -22517.187747 eV Core-core repulsion = 19053.476829 eV Total energy + Delta-G solvation = -3463.710918 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -50.08806 -43.90461 -38.78614 -38.08009 -35.51654 -34.80996 -33.31715 -31.21909 -30.70408 -29.57761 -27.18432 -26.08551 -24.64333 -23.61626 -23.20483 -22.12279 -21.09520 -19.01658 -18.81559 -18.46838 -17.44047 -17.34655 -16.78608 -16.56819 -16.53616 -16.09579 -15.74237 -15.51184 -15.09757 -14.77690 -14.46761 -14.27155 -14.12783 -14.03157 -13.53326 -13.15368 -13.07800 -12.87192 -12.75769 -12.61962 -12.44279 -12.34131 -12.03360 -11.84495 -11.62680 -11.31756 -11.19122 -10.95874 -10.55104 -9.78717 -9.43647 -8.90265 -8.20488 -6.30441 -0.40858 0.05446 1.36322 1.38303 1.39415 1.51826 1.65489 2.36078 2.40217 2.90838 3.12607 3.13135 3.31669 3.43798 3.68018 3.77303 3.99319 4.06689 4.22941 4.34066 4.37938 4.48430 4.50753 4.59496 4.78178 4.79600 4.87077 4.97589 5.00160 5.02986 5.07306 5.21695 5.40919 5.44154 5.49939 5.53618 5.70034 5.84751 5.91827 6.14492 6.25599 6.31254 6.71627 6.86266 7.38655 8.90755 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.003477 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.641133 B = 8052.051197 C = 8762.512777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.088 3.912 3 H 0.038 0.962 4 C -0.101 4.101 5 C 0.027 3.973 6 C -0.542 4.542 7 H 0.056 0.944 8 C 0.002 3.998 9 N -0.929 5.929 10 Si 0.959 3.041 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.280 1.280 14 N -0.688 5.688 15 C 0.140 3.860 16 C -0.050 4.050 17 C 0.024 3.976 18 N -0.516 5.516 19 C 0.192 3.808 20 C -0.055 4.055 21 C -0.115 4.115 22 C 0.080 3.920 23 F -0.120 7.120 24 C 0.019 3.981 25 N -0.343 5.343 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.059 0.941 31 H -0.012 1.012 32 H -0.002 1.002 33 H 0.262 0.738 34 H 0.340 0.660 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.186 0.814 38 H 0.186 0.814 39 H 0.192 0.808 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.527 -0.690 17.290 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.022 4.022 3 H 0.056 0.944 4 C -0.139 4.139 5 C -0.010 4.010 6 C -0.580 4.580 7 H 0.074 0.926 8 C -0.196 4.196 9 N -0.569 5.569 10 Si 0.785 3.215 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.206 1.206 14 N -0.321 5.321 15 C 0.010 3.990 16 C -0.163 4.163 17 C -0.128 4.128 18 N -0.236 5.236 19 C -0.051 4.051 20 C -0.075 4.075 21 C -0.138 4.138 22 C 0.058 3.942 23 F -0.099 7.099 24 C -0.104 4.104 25 N -0.014 5.014 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.007 0.993 32 H 0.016 0.984 33 H 0.071 0.929 34 H 0.160 0.840 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.203 0.797 38 H 0.203 0.797 39 H 0.209 0.791 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.325 -1.037 17.856 22.916 hybrid contribution 0.811 0.408 -1.700 1.927 sum -13.514 -0.629 16.156 21.072 Atomic orbital electron populations 1.21724 0.92979 1.02069 1.01834 1.21562 0.96448 0.95357 0.88787 0.94360 1.21638 0.96172 0.99673 0.96453 1.19008 0.92107 0.94658 0.95274 1.21716 0.92469 1.34538 1.09319 0.92553 1.25909 0.97417 0.96344 0.99904 1.70079 1.02692 1.45339 1.38829 0.85480 0.78409 0.78327 0.79334 1.18741 1.20357 1.20570 1.60780 1.34159 1.32652 1.04547 1.20291 1.01522 0.92114 0.85048 1.21227 0.91394 1.05831 0.97867 1.22620 0.96022 0.99955 0.94187 1.70720 1.19405 1.16317 1.17188 1.21585 0.85956 1.02590 0.94997 1.20505 0.95803 0.95494 0.95661 1.21446 0.91785 1.01111 0.99497 1.16736 0.79245 1.00844 0.97376 1.91567 1.30066 1.92160 1.96116 1.21516 0.83888 1.02857 1.02171 1.42337 1.06600 1.32333 1.20158 0.91848 0.91758 0.92604 0.93070 0.92257 0.99343 0.98379 0.92875 0.83999 0.92147 0.88684 0.79656 0.79700 0.79109 0.79899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.41 71.98 0.68 -2.47 16 2 C 0.09 2.76 2.65 44.92 0.12 2.88 16 3 H 0.04 1.24 7.80 -2.39 -0.02 1.22 16 4 C -0.10 -4.03 4.74 30.60 0.15 -3.88 16 5 C 0.03 1.36 4.80 29.85 0.14 1.51 16 6 C -0.54 -30.74 9.11 25.60 0.23 -30.50 16 7 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 8 C 0.00 0.13 5.46 84.66 0.46 0.59 16 9 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 10 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 11 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 14 N -0.69 -21.59 6.30 -495.56 -3.12 -24.71 16 15 C 0.14 3.67 5.91 85.56 0.51 4.18 16 16 C -0.05 -1.40 6.54 41.07 0.27 -1.13 16 17 C 0.02 0.74 11.75 83.72 0.98 1.73 16 18 N -0.52 -16.45 11.32 -194.37 -2.20 -18.65 16 19 C 0.19 5.13 7.81 134.10 1.05 6.18 16 20 C -0.05 -0.97 10.10 22.41 0.23 -0.74 16 21 C -0.11 -1.56 10.05 22.33 0.22 -1.33 16 22 C 0.08 1.38 7.25 22.13 0.16 1.54 16 23 F -0.12 -2.03 17.26 44.97 0.78 -1.25 16 24 C 0.02 0.40 10.82 83.23 0.90 1.30 16 25 N -0.34 -8.87 2.95 -338.66 -1.00 -9.86 16 26 H 0.06 1.30 7.45 -2.39 -0.02 1.28 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 32 H 0.00 -0.11 6.43 -2.39 -0.02 -0.12 16 33 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.34 12.83 6.46 -89.69 -0.58 12.25 16 35 H 0.06 1.59 8.06 -2.39 -0.02 1.57 16 36 H 0.09 2.07 7.44 -2.38 -0.02 2.06 16 37 H 0.19 5.32 8.06 -2.91 -0.02 5.30 16 38 H 0.19 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.19 1.13 8.06 -2.91 -0.02 1.10 16 40 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -68.36 341.00 3.33 -65.03 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.47 Total: 18.94 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 6.10 Total: -20.16 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -6.03 Total: -109.08 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.36 3.33 -65.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490370.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.158 kcal (2) G-P(sol) polarization free energy of solvation -68.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds