Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47053 * 2 1 4 4 C 1.52998 * 109.47153 * 240.00380 * 2 1 3 5 5 C 1.53004 * 109.47273 * 175.00092 * 4 2 1 6 6 C 1.50696 * 109.46995 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00383 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99454 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00422 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99534 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47243 * 60.00066 * 10 8 6 12 12 H 1.48502 * 109.46739 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46845 * 299.99577 * 10 8 6 14 14 N 1.46902 * 109.47164 * 119.99735 * 2 1 3 15 15 C 1.46896 * 111.00049 * 275.00292 * 14 2 1 16 16 H 1.09002 * 109.55657 * 35.00109 * 15 14 2 17 17 C 1.53524 * 109.63746 * 274.74011 * 15 14 2 18 18 S 1.81612 * 107.31791 * 167.52341 * 17 15 14 19 19 C 1.76460 * 102.63504 * 46.41007 * 18 17 15 20 20 C 1.39624 * 117.72514 * 167.37478 * 19 18 17 21 21 C 1.37742 * 120.62267 * 178.56533 * 20 19 18 22 22 C 1.38337 * 119.51354 * 0.05363 * 21 20 19 23 23 C 1.37770 * 120.01363 * 0.34147 * 22 21 20 24 24 C 1.38179 * 122.29224 * 346.62719 * 19 18 17 25 25 C 1.50044 * 124.75641 * 1.86321 * 24 19 18 26 26 H 1.08994 * 109.47309 * 299.99988 * 1 2 3 27 27 H 1.08995 * 109.47121 * 60.00178 * 1 2 3 28 28 H 1.09003 * 109.47053 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46903 * 294.99688 * 4 2 1 30 30 H 1.09000 * 109.47591 * 54.99238 * 4 2 1 31 31 H 1.08996 * 109.46497 * 299.99845 * 5 4 2 32 32 H 1.09004 * 109.46879 * 59.99447 * 5 4 2 33 33 H 0.97001 * 120.00307 * 180.02562 * 9 8 6 34 34 H 1.00905 * 110.99516 * 151.04636 * 14 2 1 35 35 H 1.08999 * 109.88849 * 286.97343 * 17 15 14 36 36 H 1.09006 * 109.88636 * 48.07244 * 17 15 14 37 37 H 1.07993 * 119.68780 * 358.54325 * 20 19 18 38 38 H 1.08005 * 120.24275 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.99547 * 180.35820 * 22 21 20 40 40 H 1.07997 * 119.47451 * 179.97438 * 23 22 21 41 41 H 1.09000 * 108.66633 * 215.72341 * 25 24 19 42 42 H 1.08996 * 108.56031 * 97.75583 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3137 6 6 4.0672 -1.3241 -2.5439 7 1 3.3689 -1.8051 -3.2126 8 6 5.4186 -1.3612 -2.8150 9 7 6.2691 -0.7759 -2.0004 10 14 6.0413 -2.2430 -4.3396 11 1 5.4497 -1.6176 -5.5495 12 1 7.5214 -2.1392 -4.4015 13 1 5.6481 -3.6738 -4.2791 14 7 2.0197 -0.6924 1.1995 15 6 2.0825 0.2226 2.3469 16 1 1.2581 0.9336 2.2920 17 6 3.4172 0.9810 2.3296 18 16 3.2826 2.3396 3.5273 19 6 2.5819 1.5431 4.9374 20 6 2.5876 2.2405 6.1470 21 6 2.0299 1.6873 7.2784 22 6 1.4607 0.4282 7.2119 23 6 1.4606 -0.2660 6.0219 24 6 2.0260 0.2798 4.8713 25 6 1.9831 -0.5724 3.6371 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7517 -1.7715 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9995 -1.0727 -0.4259 33 1 7.2197 -0.8017 -2.1914 34 1 2.9174 -1.1204 1.0287 35 1 4.2277 0.3117 2.6179 36 1 3.6029 1.3821 1.3332 37 1 3.0338 3.2227 6.1960 38 1 2.0373 2.2323 8.2108 39 1 1.0160 -0.0106 8.0929 40 1 1.0142 -1.2485 5.9799 41 1 1.0472 -1.1312 3.6314 42 1 2.8110 -1.2803 3.6754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172490555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = -12.882757 kcal Electronic energy + Delta-G solvation = -20701.534301 eV Core-core repulsion = 17770.572573 eV Total energy + Delta-G solvation = -2930.961728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47923 -39.12872 -36.27768 -34.81690 -32.60201 -31.89833 -31.16525 -29.24247 -27.98023 -26.99056 -23.88254 -23.55986 -22.98215 -21.47736 -21.09605 -18.68411 -18.44263 -17.05747 -16.87789 -16.76115 -16.54055 -15.90571 -15.73016 -15.20160 -14.94424 -14.50103 -14.44008 -14.36853 -14.13378 -13.76116 -13.62352 -13.26138 -13.15729 -12.83348 -12.83173 -12.68339 -12.40451 -12.30629 -12.14776 -12.08970 -11.74533 -11.61431 -11.35878 -11.23219 -10.96424 -10.71444 -10.54817 -9.68630 -9.45496 -8.43512 -8.21020 -6.31205 0.23927 0.38657 0.54393 1.32209 1.39042 1.41114 1.48989 2.39833 2.73016 3.04951 3.13042 3.53819 3.68710 3.87213 3.96531 4.07424 4.14944 4.19024 4.29244 4.38680 4.43789 4.49993 4.53793 4.66927 4.71998 4.77935 4.87221 4.96806 5.00313 5.04850 5.06371 5.13027 5.20319 5.37019 5.42825 5.49949 5.52570 5.57305 5.68735 5.83215 6.00378 6.10342 6.24788 6.33587 6.84964 7.37929 8.89704 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.023777 B = 0.003463 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.304743 B = 8084.074653 C = 8552.253155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.086 3.914 3 H 0.029 0.971 4 C -0.102 4.102 5 C 0.029 3.971 6 C -0.543 4.543 7 H 0.058 0.942 8 C 0.003 3.997 9 N -0.930 5.930 10 Si 0.960 3.040 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.267 1.267 14 N -0.670 5.670 15 C 0.102 3.898 16 H 0.087 0.913 17 C -0.128 4.128 18 S -0.143 6.143 19 C -0.096 4.096 20 C -0.114 4.114 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.113 4.113 24 C -0.090 4.090 25 C -0.071 4.071 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.057 0.943 31 H -0.017 1.017 32 H 0.001 0.999 33 H 0.262 0.738 34 H 0.344 0.656 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.130 0.870 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.143 0.857 41 H 0.101 0.899 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.433 3.182 18.212 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.140 4.140 5 C -0.008 4.008 6 C -0.581 4.581 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.194 1.194 12 H -0.210 1.210 13 H -0.192 1.192 14 N -0.303 5.303 15 C -0.010 4.010 16 H 0.105 0.895 17 C -0.278 4.278 18 S 0.100 5.900 19 C -0.208 4.208 20 C -0.137 4.137 21 C -0.127 4.127 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.097 4.097 25 C -0.108 4.108 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.001 0.999 32 H 0.019 0.981 33 H 0.071 0.929 34 H 0.164 0.836 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.148 0.852 38 H 0.173 0.827 39 H 0.172 0.828 40 H 0.160 0.840 41 H 0.120 0.880 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.502 4.114 18.088 21.826 hybrid contribution 1.507 -0.916 -1.145 2.102 sum -9.995 3.198 16.943 19.930 Atomic orbital electron populations 1.21722 0.93031 1.02384 1.01477 1.21563 0.96468 0.95090 0.89194 0.95308 1.21654 0.96184 0.99991 0.96152 1.18987 0.92027 0.94375 0.95426 1.21660 0.92469 1.34567 1.09431 0.92395 1.25911 0.97398 0.96330 0.99892 1.70068 1.02703 1.45285 1.38944 0.85581 0.76968 0.79350 0.79644 1.19375 1.20997 1.19177 1.60782 1.33732 1.31411 1.04326 1.21547 0.93824 0.93542 0.92076 0.89470 1.24602 1.03302 0.99341 1.00578 1.85455 1.78766 1.17222 1.08602 1.21560 1.04228 0.97856 0.97191 1.21103 1.01099 1.00345 0.91126 1.21382 0.97081 0.96049 0.98232 1.21455 0.99163 0.94879 0.98358 1.21513 0.99000 1.00850 0.91911 1.19796 0.99399 0.93690 0.96788 1.20154 1.04563 0.97118 0.88998 0.92485 0.91885 0.91916 0.92332 0.92437 0.99861 0.98119 0.92903 0.83572 0.89672 0.88780 0.85182 0.82709 0.82807 0.83968 0.88033 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.43 9.40 71.98 0.68 -2.75 16 2 C 0.09 2.85 2.43 44.92 0.11 2.96 16 3 H 0.03 1.02 7.17 -2.39 -0.02 1.00 16 4 C -0.10 -4.06 4.74 30.59 0.15 -3.92 16 5 C 0.03 1.47 4.80 29.85 0.14 1.62 16 6 C -0.54 -30.55 9.11 25.60 0.23 -30.31 16 7 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 8 C 0.00 0.15 5.46 84.66 0.46 0.62 16 9 N -0.93 -55.97 13.29 21.45 0.28 -55.69 16 10 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 14 N -0.67 -21.07 6.06 -470.45 -2.85 -23.92 16 15 C 0.10 2.86 2.17 44.72 0.10 2.96 16 16 H 0.09 2.49 7.01 -2.39 -0.02 2.47 16 17 C -0.13 -4.00 5.79 72.16 0.42 -3.58 16 18 S -0.14 -4.13 21.99 -56.49 -1.24 -5.37 16 19 C -0.10 -2.48 6.05 22.59 0.14 -2.34 16 20 C -0.11 -2.45 9.65 22.49 0.22 -2.23 16 21 C -0.11 -1.77 10.06 22.18 0.22 -1.54 16 22 C -0.12 -1.84 10.03 22.18 0.22 -1.61 16 23 C -0.11 -2.12 9.48 22.42 0.21 -1.91 16 24 C -0.09 -2.15 5.77 -19.82 -0.11 -2.27 16 25 C -0.07 -1.72 4.88 29.27 0.14 -1.58 16 26 H 0.06 1.39 7.43 -2.39 -0.02 1.37 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 31 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H 0.00 0.03 6.43 -2.38 -0.02 0.02 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.20 16 34 H 0.34 12.35 6.23 -89.69 -0.56 11.79 16 35 H 0.08 2.75 8.08 -2.39 -0.02 2.73 16 36 H 0.09 3.33 7.43 -2.38 -0.02 3.31 16 37 H 0.13 2.55 8.05 -2.91 -0.02 2.53 16 38 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 39 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.14 2.06 8.01 -2.91 -0.02 2.04 16 41 H 0.10 2.23 8.00 -2.39 -0.02 2.21 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.80 346.87 1.98 -60.82 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.44 Total: 23.86 kcal Atomic # 6 Polarization: -49.22 SS G_CDS: 3.32 Total: -45.90 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -2.56 Total: -79.61 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -1.24 Total: -5.37 kcal Total: -62.80 1.98 -60.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.936 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds