Wall clock time and date at job start Tue Mar 31 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47117 * 2 1 4 4 C 1.52998 * 109.46787 * 239.99534 * 2 1 3 5 5 C 1.53004 * 109.47072 * 175.00264 * 4 2 1 6 6 C 1.50692 * 109.47595 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99967 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00384 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99871 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99999 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47292 * 90.00432 * 10 8 6 12 12 H 1.48503 * 109.47218 * 209.99761 * 10 8 6 13 13 H 1.48496 * 109.47407 * 330.00078 * 10 8 6 14 14 N 1.46898 * 109.46885 * 119.99982 * 2 1 3 15 15 C 1.46901 * 111.00050 * 274.08128 * 14 2 1 16 16 H 1.09003 * 109.55258 * 33.36611 * 15 14 2 17 17 C 1.53520 * 109.55698 * 153.68407 * 15 14 2 18 18 S 1.81615 * 107.31541 * 192.42927 * 17 15 14 19 19 C 1.76459 * 102.63195 * 313.58783 * 18 17 15 20 20 C 1.39636 * 117.72315 * 192.67328 * 19 18 17 21 21 C 1.37740 * 120.62291 * 181.43545 * 20 19 18 22 22 C 1.38344 * 119.51237 * 359.94587 * 21 20 19 23 23 C 1.37765 * 120.00995 * 359.61491 * 22 21 20 24 24 C 1.38178 * 122.29804 * 13.36988 * 19 18 17 25 25 C 1.50037 * 124.75067 * 358.14480 * 24 19 18 26 26 H 1.09005 * 109.46628 * 64.94197 * 1 2 3 27 27 H 1.08990 * 109.47217 * 184.94066 * 1 2 3 28 28 H 1.08996 * 109.47154 * 304.94916 * 1 2 3 29 29 H 1.08998 * 109.47445 * 295.00199 * 4 2 1 30 30 H 1.09001 * 109.47049 * 55.00823 * 4 2 1 31 31 H 1.09005 * 109.47279 * 300.00333 * 5 4 2 32 32 H 1.08993 * 109.47180 * 59.99898 * 5 4 2 33 33 H 0.97007 * 120.00112 * 180.02562 * 9 8 6 34 34 H 1.00900 * 110.99753 * 150.12780 * 14 2 1 35 35 H 1.09000 * 109.88783 * 311.87873 * 17 15 14 36 36 H 1.08996 * 109.88932 * 72.97724 * 17 15 14 37 37 H 1.08000 * 119.68890 * 1.41966 * 20 19 18 38 38 H 1.08002 * 120.24304 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.99425 * 179.63638 * 22 21 20 40 40 H 1.08003 * 119.46863 * 180.10256 * 23 22 21 41 41 H 1.09000 * 108.66790 * 262.15629 * 25 24 19 42 42 H 1.09007 * 108.66496 * 144.27014 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 6 4.0671 -1.3234 -2.5443 7 1 3.3687 -1.8039 -3.2134 8 6 5.4183 -1.3595 -2.8162 9 7 6.2689 -0.7749 -2.0012 10 14 6.0409 -2.2402 -4.3414 11 1 6.0903 -1.2861 -5.4784 12 1 7.4026 -2.7739 -4.0837 13 1 5.1250 -3.3605 -4.6747 14 7 2.0197 -0.6925 1.1994 15 6 2.1031 0.2278 2.3414 16 1 1.3050 0.9670 2.2733 17 6 1.9638 -0.5631 3.6499 18 16 1.7014 0.6411 4.9839 19 6 2.9375 1.8567 4.6552 20 6 3.1995 2.8019 5.6490 21 6 4.1313 3.7954 5.4443 22 6 4.8127 3.8533 4.2416 23 6 4.5631 2.9169 3.2625 24 6 3.6271 1.9037 3.4587 25 6 3.4494 0.9308 2.3305 26 1 -0.3633 0.4353 -0.9310 27 1 -0.3633 -1.0237 0.0885 28 1 -0.3633 0.5887 0.8423 29 1 1.7516 -1.7716 -1.2055 30 1 1.6054 -0.2618 -2.1369 31 1 3.8533 0.4368 -1.3574 32 1 3.9994 -1.0729 -0.4260 33 1 7.2195 -0.8000 -2.1927 34 1 2.9103 -1.1331 1.0243 35 1 1.1102 -1.2378 3.5863 36 1 2.8742 -1.1321 3.8379 37 1 2.6664 2.7537 6.5870 38 1 4.3289 4.5236 6.2170 39 1 5.5407 4.6325 4.0705 40 1 5.1012 2.9694 2.3275 41 1 4.2362 0.1788 2.3910 42 1 3.5553 1.4671 1.3874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172490556.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:38 Heat of formation + Delta-G solvation = 1.368869 kcal Electronic energy + Delta-G solvation = -20868.122345 eV Core-core repulsion = 17937.778614 eV Total energy + Delta-G solvation = -2930.343731 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.54503 -37.86152 -34.83129 -32.92610 -31.37010 -30.97997 -29.52297 -28.30366 -26.72845 -25.11402 -22.84010 -22.31247 -21.46799 -20.43217 -19.70343 -17.62591 -16.44626 -15.92299 -15.82004 -15.67451 -14.71124 -14.49837 -14.47828 -14.25307 -13.71871 -13.35043 -13.22020 -12.93633 -12.61893 -12.53238 -12.41106 -11.83851 -11.66759 -11.64329 -11.40230 -11.35800 -11.02595 -10.94797 -10.84734 -10.55547 -10.44590 -10.08170 -9.83917 -9.70007 -9.33988 -9.09021 -8.78227 -8.41452 -8.16863 -7.41068 -6.06332 -4.08275 1.15775 1.28226 1.60026 2.34435 3.28295 3.35038 3.38435 3.62078 4.41411 4.42300 4.63424 4.70891 4.84537 4.89016 5.12068 5.21288 5.30007 5.36533 5.39805 5.47264 5.56338 5.60712 5.68811 5.72405 5.84439 5.90710 5.96506 6.11091 6.16804 6.23966 6.30523 6.38985 6.45668 6.47172 6.50546 6.83639 6.85695 7.00550 7.35774 7.54125 7.71461 7.77552 7.92727 8.36523 8.98142 9.56428 11.04808 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.017388 B = 0.004016 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.951590 B = 6969.786436 C = 8041.308057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.082 3.918 3 H 0.040 0.960 4 C -0.116 4.116 5 C 0.021 3.979 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.058 3.942 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.273 1.273 14 N -0.676 5.676 15 C 0.092 3.908 16 H 0.088 0.912 17 C -0.088 4.088 18 S -0.133 6.133 19 C -0.077 4.077 20 C -0.103 4.103 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.107 4.107 24 C -0.068 4.068 25 C -0.121 4.121 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.012 0.988 32 H 0.014 0.986 33 H 0.260 0.740 34 H 0.355 0.645 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.085 0.915 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 6.772 14.423 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 H 0.058 0.942 4 C -0.154 4.154 5 C -0.016 4.016 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.309 5.309 15 C -0.021 4.021 16 H 0.106 0.894 17 C -0.237 4.237 18 S 0.110 5.890 19 C -0.189 4.189 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.127 4.127 24 C -0.075 4.075 25 C -0.159 4.159 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.177 0.823 35 H 0.138 0.862 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.103 0.897 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.355 6.364 15.470 18.698 hybrid contribution 2.363 0.207 -2.069 3.148 sum -5.992 6.571 13.400 16.083 Atomic orbital electron populations 1.21814 0.95565 1.01818 1.00351 1.21638 0.94620 0.96223 0.90231 0.94212 1.21851 0.99694 0.99531 0.94282 1.19122 0.88722 0.96807 0.96915 1.21229 0.91962 1.34324 1.08302 0.92667 1.25006 0.97066 0.95569 0.96679 1.69947 1.02390 1.44194 1.36974 0.86610 0.78165 0.80001 0.83341 1.20694 1.21227 1.19831 1.60763 1.35268 1.30473 1.04445 1.21551 0.96377 0.93440 0.90697 0.89402 1.23863 1.06994 0.98562 0.94238 1.85355 1.42084 1.21601 1.39990 1.21366 1.00872 1.00246 0.96456 1.20855 0.98868 0.94896 0.97950 1.20991 0.96540 0.98220 0.97523 1.21068 1.00104 0.99141 0.93835 1.21365 0.97348 0.94225 0.99717 1.19658 0.97046 0.97179 0.93595 1.21114 0.99457 0.98251 0.97115 0.92862 0.92219 0.93783 0.92372 0.92611 0.97001 0.96742 0.93024 0.82300 0.86246 0.89186 0.85782 0.85695 0.85869 0.85605 0.89660 0.89360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.39 37.16 0.35 -1.60 16 2 C 0.08 1.35 2.44 -67.71 -0.17 1.19 16 3 H 0.04 0.68 7.19 -51.93 -0.37 0.31 16 4 C -0.12 -2.27 4.74 -26.73 -0.13 -2.40 16 5 C 0.02 0.52 4.80 -27.89 -0.13 0.39 16 6 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 7 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.13 13.29 55.43 0.74 -25.39 16 10 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 14 N -0.68 -10.45 6.07 -100.05 -0.61 -11.06 16 15 C 0.09 1.27 2.18 -68.01 -0.15 1.12 16 16 H 0.09 1.26 7.12 -51.93 -0.37 0.89 16 17 C -0.09 -1.09 6.14 37.43 0.23 -0.86 16 18 S -0.13 -1.67 21.99 -107.50 -2.36 -4.03 16 19 C -0.08 -1.03 6.05 -39.08 -0.24 -1.27 16 20 C -0.10 -1.21 9.65 -39.24 -0.38 -1.59 16 21 C -0.11 -1.20 10.06 -39.72 -0.40 -1.60 16 22 C -0.12 -1.37 10.03 -39.72 -0.40 -1.77 16 23 C -0.11 -1.40 9.48 -39.35 -0.37 -1.77 16 24 C -0.07 -0.95 5.77 -104.56 -0.60 -1.56 16 25 C -0.12 -1.76 4.55 -28.77 -0.13 -1.89 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.58 7.58 -51.93 -0.39 0.18 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.01 0.36 6.43 -51.93 -0.33 0.03 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 34 H 0.35 6.11 6.15 -39.29 -0.24 5.86 16 35 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.12 8.08 -51.93 -0.42 0.70 16 37 H 0.12 1.26 8.05 -52.49 -0.42 0.83 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.13 1.60 8.01 -52.48 -0.42 1.18 16 41 H 0.09 1.31 8.09 -51.93 -0.42 0.89 16 42 H 0.09 1.40 7.35 -51.93 -0.38 1.01 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -28.60 347.14 -11.65 -40.26 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.70 Total: 5.38 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: -2.93 Total: -26.71 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.13 Total: -36.45 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.36 Total: -4.03 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.60 -11.65 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172490556.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.625 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds