Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47053 * 2 1 4 4 C 1.52998 * 109.47153 * 240.00380 * 2 1 3 5 5 C 1.53004 * 109.47273 * 175.00092 * 4 2 1 6 6 C 1.50696 * 109.46995 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00383 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99454 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00422 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99534 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47243 * 60.00066 * 10 8 6 12 12 H 1.48502 * 109.46739 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46845 * 299.99577 * 10 8 6 14 14 N 1.46902 * 109.47164 * 119.99735 * 2 1 3 15 15 C 1.46896 * 111.00049 * 275.00292 * 14 2 1 16 16 H 1.09002 * 109.55657 * 35.00109 * 15 14 2 17 17 C 1.53524 * 109.63746 * 274.74011 * 15 14 2 18 18 S 1.81612 * 107.31791 * 167.52341 * 17 15 14 19 19 C 1.76460 * 102.63504 * 46.41007 * 18 17 15 20 20 C 1.39624 * 117.72514 * 167.37478 * 19 18 17 21 21 C 1.37742 * 120.62267 * 178.56533 * 20 19 18 22 22 C 1.38337 * 119.51354 * 0.05363 * 21 20 19 23 23 C 1.37770 * 120.01363 * 0.34147 * 22 21 20 24 24 C 1.38179 * 122.29224 * 346.62719 * 19 18 17 25 25 C 1.50044 * 124.75641 * 1.86321 * 24 19 18 26 26 H 1.08994 * 109.47309 * 299.99988 * 1 2 3 27 27 H 1.08995 * 109.47121 * 60.00178 * 1 2 3 28 28 H 1.09003 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46903 * 294.99688 * 4 2 1 30 30 H 1.09000 * 109.47591 * 54.99238 * 4 2 1 31 31 H 1.08996 * 109.46497 * 299.99845 * 5 4 2 32 32 H 1.09004 * 109.46879 * 59.99447 * 5 4 2 33 33 H 0.97001 * 120.00307 * 180.02562 * 9 8 6 34 34 H 1.00905 * 110.99516 * 151.04636 * 14 2 1 35 35 H 1.08999 * 109.88849 * 286.97343 * 17 15 14 36 36 H 1.09006 * 109.88636 * 48.07244 * 17 15 14 37 37 H 1.07993 * 119.68780 * 358.54325 * 20 19 18 38 38 H 1.08005 * 120.24275 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.99547 * 180.35820 * 22 21 20 40 40 H 1.07997 * 119.47451 * 179.97438 * 23 22 21 41 41 H 1.09000 * 108.66633 * 215.72341 * 25 24 19 42 42 H 1.08996 * 108.56031 * 97.75583 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3241 -2.5439 7 1 3.3689 -1.8051 -3.2126 8 6 5.4186 -1.3612 -2.8150 9 7 6.2691 -0.7759 -2.0004 10 14 6.0413 -2.2430 -4.3396 11 1 5.4497 -1.6176 -5.5495 12 1 7.5214 -2.1392 -4.4015 13 1 5.6481 -3.6738 -4.2791 14 7 2.0197 -0.6924 1.1995 15 6 2.0825 0.2226 2.3469 16 1 1.2581 0.9336 2.2920 17 6 3.4172 0.9810 2.3296 18 16 3.2826 2.3396 3.5273 19 6 2.5819 1.5431 4.9374 20 6 2.5876 2.2405 6.1470 21 6 2.0299 1.6873 7.2784 22 6 1.4607 0.4282 7.2119 23 6 1.4606 -0.2660 6.0219 24 6 2.0260 0.2798 4.8713 25 6 1.9831 -0.5724 3.6371 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9995 -1.0727 -0.4259 33 1 7.2197 -0.8017 -2.1914 34 1 2.9174 -1.1204 1.0287 35 1 4.2277 0.3117 2.6179 36 1 3.6029 1.3821 1.3332 37 1 3.0338 3.2227 6.1960 38 1 2.0373 2.2323 8.2108 39 1 1.0160 -0.0106 8.0929 40 1 1.0142 -1.2485 5.9799 41 1 1.0472 -1.1312 3.6314 42 1 2.8110 -1.2803 3.6754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = 1.478963 kcal Electronic energy + Delta-G solvation = -20700.911530 eV Core-core repulsion = 17770.572573 eV Total energy + Delta-G solvation = -2930.338957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.55870 -37.90947 -34.88415 -32.95281 -31.40693 -31.03683 -29.51911 -28.03818 -26.96330 -25.11511 -22.92899 -22.44931 -21.42450 -20.40046 -19.63576 -17.66981 -16.44213 -15.93778 -15.85619 -15.68275 -14.76042 -14.62149 -14.48676 -14.23073 -13.81655 -13.32173 -13.19982 -12.93947 -12.63872 -12.55820 -12.41223 -11.91438 -11.69106 -11.59630 -11.43313 -11.36913 -11.00773 -10.95225 -10.83929 -10.55659 -10.33798 -10.19422 -9.87510 -9.76598 -9.32734 -9.09440 -8.84466 -8.40317 -8.17820 -7.36398 -6.05121 -4.07361 1.10540 1.21247 1.61336 2.39914 3.30647 3.35311 3.37731 3.55474 4.23243 4.42336 4.68568 4.70955 4.79184 4.94348 4.97055 5.15988 5.30903 5.34139 5.37861 5.45970 5.52538 5.60392 5.65362 5.71580 5.81276 5.85160 6.01310 6.06183 6.14380 6.20453 6.29550 6.31998 6.38264 6.46363 6.48264 6.78436 6.83872 7.00559 7.34588 7.54157 7.71599 7.76808 7.93407 8.37178 8.98769 9.57235 11.05924 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.003463 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.304743 B = 8084.074653 C = 8552.253155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.081 3.919 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.674 5.674 15 C 0.093 3.907 16 H 0.088 0.912 17 C -0.133 4.133 18 S -0.125 6.125 19 C -0.075 4.075 20 C -0.101 4.101 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.074 4.074 25 C -0.078 4.078 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.012 0.988 32 H 0.014 0.986 33 H 0.261 0.739 34 H 0.356 0.644 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 3.967 16.855 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 H 0.059 0.941 4 C -0.153 4.153 5 C -0.016 4.016 6 C -0.559 4.559 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.308 5.308 15 C -0.019 4.019 16 H 0.106 0.894 17 C -0.283 4.283 18 S 0.118 5.882 19 C -0.188 4.188 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.145 4.145 23 C -0.128 4.128 24 C -0.081 4.081 25 C -0.116 4.116 26 H 0.063 0.937 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.178 0.822 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.109 0.891 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.890 4.899 16.721 20.035 hybrid contribution 1.017 -1.193 -0.836 1.777 sum -8.873 3.706 15.885 18.568 Atomic orbital electron populations 1.21803 0.95556 1.01786 1.00335 1.21647 0.94638 0.96269 0.90252 0.94150 1.21846 0.99692 0.99511 0.94271 1.19122 0.88713 0.96805 0.96928 1.21183 0.91941 1.34399 1.08402 0.92713 1.25014 0.97075 0.95563 0.96692 1.69933 1.02454 1.43993 1.37067 0.86664 0.77604 0.80271 0.83510 1.20256 1.21304 1.20213 1.60688 1.34674 1.31261 1.04227 1.21574 0.94609 0.93793 0.91883 0.89358 1.24772 1.02998 0.99106 1.01440 1.85508 1.77907 1.17167 1.07647 1.21472 1.02815 0.97053 0.97413 1.20886 1.00601 0.99924 0.91059 1.20991 0.98518 0.95828 0.97853 1.21030 1.00423 0.95239 0.97784 1.21240 0.99434 0.99911 0.92194 1.19723 0.98459 0.93756 0.96168 1.20240 1.04245 0.97398 0.89719 0.93741 0.92870 0.92307 0.92373 0.92579 0.96992 0.96753 0.92934 0.82182 0.88661 0.86463 0.85725 0.85704 0.85979 0.85882 0.89146 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.40 37.16 0.35 -1.58 16 2 C 0.08 1.33 2.43 -67.71 -0.16 1.17 16 3 H 0.04 0.69 7.17 -51.93 -0.37 0.32 16 4 C -0.12 -2.27 4.74 -26.73 -0.13 -2.39 16 5 C 0.02 0.52 4.80 -27.88 -0.13 0.39 16 6 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 7 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 10 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 N -0.67 -10.42 6.06 -100.05 -0.61 -11.03 16 15 C 0.09 1.29 2.17 -68.01 -0.15 1.14 16 16 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 17 C -0.13 -1.95 5.79 37.43 0.22 -1.73 16 18 S -0.13 -1.74 21.99 -107.50 -2.36 -4.11 16 19 C -0.07 -0.98 6.05 -39.09 -0.24 -1.22 16 20 C -0.10 -1.16 9.65 -39.25 -0.38 -1.54 16 21 C -0.11 -1.09 10.06 -39.73 -0.40 -1.49 16 22 C -0.12 -1.18 10.03 -39.72 -0.40 -1.58 16 23 C -0.11 -1.15 9.48 -39.34 -0.37 -1.52 16 24 C -0.07 -0.92 5.77 -104.55 -0.60 -1.53 16 25 C -0.08 -0.97 4.88 -28.77 -0.14 -1.11 16 26 H 0.04 0.58 7.43 -51.93 -0.39 0.20 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.36 6.11 6.23 -39.29 -0.24 5.87 16 35 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 36 H 0.12 1.89 7.43 -51.93 -0.39 1.50 16 37 H 0.12 1.28 8.05 -52.49 -0.42 0.85 16 38 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.12 1.08 8.01 -52.49 -0.42 0.66 16 41 H 0.09 1.06 8.00 -51.93 -0.42 0.64 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 346.87 15.07 5.23 5.23 Total: -1.00 -28.81 346.87 -11.66 -40.47 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.69 Total: 4.72 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -2.95 Total: -26.17 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.13 Total: -36.56 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.36 Total: -4.11 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.81 -11.66 -40.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.954 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds