Wall clock time and date at job start Tue Mar 31 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47534 * 2 1 4 4 C 1.52994 * 109.47399 * 120.00741 * 2 1 3 5 5 C 1.53000 * 109.47162 * 185.00131 * 4 2 1 6 6 C 1.50708 * 109.47029 * 179.97438 * 5 4 2 7 7 H 1.07993 * 120.00123 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99787 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00182 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99837 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47366 * 59.99379 * 10 8 6 12 12 H 1.48498 * 109.47189 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47139 * 299.99508 * 10 8 6 14 14 N 1.46906 * 109.46782 * 240.00523 * 2 1 3 15 15 C 1.46898 * 110.99936 * 85.00163 * 14 2 1 16 16 H 1.08996 * 109.55579 * 325.20199 * 15 14 2 17 17 C 1.53539 * 109.55720 * 85.51286 * 15 14 2 18 18 S 1.81616 * 107.28458 * 192.52845 * 17 15 14 19 19 C 1.76469 * 102.60908 * 313.58269 * 18 17 15 20 20 C 1.39635 * 117.71378 * 192.73419 * 19 18 17 21 21 C 1.37744 * 120.62655 * 180.73463 * 20 19 18 22 22 C 1.38343 * 119.50780 * 359.97438 * 21 20 19 23 23 C 1.37760 * 120.01011 * 359.55286 * 22 21 20 24 24 C 1.38173 * 122.30743 * 12.96707 * 19 18 17 25 25 C 1.50046 * 124.78090 * 358.94696 * 24 19 18 26 26 H 1.08999 * 109.47024 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47058 * 299.99482 * 1 2 3 28 28 H 1.08999 * 109.47173 * 59.99425 * 1 2 3 29 29 H 1.09002 * 109.47116 * 304.99774 * 4 2 1 30 30 H 1.08997 * 109.47729 * 64.99472 * 4 2 1 31 31 H 1.08998 * 109.46868 * 299.99331 * 5 4 2 32 32 H 1.09000 * 109.47547 * 59.99839 * 5 4 2 33 33 H 0.96996 * 120.00176 * 180.02562 * 9 8 6 34 34 H 1.00908 * 110.99693 * 208.94736 * 14 2 1 35 35 H 1.08993 * 109.89154 * 311.97188 * 17 15 14 36 36 H 1.09004 * 109.89182 * 73.08337 * 17 15 14 37 37 H 1.08003 * 119.68719 * 0.75370 * 20 19 18 38 38 H 1.07996 * 120.24277 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.99306 * 179.70957 * 22 21 20 40 40 H 1.08003 * 119.46805 * 180.24493 * 23 22 21 41 41 H 1.09005 * 108.65557 * 143.58501 * 25 24 19 42 42 H 1.08995 * 108.65806 * 261.59186 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3135 6 6 4.0672 -1.3234 2.5443 7 1 3.3688 -1.8033 3.2137 8 6 5.4184 -1.3594 2.8161 9 7 6.2690 -0.7746 2.0011 10 14 6.0412 -2.2401 4.3412 11 1 5.6489 -3.6711 4.2813 12 1 7.5211 -2.1352 4.4038 13 1 5.4485 -1.6146 5.5506 14 7 2.0196 -0.6924 -1.1996 15 6 2.0824 0.2228 -2.3469 16 1 1.2602 0.9361 -2.2900 17 6 3.4205 0.9754 -2.3313 18 16 3.2881 2.3363 -3.5267 19 6 2.5809 1.5438 -4.9359 20 6 2.5883 2.2417 -6.1453 21 6 2.0386 1.6861 -7.2795 22 6 1.4754 0.4241 -7.2158 23 6 1.4752 -0.2711 -6.0265 24 6 2.0279 0.2792 -4.8719 25 6 1.9779 -0.5717 -3.6371 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7716 1.2054 31 1 3.9994 -1.0728 0.4258 32 1 3.8532 0.4369 1.3573 33 1 7.2196 -0.8003 2.1921 34 1 2.9173 -1.1204 -1.0289 35 1 3.6101 1.3742 -1.3349 36 1 4.2276 0.3031 -2.6226 37 1 3.0294 3.2265 -6.1919 38 1 2.0473 2.2316 -8.2116 39 1 1.0380 -0.0171 -8.0993 40 1 1.0366 -1.2573 -5.9877 41 1 1.0378 -1.1235 -3.6317 42 1 2.8004 -1.2860 -3.6722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:22 Heat of formation + Delta-G solvation = 1.536995 kcal Electronic energy + Delta-G solvation = -20700.947643 eV Core-core repulsion = 17770.611203 eV Total energy + Delta-G solvation = -2930.336440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -39.55835 -37.91055 -34.88434 -32.95186 -31.40730 -31.03603 -29.51935 -28.03446 -26.96538 -25.11501 -22.93035 -22.44876 -21.42532 -20.39772 -19.63666 -17.66762 -16.44238 -15.93887 -15.85806 -15.68211 -14.75917 -14.62234 -14.48697 -14.23271 -13.81118 -13.32062 -13.19936 -12.94059 -12.63975 -12.55865 -12.41188 -11.91550 -11.69146 -11.59613 -11.43177 -11.36864 -11.00751 -10.95548 -10.83915 -10.55649 -10.33806 -10.19469 -9.87532 -9.76678 -9.32761 -9.09411 -8.84367 -8.40266 -8.17712 -7.36374 -6.05127 -4.07357 1.10537 1.21246 1.61498 2.39871 3.30629 3.35324 3.37741 3.55471 4.23120 4.42357 4.68353 4.71141 4.79202 4.94338 4.97032 5.16029 5.30886 5.34139 5.37878 5.45972 5.52527 5.60394 5.65459 5.71595 5.81262 5.85172 6.01219 6.06252 6.14390 6.20496 6.29524 6.31996 6.38226 6.46357 6.48266 6.78452 6.83890 7.00561 7.34560 7.54153 7.71610 7.76760 7.93420 8.37134 8.98766 9.57220 11.05934 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023759 B = 0.003463 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.224277 B = 8082.367424 C = 8550.988910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.674 5.674 15 C 0.093 3.907 16 H 0.088 0.912 17 C -0.133 4.133 18 S -0.125 6.125 19 C -0.075 4.075 20 C -0.101 4.101 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.074 4.074 25 C -0.078 4.078 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.261 0.739 34 H 0.356 0.644 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.835 3.956 -16.861 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.059 0.941 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.309 5.309 15 C -0.019 4.019 16 H 0.106 0.894 17 C -0.283 4.283 18 S 0.118 5.882 19 C -0.187 4.187 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.145 4.145 23 C -0.128 4.128 24 C -0.081 4.081 25 C -0.116 4.116 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.071 0.929 34 H 0.178 0.822 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.871 4.887 -16.725 20.027 hybrid contribution 1.009 -1.190 0.837 1.770 sum -8.862 3.697 -15.888 18.564 Atomic orbital electron populations 1.21803 0.95556 1.01786 1.00336 1.21646 0.94638 0.96269 0.90249 0.94147 1.21842 0.99690 0.99510 0.94274 1.19123 0.88715 0.96811 0.96925 1.21185 0.91946 1.34457 1.08330 0.92714 1.25015 0.97077 0.95561 0.96704 1.69936 1.02452 1.44006 1.37058 0.86660 0.77602 0.80264 0.83503 1.20214 1.21305 1.20260 1.60690 1.34677 1.31273 1.04225 1.21581 0.94564 0.93833 0.91895 0.89355 1.24775 1.02973 0.99088 1.01464 1.85512 1.77512 1.17316 1.07900 1.21473 1.02806 0.97049 0.97417 1.20891 1.00627 0.99920 0.91032 1.20991 0.98554 0.95813 0.97831 1.21028 1.00429 0.95218 0.97802 1.21236 0.99489 0.99889 0.92170 1.19717 0.98556 0.93699 0.96127 1.20237 1.04237 0.97418 0.89711 0.92306 0.92864 0.93747 0.92581 0.92371 0.96749 0.96991 0.92936 0.82181 0.86460 0.88656 0.85726 0.85705 0.85978 0.85886 0.89150 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.40 37.16 0.35 -1.58 16 2 C 0.08 1.33 2.42 -67.71 -0.16 1.17 16 3 H 0.04 0.69 7.19 -51.93 -0.37 0.32 16 4 C -0.12 -2.27 4.74 -26.73 -0.13 -2.39 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 7 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 N -0.67 -10.42 6.06 -100.05 -0.61 -11.03 16 15 C 0.09 1.29 2.17 -68.01 -0.15 1.14 16 16 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 17 C -0.13 -1.94 5.78 37.44 0.22 -1.73 16 18 S -0.13 -1.74 21.99 -107.50 -2.36 -4.11 16 19 C -0.07 -0.98 6.05 -39.08 -0.24 -1.22 16 20 C -0.10 -1.16 9.65 -39.24 -0.38 -1.54 16 21 C -0.11 -1.09 10.06 -39.72 -0.40 -1.49 16 22 C -0.12 -1.18 10.03 -39.72 -0.40 -1.58 16 23 C -0.11 -1.15 9.48 -39.35 -0.37 -1.52 16 24 C -0.07 -0.92 5.78 -104.55 -0.60 -1.53 16 25 C -0.08 -0.97 4.87 -28.77 -0.14 -1.11 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.58 7.43 -51.93 -0.39 0.20 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.36 6.11 6.22 -39.29 -0.24 5.87 16 35 H 0.12 1.89 7.44 -51.93 -0.39 1.51 16 36 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 37 H 0.12 1.28 8.05 -52.48 -0.42 0.85 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.12 1.08 8.02 -52.48 -0.42 0.66 16 41 H 0.09 1.06 8.02 -51.93 -0.42 0.64 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -28.81 346.90 -11.67 -40.48 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.69 Total: 4.72 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -2.95 Total: -26.17 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.13 Total: -36.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.36 Total: -4.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.81 -11.67 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.015 kcal (2) G-P(sol) polarization free energy of solvation -28.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds