Wall clock time and date at job start Tue Mar 31 2020 06:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46547 * 2 1 4 4 C 1.53002 * 109.47253 * 120.00008 * 2 1 3 5 5 C 1.53002 * 109.46959 * 185.00102 * 4 2 1 6 6 C 1.50702 * 109.46878 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99672 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00200 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00057 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47000 * 59.99796 * 10 8 6 12 12 H 1.48496 * 109.47724 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47208 * 300.00525 * 10 8 6 14 14 N 1.46904 * 109.47044 * 240.00497 * 2 1 3 15 15 C 1.46894 * 111.00317 * 84.99629 * 14 2 1 16 16 C 1.50701 * 109.47213 * 179.97438 * 15 14 2 17 17 C 1.35120 * 126.40629 * 94.97661 * 16 15 14 18 18 N 1.33494 * 108.61325 * 180.02562 * 17 16 15 19 19 C 1.32608 * 109.15390 * 0.02562 * 18 17 16 20 20 C 1.40916 * 132.29299 * 179.97438 * 19 18 17 21 21 C 1.36014 * 119.37371 * 180.02562 * 20 19 18 22 22 C 1.40612 * 119.68373 * 359.97438 * 21 20 19 23 23 F 1.35103 * 119.87110 * 180.02562 * 22 21 20 24 24 C 1.35129 * 120.25238 * 0.02562 * 22 21 20 25 25 N 1.36601 * 120.57057 * 359.97438 * 24 22 21 26 26 H 1.08999 * 109.47406 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47101 * 299.99574 * 1 2 3 28 28 H 1.09005 * 109.47463 * 60.00041 * 1 2 3 29 29 H 1.08995 * 109.47050 * 305.00072 * 4 2 1 30 30 H 1.09001 * 109.46977 * 65.00191 * 4 2 1 31 31 H 1.08997 * 109.46707 * 299.99868 * 5 4 2 32 32 H 1.08996 * 109.46842 * 59.99958 * 5 4 2 33 33 H 0.97000 * 119.99870 * 179.97438 * 9 8 6 34 34 H 1.00902 * 110.99858 * 321.04281 * 14 2 1 35 35 H 1.09005 * 109.46842 * 59.99945 * 15 14 2 36 36 H 1.08998 * 109.47378 * 300.00515 * 15 14 2 37 37 H 1.07998 * 125.69898 * 0.05750 * 17 16 15 38 38 H 1.08001 * 120.31393 * 0.04832 * 20 19 18 39 39 H 1.07998 * 120.15242 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.71095 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5438 7 1 3.3689 -1.8053 3.2125 8 6 5.4185 -1.3613 2.8149 9 7 6.2690 -0.7758 2.0003 10 14 6.0413 -2.2419 4.3400 11 1 5.6478 -3.6726 4.2809 12 1 7.5213 -2.1372 4.4026 13 1 5.4497 -1.6155 5.5496 14 7 2.0196 -0.6924 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5884 -0.5214 -3.5558 17 6 1.8334 -1.1006 -4.5151 18 7 2.6444 -1.6599 -5.4159 19 6 3.9037 -1.4529 -5.0554 20 6 5.1308 -1.8241 -5.6405 21 6 6.2944 -1.4661 -5.0340 22 6 6.2576 -0.7320 -3.8352 23 9 7.4112 -0.3740 -3.2299 24 6 5.0731 -0.3834 -3.2864 25 7 3.8982 -0.7375 -3.8867 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.9994 -1.0727 0.4259 32 1 3.8531 0.4370 1.3573 33 1 7.2197 -0.8016 2.1913 34 1 1.4495 -1.4979 -1.4101 35 1 2.7588 1.0463 -2.1182 36 1 1.0870 0.6164 -2.5525 37 1 0.7539 -1.1092 -4.5480 38 1 5.1471 -2.3872 -6.5619 39 1 7.2419 -1.7443 -5.4711 40 1 5.0551 0.1807 -2.3656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:18 Heat of formation + Delta-G solvation = 33.278017 kcal Electronic energy + Delta-G solvation = -22860.908529 eV Core-core repulsion = 19398.028057 eV Total energy + Delta-G solvation = -3462.880471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.93974 -42.84996 -37.54540 -36.96608 -34.05092 -33.22409 -31.83928 -29.79809 -29.41438 -28.31556 -25.44650 -24.76118 -23.60411 -22.54980 -21.42712 -21.04714 -19.91831 -17.86471 -17.73377 -16.40106 -16.33005 -16.14335 -15.48440 -15.28009 -14.84797 -14.68645 -14.43279 -14.32378 -13.94685 -13.79298 -13.16928 -12.86726 -12.78862 -12.38639 -12.37366 -11.90665 -11.64456 -11.51552 -11.39361 -11.20098 -11.03233 -10.84182 -10.49374 -10.33722 -10.09599 -9.69219 -9.26824 -8.96677 -8.72112 -8.27609 -8.07003 -7.80909 -5.92094 -3.93043 0.59192 1.07922 2.42408 2.72876 3.36525 3.37598 3.41046 3.43405 3.98974 4.08845 4.40971 4.50735 4.51596 4.70771 4.78057 5.04011 5.17756 5.28524 5.37931 5.43838 5.47634 5.49497 5.57444 5.63356 5.72309 5.77526 5.96410 6.06977 6.22075 6.32608 6.42095 6.53215 6.59648 6.82678 6.94667 7.22831 7.36260 7.66063 7.77477 7.79481 8.02026 8.16198 8.53671 9.14907 9.69891 11.19001 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.005108 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.531653 B = 5480.040985 C = 7361.088970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.084 3.916 3 H 0.073 0.927 4 C -0.099 4.099 5 C 0.031 3.969 6 C -0.520 4.520 7 H 0.050 0.950 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.887 3.113 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.671 5.671 15 C 0.134 3.866 16 C -0.040 4.040 17 C 0.034 3.966 18 N -0.487 5.487 19 C 0.207 3.793 20 C -0.056 4.056 21 C -0.127 4.127 22 C 0.077 3.923 23 F -0.118 7.118 24 C 0.043 3.957 25 N -0.335 5.335 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.029 0.971 32 H 0.006 0.994 33 H 0.259 0.741 34 H 0.340 0.660 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.180 0.820 38 H 0.159 0.841 39 H 0.153 0.847 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 2.122 -15.163 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.025 4.025 3 H 0.091 0.909 4 C -0.137 4.137 5 C -0.006 4.006 6 C -0.558 4.558 7 H 0.068 0.932 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.715 3.285 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.302 5.302 15 C 0.004 3.996 16 C -0.155 4.155 17 C -0.119 4.119 18 N -0.206 5.206 19 C -0.036 4.036 20 C -0.076 4.076 21 C -0.152 4.152 22 C 0.055 3.945 23 F -0.096 7.096 24 C -0.081 4.081 25 N -0.006 5.006 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.024 0.976 33 H 0.068 0.932 34 H 0.158 0.842 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.197 0.803 38 H 0.177 0.823 39 H 0.171 0.829 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.214 1.864 -15.645 16.596 hybrid contribution -0.018 0.067 1.632 1.634 sum -5.232 1.931 -14.013 15.082 Atomic orbital electron populations 1.22536 0.98310 1.01723 1.01406 1.21761 0.91172 0.98305 0.91263 0.90923 1.21635 1.00591 0.98465 0.92985 1.18974 0.88303 0.96352 0.96960 1.21293 0.91857 1.34150 1.08520 0.93163 1.24979 0.97107 0.95721 0.96497 1.69946 1.02239 1.44297 1.36975 0.86750 0.77615 0.80314 0.83830 1.20373 1.21362 1.20388 1.60586 1.58294 1.08931 1.02393 1.20277 0.99284 0.94027 0.85988 1.21207 0.80709 1.11327 1.02215 1.22264 0.99707 0.98519 0.91418 1.70729 0.97657 1.23999 1.28250 1.20916 0.95038 1.00014 0.87643 1.20061 0.86943 0.99973 1.00600 1.21107 1.00053 0.99425 0.94568 1.16596 0.81568 1.02180 0.94177 1.91596 1.45429 1.90032 1.82568 1.21447 0.82923 1.03297 1.00432 1.42262 1.05392 1.34817 1.18116 0.92647 0.92120 0.93597 0.93347 0.93424 0.95265 0.97570 0.93153 0.84157 0.90220 0.92743 0.80326 0.82321 0.82894 0.80223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.16 37.16 0.34 -1.88 16 2 C 0.08 1.31 2.59 -67.71 -0.18 1.14 16 3 H 0.07 1.16 7.80 -51.93 -0.40 0.76 16 4 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 5 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 6 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 7 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 14 N -0.67 -10.13 5.69 -107.99 -0.61 -10.75 16 15 C 0.13 1.71 5.91 -4.98 -0.03 1.68 16 16 C -0.04 -0.55 6.54 -81.48 -0.53 -1.09 16 17 C 0.03 0.44 11.75 -17.94 -0.21 0.23 16 18 N -0.49 -7.22 11.32 -12.79 -0.14 -7.37 16 19 C 0.21 2.96 7.81 -156.05 -1.22 1.74 16 20 C -0.06 -0.63 10.10 -39.37 -0.40 -1.02 16 21 C -0.13 -1.38 10.05 -39.49 -0.40 -1.78 16 22 C 0.08 1.05 7.25 -39.79 -0.29 0.77 16 23 F -0.12 -1.76 17.26 2.25 0.04 -1.72 16 24 C 0.04 0.64 10.82 -16.53 -0.18 0.46 16 25 N -0.33 -4.93 2.95 -58.39 -0.17 -5.10 16 26 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.49 7.45 -51.93 -0.39 0.10 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.80 7.75 -51.93 -0.40 0.40 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.34 4.83 8.46 -39.29 -0.33 4.50 16 35 H 0.08 1.06 8.06 -51.93 -0.42 0.64 16 36 H 0.05 0.57 7.44 -51.93 -0.39 0.19 16 37 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.18 2.78 8.06 -52.49 -0.42 2.36 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -32.51 343.53 -9.44 -41.96 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.68 Total: 1.95 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -3.76 Total: -14.81 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.19 Total: -49.54 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.51 -9.44 -41.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.233 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds