Wall clock time and date at job start Tue Mar 31 2020 06:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46547 * 2 1 4 4 C 1.53002 * 109.47253 * 120.00008 * 2 1 3 5 5 C 1.53002 * 109.46959 * 185.00102 * 4 2 1 6 6 C 1.50702 * 109.46878 * 180.02562 * 5 4 2 7 7 H 1.07998 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99672 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00200 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00057 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47000 * 59.99796 * 10 8 6 12 12 H 1.48496 * 109.47724 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47208 * 300.00525 * 10 8 6 14 14 N 1.46904 * 109.47044 * 240.00497 * 2 1 3 15 15 C 1.46894 * 111.00317 * 84.99629 * 14 2 1 16 16 C 1.50701 * 109.47213 * 179.97438 * 15 14 2 17 17 C 1.35120 * 126.40629 * 94.97661 * 16 15 14 18 18 N 1.33494 * 108.61325 * 180.02562 * 17 16 15 19 19 C 1.32608 * 109.15390 * 0.02562 * 18 17 16 20 20 C 1.40916 * 132.29299 * 179.97438 * 19 18 17 21 21 C 1.36014 * 119.37371 * 180.02562 * 20 19 18 22 22 C 1.40612 * 119.68373 * 359.97438 * 21 20 19 23 23 F 1.35103 * 119.87110 * 180.02562 * 22 21 20 24 24 C 1.35129 * 120.25238 * 0.02562 * 22 21 20 25 25 N 1.36601 * 120.57057 * 359.97438 * 24 22 21 26 26 H 1.08999 * 109.47406 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47101 * 299.99574 * 1 2 3 28 28 H 1.09005 * 109.47463 * 60.00041 * 1 2 3 29 29 H 1.08995 * 109.47050 * 305.00072 * 4 2 1 30 30 H 1.09001 * 109.46977 * 65.00191 * 4 2 1 31 31 H 1.08997 * 109.46707 * 299.99868 * 5 4 2 32 32 H 1.08996 * 109.46842 * 59.99958 * 5 4 2 33 33 H 0.97000 * 119.99870 * 179.97438 * 9 8 6 34 34 H 1.00902 * 110.99858 * 321.04281 * 14 2 1 35 35 H 1.09005 * 109.46842 * 59.99945 * 15 14 2 36 36 H 1.08998 * 109.47378 * 300.00515 * 15 14 2 37 37 H 1.07998 * 125.69898 * 0.05750 * 17 16 15 38 38 H 1.08001 * 120.31393 * 0.04832 * 20 19 18 39 39 H 1.07998 * 120.15242 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.71095 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6132 1.3136 6 6 4.0672 -1.3242 2.5438 7 1 3.3689 -1.8053 3.2125 8 6 5.4185 -1.3613 2.8149 9 7 6.2690 -0.7758 2.0003 10 14 6.0413 -2.2419 4.3400 11 1 5.6478 -3.6726 4.2809 12 1 7.5213 -2.1372 4.4026 13 1 5.4497 -1.6155 5.5496 14 7 2.0196 -0.6924 -1.1995 15 6 2.0824 0.2227 -2.3469 16 6 2.5884 -0.5214 -3.5558 17 6 1.8334 -1.1006 -4.5151 18 7 2.6444 -1.6599 -5.4159 19 6 3.9037 -1.4529 -5.0554 20 6 5.1308 -1.8241 -5.6405 21 6 6.2944 -1.4661 -5.0340 22 6 6.2576 -0.7320 -3.8352 23 9 7.4112 -0.3740 -3.2299 24 6 5.0731 -0.3834 -3.2864 25 7 3.8982 -0.7375 -3.8867 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2056 31 1 3.9994 -1.0727 0.4259 32 1 3.8531 0.4370 1.3573 33 1 7.2197 -0.8016 2.1913 34 1 1.4495 -1.4979 -1.4101 35 1 2.7588 1.0463 -2.1182 36 1 1.0870 0.6164 -2.5525 37 1 0.7539 -1.1092 -4.5480 38 1 5.1471 -2.3872 -6.5619 39 1 7.2419 -1.7443 -5.4711 40 1 5.0551 0.1807 -2.3656 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:16 Heat of formation + Delta-G solvation = 14.199300 kcal Electronic energy + Delta-G solvation = -22861.735844 eV Core-core repulsion = 19398.028057 eV Total energy + Delta-G solvation = -3463.707787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 291.144 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -50.11348 -43.88401 -38.74049 -38.06100 -35.51279 -34.80933 -33.32660 -31.20890 -30.67224 -29.42628 -27.04272 -26.13594 -24.64164 -23.58716 -23.17289 -22.10721 -21.41671 -18.95655 -18.81806 -18.36487 -17.45211 -17.35583 -16.69806 -16.56047 -16.35798 -16.05670 -15.70992 -15.45962 -15.07041 -14.83147 -14.49271 -14.16914 -14.10069 -13.93213 -13.65910 -13.27150 -13.04876 -12.84358 -12.76332 -12.60677 -12.50085 -12.35266 -12.01427 -11.81003 -11.54320 -11.27782 -11.16820 -10.99315 -10.49760 -9.78162 -9.22923 -8.86717 -8.15544 -6.25515 -0.42262 0.06079 1.37794 1.38681 1.40559 1.48262 1.69423 2.36221 2.41766 2.93563 3.12955 3.16974 3.36112 3.45008 3.69888 3.77148 4.02464 4.05591 4.24595 4.35156 4.39992 4.47720 4.53540 4.59264 4.79421 4.80060 4.85636 4.97493 5.00532 5.08908 5.12330 5.30751 5.41010 5.45793 5.55767 5.57165 5.85537 5.89170 5.99528 6.19958 6.33121 6.54995 6.72995 6.93560 7.42567 8.95089 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.005108 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.531653 B = 5480.040985 C = 7361.088970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.064 0.936 4 C -0.089 4.089 5 C 0.041 3.959 6 C -0.544 4.544 7 H 0.054 0.946 8 C 0.001 3.999 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.267 1.267 14 N -0.693 5.693 15 C 0.143 3.857 16 C -0.059 4.059 17 C 0.038 3.962 18 N -0.506 5.506 19 C 0.188 3.812 20 C -0.048 4.048 21 C -0.120 4.120 22 C 0.076 3.924 23 F -0.129 7.129 24 C 0.015 3.985 25 N -0.342 5.342 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.000 1.000 32 H -0.023 1.023 33 H 0.260 0.740 34 H 0.346 0.654 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.211 0.789 38 H 0.194 0.806 39 H 0.191 0.809 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.891 1.202 -15.875 17.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.016 4.016 3 H 0.082 0.918 4 C -0.127 4.127 5 C 0.004 3.996 6 C -0.582 4.582 7 H 0.072 0.928 8 C -0.196 4.196 9 N -0.571 5.571 10 Si 0.782 3.218 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.192 1.192 14 N -0.325 5.325 15 C 0.014 3.986 16 C -0.172 4.172 17 C -0.114 4.114 18 N -0.226 5.226 19 C -0.055 4.055 20 C -0.067 4.067 21 C -0.144 4.144 22 C 0.054 3.946 23 F -0.108 7.108 24 C -0.109 4.109 25 N -0.014 5.014 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.018 0.982 32 H -0.004 1.004 33 H 0.069 0.931 34 H 0.165 0.835 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.211 0.789 39 H 0.208 0.792 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.304 0.948 -16.355 17.553 hybrid contribution 0.351 0.360 1.823 1.891 sum -5.953 1.308 -14.532 15.759 Atomic orbital electron populations 1.22387 0.94910 1.02593 1.02838 1.21513 0.93678 0.96916 0.89527 0.91764 1.21470 0.96453 0.99034 0.95782 1.18792 0.92265 0.93744 0.94780 1.21779 0.92459 1.34440 1.09544 0.92799 1.25903 0.97415 0.96466 0.99842 1.70095 1.02508 1.45533 1.38915 0.85632 0.77048 0.79261 0.79887 1.19477 1.20916 1.19152 1.60424 1.59096 1.09861 1.03136 1.20232 1.00512 0.92993 0.84907 1.21487 0.80649 1.12202 1.02880 1.22790 1.00986 0.97234 0.90408 1.70745 0.98056 1.24842 1.28994 1.21546 0.96077 1.00122 0.87713 1.20548 0.85714 0.99167 1.01299 1.21419 1.01691 0.98230 0.93036 1.16962 0.80682 1.01994 0.94985 1.91564 1.45975 1.90204 1.83010 1.21285 0.83958 1.04998 1.00653 1.42390 1.05507 1.35043 1.18441 0.92036 0.91719 0.91129 0.93063 0.93707 0.98167 1.00429 0.93102 0.83523 0.91733 0.89518 0.77217 0.78882 0.79208 0.82399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 9.16 71.98 0.66 -3.08 16 2 C 0.09 2.87 2.59 44.91 0.12 2.99 16 3 H 0.06 2.08 7.80 -2.39 -0.02 2.06 16 4 C -0.09 -3.62 4.83 30.60 0.15 -3.47 16 5 C 0.04 2.21 4.86 29.85 0.15 2.36 16 6 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 7 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 8 C 0.00 0.08 5.46 84.65 0.46 0.54 16 9 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 10 Si 0.96 45.46 29.54 68.60 2.03 47.49 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 14 N -0.69 -21.00 5.69 -495.57 -2.82 -23.82 16 15 C 0.14 3.62 5.91 85.56 0.51 4.13 16 16 C -0.06 -1.60 6.54 41.06 0.27 -1.33 16 17 C 0.04 0.94 11.75 83.72 0.98 1.93 16 18 N -0.51 -14.38 11.32 -194.37 -2.20 -16.58 16 19 C 0.19 5.23 7.81 134.10 1.05 6.28 16 20 C -0.05 -0.98 10.10 22.41 0.23 -0.75 16 21 C -0.12 -2.42 10.05 22.33 0.22 -2.19 16 22 C 0.08 2.13 7.25 22.13 0.16 2.29 16 23 F -0.13 -3.99 17.26 44.97 0.78 -3.22 16 24 C 0.02 0.48 10.82 83.23 0.90 1.38 16 25 N -0.34 -10.28 2.95 -338.66 -1.00 -11.28 16 26 H 0.06 1.31 8.13 -2.39 -0.02 1.29 16 27 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.07 1.25 7.45 -2.38 -0.02 1.23 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.00 -0.01 7.75 -2.39 -0.02 -0.02 16 32 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 34 H 0.35 9.58 8.46 -89.69 -0.76 8.82 16 35 H 0.06 1.81 8.06 -2.38 -0.02 1.79 16 36 H 0.09 1.63 7.44 -2.39 -0.02 1.61 16 37 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.19 2.54 8.06 -2.91 -0.02 2.51 16 39 H 0.19 2.35 8.06 -2.91 -0.02 2.32 16 40 H 0.16 5.51 8.06 -2.91 -0.02 5.49 16 Total: -1.00 -72.54 343.53 3.44 -69.10 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.29 Total: 16.49 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 6.08 Total: -20.54 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -5.73 Total: -109.33 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.78 Total: -3.22 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -72.54 3.44 -69.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.302 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds