Wall clock time and date at job start Tue Mar 31 2020 06:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46802 * 2 1 4 4 C 1.52993 * 109.47363 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.47246 * 185.00152 * 4 2 1 6 6 C 1.50700 * 109.47085 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00190 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99682 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46951 * 90.00140 * 10 8 6 12 12 H 1.48503 * 109.47358 * 209.99950 * 10 8 6 13 13 H 1.48504 * 109.47198 * 329.99969 * 10 8 6 14 14 N 1.46906 * 109.47114 * 240.00482 * 2 1 3 15 15 C 1.46903 * 110.99874 * 86.05095 * 14 2 1 16 16 H 1.09003 * 109.63565 * 327.05805 * 15 14 2 17 17 C 1.53531 * 109.54961 * 206.80918 * 15 14 2 18 18 S 1.81608 * 107.38226 * 167.61679 * 17 15 14 19 19 C 1.76459 * 102.63207 * 46.36739 * 18 17 15 20 20 C 1.39632 * 117.72349 * 166.65652 * 19 18 17 21 21 C 1.37735 * 120.61951 * 179.47722 * 20 19 18 22 22 C 1.38342 * 119.51918 * 359.88200 * 21 20 19 23 23 C 1.37760 * 120.00960 * 0.32415 * 22 21 20 24 24 C 1.38175 * 122.30422 * 346.61084 * 19 18 17 25 25 C 1.50048 * 124.74660 * 1.90324 * 24 19 18 26 26 H 1.08994 * 109.47197 * 64.56725 * 1 2 3 27 27 H 1.08993 * 109.46799 * 184.57152 * 1 2 3 28 28 H 1.08995 * 109.46987 * 304.56944 * 1 2 3 29 29 H 1.09002 * 109.47441 * 304.99726 * 4 2 1 30 30 H 1.09000 * 109.47432 * 65.00422 * 4 2 1 31 31 H 1.09000 * 109.46848 * 299.99665 * 5 4 2 32 32 H 1.08997 * 109.47412 * 59.99838 * 5 4 2 33 33 H 0.97001 * 120.00072 * 180.02562 * 9 8 6 34 34 H 1.00892 * 110.99721 * 210.00371 * 14 2 1 35 35 H 1.08998 * 109.88448 * 48.12520 * 17 15 14 36 36 H 1.09003 * 109.88271 * 287.10945 * 17 15 14 37 37 H 1.07996 * 119.69073 * 359.49905 * 20 19 18 38 38 H 1.08007 * 120.23786 * 179.90305 * 21 20 19 39 39 H 1.08002 * 119.99371 * 180.31037 * 22 21 20 40 40 H 1.07998 * 119.47983 * 180.02562 * 23 22 21 41 41 H 1.08997 * 108.67067 * 97.79310 * 25 24 19 42 42 H 1.09006 * 108.66724 * 215.82365 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5649 -0.6132 1.3136 6 6 4.0673 -1.3242 2.5437 7 1 3.3690 -1.8046 3.2128 8 6 5.4187 -1.3613 2.8148 9 7 6.2692 -0.7767 1.9997 10 14 6.0414 -2.2419 4.3399 11 1 6.3208 -3.6630 4.0115 12 1 7.2881 -1.5892 4.8142 13 1 5.0104 -2.1738 5.4066 14 7 2.0197 -0.6924 -1.1995 15 6 2.1061 0.2287 -2.3407 16 1 1.3144 0.9746 -2.2701 17 6 1.9545 -0.5593 -3.6496 18 16 1.6979 0.6472 -4.9825 19 6 2.9453 1.8522 -4.6577 20 6 3.2221 2.7865 -5.6579 21 6 4.1768 3.7601 -5.4636 22 6 4.8640 3.8112 -4.2641 23 6 4.5964 2.8884 -3.2768 24 6 3.6390 1.8935 -3.4635 25 6 3.4573 0.9216 -2.3348 26 1 -0.3633 0.4413 -0.9280 27 1 -0.3633 -1.0244 0.0819 28 1 -0.3633 0.5831 0.8462 29 1 1.6055 -0.2618 2.1369 30 1 1.7518 -1.7715 1.2055 31 1 3.9995 -1.0728 0.4259 32 1 3.8533 0.4370 1.3573 33 1 7.2199 -0.8031 2.1903 34 1 2.9093 -1.1348 -1.0238 35 1 1.0953 -1.2267 -3.5831 36 1 2.8587 -1.1371 -3.8413 37 1 2.6823 2.7454 -6.5924 38 1 4.3870 4.4787 -6.2421 39 1 5.6106 4.5745 -4.1017 40 1 5.1377 2.9365 -2.3436 41 1 4.2374 0.1630 -2.3985 42 1 3.5686 1.4571 -1.3919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:28 Heat of formation + Delta-G solvation = 1.372121 kcal Electronic energy + Delta-G solvation = -20867.077783 eV Core-core repulsion = 17936.734193 eV Total energy + Delta-G solvation = -2930.343590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -39.54513 -37.86299 -34.83187 -32.92644 -31.36884 -30.98035 -29.52168 -28.30698 -26.72894 -25.11518 -22.84099 -22.31290 -21.46759 -20.42909 -19.70508 -17.62571 -16.44759 -15.92429 -15.82165 -15.67655 -14.71332 -14.49857 -14.47513 -14.25953 -13.71193 -13.34571 -13.22093 -12.93139 -12.60990 -12.53471 -12.41195 -11.84195 -11.66632 -11.64284 -11.40120 -11.35318 -11.02908 -10.95111 -10.85398 -10.56138 -10.44176 -10.08275 -9.84478 -9.69615 -9.34103 -9.08990 -8.78202 -8.41481 -8.16593 -7.41147 -6.06350 -4.08309 1.15639 1.28243 1.60312 2.34487 3.28393 3.35029 3.38284 3.62154 4.41303 4.42131 4.63395 4.70814 4.84545 4.89014 5.12059 5.21440 5.29966 5.36750 5.40193 5.47613 5.56349 5.60972 5.68869 5.72403 5.83987 5.90704 5.96989 6.10637 6.16098 6.23958 6.30717 6.38995 6.45736 6.46899 6.50368 6.83606 6.85700 7.00550 7.35658 7.54111 7.71484 7.77613 7.92722 8.36468 8.98130 9.56407 11.04789 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.004023 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.908164 B = 6959.018440 C = 8046.525858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.040 0.960 4 C -0.116 4.116 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.676 5.676 15 C 0.091 3.909 16 H 0.088 0.912 17 C -0.088 4.088 18 S -0.133 6.133 19 C -0.077 4.077 20 C -0.102 4.102 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.068 4.068 25 C -0.121 4.121 26 H 0.045 0.955 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.014 0.986 32 H 0.012 0.988 33 H 0.260 0.740 34 H 0.355 0.645 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 6.751 -14.444 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.058 0.942 4 C -0.154 4.154 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 N -0.310 5.310 15 C -0.021 4.021 16 H 0.106 0.894 17 C -0.237 4.237 18 S 0.110 5.890 19 C -0.190 4.190 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.127 4.127 24 C -0.075 4.075 25 C -0.159 4.159 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.177 0.823 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.104 0.896 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.302 6.362 -15.483 18.685 hybrid contribution 2.364 0.175 2.060 3.140 sum -5.938 6.537 -13.423 16.068 Atomic orbital electron populations 1.21806 0.95563 1.01770 1.00365 1.21644 0.94619 0.96222 0.90226 0.94208 1.21851 0.99694 0.99495 0.94318 1.19124 0.88721 0.96806 0.96920 1.21229 0.91956 1.34265 1.08369 0.92664 1.25006 0.97072 0.95546 0.96694 1.69947 1.02372 1.44078 1.37111 0.86611 0.78324 0.79793 0.83388 1.20632 1.21253 1.19868 1.60753 1.35341 1.30365 1.04493 1.21544 0.96334 0.93508 0.90699 0.89420 1.23865 1.07016 0.98529 0.94258 1.85351 1.41517 1.22068 1.40106 1.21364 1.00815 1.00385 0.96388 1.20855 0.98671 0.95149 0.97880 1.20991 0.96392 0.98325 0.97573 1.21067 1.00098 0.99174 0.93799 1.21362 0.97172 0.94439 0.99681 1.19660 0.96905 0.97250 0.93651 1.21104 0.99419 0.98245 0.97140 0.93567 0.92353 0.92995 0.92604 0.92374 0.96750 0.96989 0.93024 0.82291 0.86261 0.89198 0.85782 0.85696 0.85867 0.85597 0.89647 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.43 37.16 0.35 -1.59 16 2 C 0.08 1.35 2.44 -67.71 -0.17 1.19 16 3 H 0.04 0.68 7.23 -51.92 -0.38 0.31 16 4 C -0.12 -2.27 4.74 -26.73 -0.13 -2.40 16 5 C 0.02 0.52 4.81 -27.88 -0.13 0.39 16 6 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 7 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.12 13.29 55.43 0.74 -25.39 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 14 N -0.68 -10.45 6.08 -100.06 -0.61 -11.06 16 15 C 0.09 1.26 2.16 -68.02 -0.15 1.12 16 16 H 0.09 1.26 7.09 -51.93 -0.37 0.89 16 17 C -0.09 -1.10 6.14 37.43 0.23 -0.87 16 18 S -0.13 -1.67 22.00 -107.50 -2.36 -4.03 16 19 C -0.08 -1.03 6.05 -39.08 -0.24 -1.27 16 20 C -0.10 -1.21 9.65 -39.25 -0.38 -1.59 16 21 C -0.11 -1.20 10.06 -39.73 -0.40 -1.60 16 22 C -0.12 -1.37 10.03 -39.72 -0.40 -1.76 16 23 C -0.11 -1.40 9.48 -39.35 -0.37 -1.77 16 24 C -0.07 -0.95 5.77 -104.56 -0.60 -1.55 16 25 C -0.12 -1.75 4.55 -28.78 -0.13 -1.88 16 26 H 0.05 0.61 7.50 -51.93 -0.39 0.22 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.35 6.11 6.14 -39.30 -0.24 5.87 16 35 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 37 H 0.12 1.26 8.05 -52.49 -0.42 0.83 16 38 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.60 8.01 -52.49 -0.42 1.18 16 41 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 42 H 0.09 1.40 7.39 -51.93 -0.38 1.01 16 LS Contribution 347.11 15.07 5.23 5.23 Total: -1.00 -28.60 347.11 -11.65 -40.25 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.70 Total: 5.38 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -2.93 Total: -26.70 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.13 Total: -36.45 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.36 Total: -4.03 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.60 -11.65 -40.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.619 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds