Wall clock time and date at job start Tue Mar 31 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46802 * 2 1 4 4 C 1.52993 * 109.47363 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.47246 * 185.00152 * 4 2 1 6 6 C 1.50700 * 109.47085 * 180.02562 * 5 4 2 7 7 H 1.07991 * 120.00190 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99682 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99888 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46951 * 90.00140 * 10 8 6 12 12 H 1.48503 * 109.47358 * 209.99950 * 10 8 6 13 13 H 1.48504 * 109.47198 * 329.99969 * 10 8 6 14 14 N 1.46906 * 109.47114 * 240.00482 * 2 1 3 15 15 C 1.46903 * 110.99874 * 86.05095 * 14 2 1 16 16 H 1.09003 * 109.63565 * 327.05805 * 15 14 2 17 17 C 1.53531 * 109.54961 * 206.80918 * 15 14 2 18 18 S 1.81608 * 107.38226 * 167.61679 * 17 15 14 19 19 C 1.76459 * 102.63207 * 46.36739 * 18 17 15 20 20 C 1.39632 * 117.72349 * 166.65652 * 19 18 17 21 21 C 1.37735 * 120.61951 * 179.47722 * 20 19 18 22 22 C 1.38342 * 119.51918 * 359.88200 * 21 20 19 23 23 C 1.37760 * 120.00960 * 0.32415 * 22 21 20 24 24 C 1.38175 * 122.30422 * 346.61084 * 19 18 17 25 25 C 1.50048 * 124.74660 * 1.90324 * 24 19 18 26 26 H 1.08994 * 109.47197 * 64.56725 * 1 2 3 27 27 H 1.08993 * 109.46799 * 184.57152 * 1 2 3 28 28 H 1.08995 * 109.46987 * 304.56944 * 1 2 3 29 29 H 1.09002 * 109.47441 * 304.99726 * 4 2 1 30 30 H 1.09000 * 109.47432 * 65.00422 * 4 2 1 31 31 H 1.09000 * 109.46848 * 299.99665 * 5 4 2 32 32 H 1.08997 * 109.47412 * 59.99838 * 5 4 2 33 33 H 0.97001 * 120.00072 * 180.02562 * 9 8 6 34 34 H 1.00892 * 110.99721 * 210.00371 * 14 2 1 35 35 H 1.08998 * 109.88448 * 48.12520 * 17 15 14 36 36 H 1.09003 * 109.88271 * 287.10945 * 17 15 14 37 37 H 1.07996 * 119.69073 * 359.49905 * 20 19 18 38 38 H 1.08007 * 120.23786 * 179.90305 * 21 20 19 39 39 H 1.08002 * 119.99371 * 180.31037 * 22 21 20 40 40 H 1.07998 * 119.47983 * 180.02562 * 23 22 21 41 41 H 1.08997 * 108.67067 * 97.79310 * 25 24 19 42 42 H 1.09006 * 108.66724 * 215.82365 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5649 -0.6132 1.3136 6 6 4.0673 -1.3242 2.5437 7 1 3.3690 -1.8046 3.2128 8 6 5.4187 -1.3613 2.8148 9 7 6.2692 -0.7767 1.9997 10 14 6.0414 -2.2419 4.3399 11 1 6.3208 -3.6630 4.0115 12 1 7.2881 -1.5892 4.8142 13 1 5.0104 -2.1738 5.4066 14 7 2.0197 -0.6924 -1.1995 15 6 2.1061 0.2287 -2.3407 16 1 1.3144 0.9746 -2.2701 17 6 1.9545 -0.5593 -3.6496 18 16 1.6979 0.6472 -4.9825 19 6 2.9453 1.8522 -4.6577 20 6 3.2221 2.7865 -5.6579 21 6 4.1768 3.7601 -5.4636 22 6 4.8640 3.8112 -4.2641 23 6 4.5964 2.8884 -3.2768 24 6 3.6390 1.8935 -3.4635 25 6 3.4573 0.9216 -2.3348 26 1 -0.3633 0.4413 -0.9280 27 1 -0.3633 -1.0244 0.0819 28 1 -0.3633 0.5831 0.8462 29 1 1.6055 -0.2618 2.1369 30 1 1.7518 -1.7715 1.2055 31 1 3.9995 -1.0728 0.4259 32 1 3.8533 0.4370 1.3573 33 1 7.2199 -0.8031 2.1903 34 1 2.9093 -1.1348 -1.0238 35 1 1.0953 -1.2267 -3.5831 36 1 2.8587 -1.1371 -3.8413 37 1 2.6823 2.7454 -6.5924 38 1 4.3870 4.4787 -6.2421 39 1 5.6106 4.5745 -4.1017 40 1 5.1377 2.9365 -2.3436 41 1 4.2374 0.1630 -2.3985 42 1 3.5686 1.4571 -1.3919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:25 Heat of formation + Delta-G solvation = -12.691716 kcal Electronic energy + Delta-G solvation = -20867.687637 eV Core-core repulsion = 17936.734193 eV Total energy + Delta-G solvation = -2930.953444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.57600 -39.09528 -36.27534 -34.80379 -32.59784 -31.95284 -31.16916 -29.46587 -27.81150 -27.00838 -23.80964 -23.57991 -22.99405 -21.57733 -21.19348 -18.66362 -18.44615 -17.04225 -16.92901 -16.79858 -16.55066 -15.81653 -15.72980 -15.31726 -14.82513 -14.56582 -14.45812 -14.31737 -14.18513 -13.84628 -13.63526 -13.21693 -13.16266 -12.85992 -12.83235 -12.75462 -12.40240 -12.34381 -12.17748 -12.03888 -11.91503 -11.62148 -11.32467 -11.14355 -10.96745 -10.68187 -10.55574 -9.76848 -9.46409 -8.39775 -8.21583 -6.31575 0.19274 0.32315 0.61198 1.32055 1.38994 1.39181 1.50246 2.39536 2.67062 3.11552 3.19220 3.53362 3.59582 3.79327 3.96997 4.07624 4.13331 4.18523 4.30334 4.38353 4.41790 4.45965 4.50865 4.61003 4.70135 4.76222 4.83006 4.91632 4.99658 5.01154 5.03293 5.09021 5.20161 5.29791 5.42924 5.44643 5.52416 5.53028 5.68284 5.82974 5.94095 6.10825 6.24579 6.33868 6.84673 7.37691 8.89441 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.004023 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.908164 B = 6959.018440 C = 8046.525858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.088 3.912 3 H 0.028 0.972 4 C -0.103 4.103 5 C 0.029 3.971 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.265 1.265 14 N -0.672 5.672 15 C 0.099 3.901 16 H 0.087 0.913 17 C -0.084 4.084 18 S -0.119 6.119 19 C -0.095 4.095 20 C -0.108 4.108 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.127 4.127 24 C -0.089 4.089 25 C -0.111 4.111 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.000 1.000 32 H -0.017 1.017 33 H 0.262 0.738 34 H 0.342 0.658 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.148 0.852 40 H 0.117 0.883 41 H 0.068 0.932 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.824 7.078 -15.340 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.022 4.022 3 H 0.046 0.954 4 C -0.140 4.140 5 C -0.008 4.008 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.198 1.198 12 H -0.209 1.209 13 H -0.189 1.189 14 N -0.304 5.304 15 C -0.013 4.013 16 H 0.105 0.895 17 C -0.233 4.233 18 S 0.123 5.877 19 C -0.207 4.207 20 C -0.130 4.130 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.147 4.147 24 C -0.095 4.095 25 C -0.150 4.150 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.018 0.982 32 H 0.002 0.998 33 H 0.071 0.929 34 H 0.163 0.837 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.165 0.835 40 H 0.135 0.865 41 H 0.086 0.914 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.183 6.693 -16.383 19.938 hybrid contribution 2.674 0.145 2.286 3.521 sum -6.509 6.839 -14.097 16.966 Atomic orbital electron populations 1.21726 0.93034 1.02356 1.01533 1.21560 0.96446 0.95032 0.89157 0.95370 1.21663 0.96226 0.99966 0.96192 1.18984 0.91994 0.94393 0.95402 1.21688 0.92489 1.34495 1.09391 0.92442 1.25888 0.97369 0.96276 0.99856 1.70075 1.02676 1.45307 1.38957 0.85536 0.77795 0.78671 0.79601 1.19824 1.20890 1.18892 1.60851 1.34413 1.30532 1.04590 1.21504 0.95698 0.93311 0.90806 0.89472 1.23793 1.07444 0.98605 0.93472 1.85229 1.41255 1.21624 1.39557 1.21574 1.01222 1.01321 0.96590 1.21188 0.98969 0.94801 0.98085 1.21410 0.95007 0.98145 0.97865 1.21391 1.00316 0.98849 0.93467 1.21470 0.97540 0.95351 1.00296 1.19621 0.98231 0.97763 0.93930 1.20945 0.99399 0.97895 0.96721 0.92321 0.92001 0.91943 0.92460 0.92355 0.98180 0.99823 0.92908 0.83699 0.85137 0.89416 0.83903 0.82204 0.83461 0.86467 0.91370 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.43 71.98 0.68 -2.77 16 2 C 0.09 2.91 2.44 44.91 0.11 3.02 16 3 H 0.03 1.00 7.23 -2.38 -0.02 0.98 16 4 C -0.10 -4.10 4.74 30.59 0.14 -3.95 16 5 C 0.03 1.49 4.81 29.85 0.14 1.64 16 6 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 7 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 8 C 0.00 0.23 5.46 84.65 0.46 0.70 16 9 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 10 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 14 N -0.67 -21.22 6.08 -470.47 -2.86 -24.07 16 15 C 0.10 2.79 2.16 44.71 0.10 2.88 16 16 H 0.09 2.49 7.09 -2.39 -0.02 2.48 16 17 C -0.08 -2.07 6.14 72.16 0.44 -1.63 16 18 S -0.12 -2.86 22.00 -56.49 -1.24 -4.10 16 19 C -0.09 -2.47 6.05 22.59 0.14 -2.33 16 20 C -0.11 -2.31 9.65 22.49 0.22 -2.10 16 21 C -0.10 -1.95 10.06 22.18 0.22 -1.72 16 22 C -0.12 -2.54 10.03 22.18 0.22 -2.31 16 23 C -0.13 -3.41 9.48 22.42 0.21 -3.19 16 24 C -0.09 -2.55 5.77 -19.82 -0.11 -2.67 16 25 C -0.11 -3.44 4.55 29.26 0.13 -3.31 16 26 H 0.06 1.44 7.50 -2.39 -0.02 1.42 16 27 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.00 0.00 6.43 -2.39 -0.02 -0.02 16 32 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 33 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.34 12.38 6.14 -89.70 -0.55 11.83 16 35 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 36 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 37 H 0.14 2.49 8.05 -2.91 -0.02 2.46 16 38 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 39 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.12 3.22 8.01 -2.91 -0.02 3.20 16 41 H 0.07 2.29 8.08 -2.39 -0.02 2.27 16 42 H 0.06 2.27 7.39 -2.38 -0.02 2.25 16 Total: -1.00 -61.94 347.11 1.99 -59.95 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.44 Total: 25.53 kcal Atomic # 6 Polarization: -51.32 SS G_CDS: 3.34 Total: -47.97 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.57 Total: -79.42 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -2.86 SS G_CDS: -1.24 Total: -4.10 kcal Total: -61.94 1.99 -59.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.258 kcal (2) G-P(sol) polarization free energy of solvation -61.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds