Wall clock time and date at job start Tue Mar 31 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47534 * 2 1 4 4 C 1.52994 * 109.47399 * 120.00741 * 2 1 3 5 5 C 1.53000 * 109.47162 * 185.00131 * 4 2 1 6 6 C 1.50708 * 109.47029 * 179.97438 * 5 4 2 7 7 H 1.07993 * 120.00123 * 359.97438 * 6 5 4 8 8 C 1.37880 * 119.99787 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00182 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99837 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47366 * 59.99379 * 10 8 6 12 12 H 1.48498 * 109.47189 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47139 * 299.99508 * 10 8 6 14 14 N 1.46906 * 109.46782 * 240.00523 * 2 1 3 15 15 C 1.46898 * 110.99936 * 85.00163 * 14 2 1 16 16 H 1.08996 * 109.55579 * 325.20199 * 15 14 2 17 17 C 1.53539 * 109.55720 * 85.51286 * 15 14 2 18 18 S 1.81616 * 107.28458 * 192.52845 * 17 15 14 19 19 C 1.76469 * 102.60908 * 313.58269 * 18 17 15 20 20 C 1.39635 * 117.71378 * 192.73419 * 19 18 17 21 21 C 1.37744 * 120.62655 * 180.73463 * 20 19 18 22 22 C 1.38343 * 119.50780 * 359.97438 * 21 20 19 23 23 C 1.37760 * 120.01011 * 359.55286 * 22 21 20 24 24 C 1.38173 * 122.30743 * 12.96707 * 19 18 17 25 25 C 1.50046 * 124.78090 * 358.94696 * 24 19 18 26 26 H 1.08999 * 109.47024 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47058 * 299.99482 * 1 2 3 28 28 H 1.08999 * 109.47173 * 59.99425 * 1 2 3 29 29 H 1.09002 * 109.47116 * 304.99774 * 4 2 1 30 30 H 1.08997 * 109.47729 * 64.99472 * 4 2 1 31 31 H 1.08998 * 109.46868 * 299.99331 * 5 4 2 32 32 H 1.09000 * 109.47547 * 59.99839 * 5 4 2 33 33 H 0.96996 * 120.00176 * 180.02562 * 9 8 6 34 34 H 1.00908 * 110.99693 * 208.94736 * 14 2 1 35 35 H 1.08993 * 109.89154 * 311.97188 * 17 15 14 36 36 H 1.09004 * 109.89182 * 73.08337 * 17 15 14 37 37 H 1.08003 * 119.68719 * 0.75370 * 20 19 18 38 38 H 1.07996 * 120.24277 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.99306 * 179.70957 * 22 21 20 40 40 H 1.08003 * 119.46805 * 180.24493 * 23 22 21 41 41 H 1.09005 * 108.65557 * 143.58501 * 25 24 19 42 42 H 1.08995 * 108.65806 * 261.59186 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3135 6 6 4.0672 -1.3234 2.5443 7 1 3.3688 -1.8033 3.2137 8 6 5.4184 -1.3594 2.8161 9 7 6.2690 -0.7746 2.0011 10 14 6.0412 -2.2401 4.3412 11 1 5.6489 -3.6711 4.2813 12 1 7.5211 -2.1352 4.4038 13 1 5.4485 -1.6146 5.5506 14 7 2.0196 -0.6924 -1.1996 15 6 2.0824 0.2228 -2.3469 16 1 1.2602 0.9361 -2.2900 17 6 3.4205 0.9754 -2.3313 18 16 3.2881 2.3363 -3.5267 19 6 2.5809 1.5438 -4.9359 20 6 2.5883 2.2417 -6.1453 21 6 2.0386 1.6861 -7.2795 22 6 1.4754 0.4241 -7.2158 23 6 1.4752 -0.2711 -6.0265 24 6 2.0279 0.2792 -4.8719 25 6 1.9779 -0.5717 -3.6371 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.6055 -0.2619 2.1369 30 1 1.7517 -1.7716 1.2054 31 1 3.9994 -1.0728 0.4258 32 1 3.8532 0.4369 1.3573 33 1 7.2196 -0.8003 2.1921 34 1 2.9173 -1.1204 -1.0289 35 1 3.6101 1.3742 -1.3349 36 1 4.2276 0.3031 -2.6226 37 1 3.0294 3.2265 -6.1919 38 1 2.0473 2.2316 -8.2116 39 1 1.0380 -0.0171 -8.0993 40 1 1.0366 -1.2573 -5.9877 41 1 1.0378 -1.1235 -3.6317 42 1 2.8004 -1.2860 -3.6722 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:21 Heat of formation + Delta-G solvation = -12.823423 kcal Electronic energy + Delta-G solvation = -20701.570358 eV Core-core repulsion = 17770.611203 eV Total energy + Delta-G solvation = -2930.959155 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47910 -39.12963 -36.27788 -34.81617 -32.60207 -31.89763 -31.16577 -29.23855 -27.98257 -26.99062 -23.88444 -23.55877 -22.98302 -21.47482 -21.09676 -18.68293 -18.44185 -17.06130 -16.87703 -16.76118 -16.54050 -15.90419 -15.73238 -15.20279 -14.93889 -14.50085 -14.43996 -14.36799 -14.13270 -13.76162 -13.62622 -13.26171 -13.15658 -12.83438 -12.83164 -12.68446 -12.40435 -12.30535 -12.14772 -12.09057 -11.74661 -11.61438 -11.35884 -11.23268 -10.96443 -10.71553 -10.54778 -9.68506 -9.45387 -8.43510 -8.21036 -6.31206 0.23829 0.38641 0.54652 1.32122 1.39058 1.41097 1.49001 2.39855 2.73021 3.04834 3.13013 3.53762 3.68682 3.87250 3.96544 4.07401 4.14935 4.19035 4.29241 4.38647 4.43806 4.50035 4.53815 4.66970 4.72015 4.77946 4.87162 4.96834 5.00264 5.04863 5.06353 5.13050 5.20299 5.37058 5.42819 5.49929 5.52583 5.57299 5.68741 5.83232 6.00386 6.10311 6.24748 6.33557 6.84951 7.37910 8.89706 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023759 B = 0.003463 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.224277 B = 8082.367424 C = 8550.988910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.086 3.914 3 H 0.029 0.971 4 C -0.102 4.102 5 C 0.029 3.971 6 C -0.543 4.543 7 H 0.058 0.942 8 C 0.003 3.997 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.269 1.269 14 N -0.670 5.670 15 C 0.102 3.898 16 H 0.087 0.913 17 C -0.128 4.128 18 S -0.143 6.143 19 C -0.096 4.096 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.090 4.090 25 C -0.071 4.071 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.001 0.999 32 H -0.017 1.017 33 H 0.262 0.738 34 H 0.344 0.656 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.142 0.858 41 H 0.101 0.899 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.413 3.168 -18.220 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.140 4.140 5 C -0.008 4.008 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.192 1.192 12 H -0.210 1.210 13 H -0.194 1.194 14 N -0.303 5.303 15 C -0.010 4.010 16 H 0.105 0.895 17 C -0.278 4.278 18 S 0.099 5.901 19 C -0.208 4.208 20 C -0.137 4.137 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.097 4.097 25 C -0.108 4.108 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.019 0.981 32 H 0.001 0.999 33 H 0.071 0.929 34 H 0.164 0.836 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.148 0.852 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.160 0.840 41 H 0.120 0.880 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.477 4.099 -18.094 21.815 hybrid contribution 1.497 -0.911 1.146 2.094 sum -9.980 3.188 -16.948 19.924 Atomic orbital electron populations 1.21721 0.93032 1.02385 1.01477 1.21562 0.96468 0.95088 0.89194 0.95311 1.21650 0.96183 0.99992 0.96153 1.18989 0.92028 0.94379 0.95425 1.21662 0.92474 1.34624 1.09361 0.92395 1.25912 0.97400 0.96324 0.99907 1.70070 1.02702 1.45296 1.38937 0.85578 0.76966 0.79348 0.79635 1.19177 1.20998 1.19378 1.60783 1.33737 1.31422 1.04323 1.21553 0.93774 0.93583 0.92091 0.89474 1.24605 1.03289 0.99322 1.00590 1.85459 1.78383 1.17367 1.08858 1.21561 1.04223 0.97853 0.97190 1.21107 1.01123 1.00340 0.91104 1.21383 0.97116 0.96039 0.98206 1.21453 0.99145 0.94869 0.98385 1.21508 0.99060 1.00835 0.91881 1.19791 0.99490 0.93632 0.96750 1.20151 1.04566 0.97129 0.88985 0.91914 0.91880 0.92492 0.92441 0.92327 0.98110 0.99865 0.92905 0.83568 0.88789 0.89653 0.85184 0.82711 0.82807 0.83974 0.88041 0.90669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.40 71.98 0.68 -2.76 16 2 C 0.09 2.85 2.42 44.91 0.11 2.96 16 3 H 0.03 1.02 7.19 -2.39 -0.02 1.00 16 4 C -0.10 -4.06 4.74 30.59 0.15 -3.92 16 5 C 0.03 1.47 4.80 29.85 0.14 1.61 16 6 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 7 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 8 C 0.00 0.15 5.46 84.65 0.46 0.61 16 9 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 10 Si 0.96 44.18 29.54 68.60 2.03 46.21 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 N -0.67 -21.07 6.06 -470.45 -2.85 -23.92 16 15 C 0.10 2.86 2.17 44.73 0.10 2.96 16 16 H 0.09 2.49 7.01 -2.39 -0.02 2.47 16 17 C -0.13 -3.99 5.78 72.16 0.42 -3.57 16 18 S -0.14 -4.14 21.99 -56.49 -1.24 -5.38 16 19 C -0.10 -2.47 6.05 22.59 0.14 -2.34 16 20 C -0.11 -2.45 9.65 22.49 0.22 -2.23 16 21 C -0.11 -1.77 10.06 22.18 0.22 -1.54 16 22 C -0.12 -1.84 10.03 22.18 0.22 -1.61 16 23 C -0.11 -2.12 9.48 22.42 0.21 -1.91 16 24 C -0.09 -2.15 5.78 -19.82 -0.11 -2.26 16 25 C -0.07 -1.72 4.87 29.27 0.14 -1.58 16 26 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.39 7.43 -2.39 -0.02 1.37 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.00 0.04 6.43 -2.39 -0.02 0.02 16 32 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 33 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 34 H 0.34 12.34 6.22 -89.69 -0.56 11.79 16 35 H 0.09 3.33 7.44 -2.39 -0.02 3.31 16 36 H 0.08 2.76 8.08 -2.38 -0.02 2.74 16 37 H 0.13 2.55 8.05 -2.91 -0.02 2.53 16 38 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.14 2.06 8.02 -2.91 -0.02 2.04 16 41 H 0.10 2.22 8.02 -2.38 -0.02 2.20 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.80 346.90 1.98 -60.82 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.44 Total: 23.86 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 3.32 Total: -45.90 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -2.56 Total: -79.62 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -1.24 Total: -5.38 kcal Total: -62.80 1.98 -60.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.997 kcal (2) G-P(sol) polarization free energy of solvation -62.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds