Wall clock time and date at job start Tue Mar 31 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09011 * 109.47273 * 2 1 4 4 C 1.52999 * 109.47384 * 240.00224 * 2 1 3 5 5 C 1.53007 * 109.47115 * 174.84303 * 4 2 1 6 6 C 1.50694 * 109.46928 * 175.98004 * 5 4 2 7 7 H 1.08000 * 120.00460 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99817 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00166 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00131 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47151 * 90.00431 * 10 8 6 12 12 H 1.48500 * 109.47310 * 210.00392 * 10 8 6 13 13 H 1.48500 * 109.46903 * 330.00240 * 10 8 6 14 14 N 1.46899 * 109.47171 * 119.99601 * 2 1 3 15 15 C 1.45166 * 111.00368 * 288.34528 * 14 2 1 16 16 C 1.51479 * 116.44995 * 198.35346 * 15 14 2 17 17 S 1.82263 * 109.57345 * 290.79216 * 16 15 14 18 18 C 1.77501 * 101.06035 * 79.80143 * 17 16 15 19 19 C 1.38572 * 120.34898 * 113.94601 * 18 17 16 20 20 C 1.38363 * 119.13356 * 179.66225 * 19 18 17 21 21 C 1.38319 * 119.87879 * 359.90727 * 20 19 18 22 22 C 1.38286 * 120.60765 * 0.19187 * 21 20 19 23 23 C 1.37796 * 118.39663 * 293.86769 * 18 17 16 24 24 C 1.47008 * 110.99787 * 55.06682 * 14 2 1 25 25 H 1.09002 * 109.47127 * 174.33309 * 1 2 3 26 26 H 1.09000 * 109.47659 * 294.33774 * 1 2 3 27 27 H 1.09002 * 109.47162 * 54.34135 * 1 2 3 28 28 H 1.09002 * 109.46877 * 294.83572 * 4 2 1 29 29 H 1.08998 * 109.47592 * 54.84354 * 4 2 1 30 30 H 1.09004 * 109.47047 * 295.98124 * 5 4 2 31 31 H 1.09001 * 109.46861 * 55.97977 * 5 4 2 32 32 H 0.97000 * 120.00730 * 179.97438 * 9 8 6 33 33 H 1.08999 * 108.05874 * 320.11688 * 15 14 2 34 34 H 1.09001 * 108.05148 * 76.63754 * 15 14 2 35 35 H 1.08997 * 109.45439 * 50.82796 * 16 15 14 36 36 H 1.09005 * 109.44960 * 170.78400 * 16 15 14 37 37 H 1.07997 * 120.43553 * 359.64156 * 19 18 17 38 38 H 1.07997 * 120.05885 * 179.88099 * 20 19 18 39 39 H 1.08003 * 119.69911 * 180.22200 * 21 20 19 40 40 H 1.08001 * 120.13249 * 180.02562 * 22 21 20 41 41 H 1.08992 * 109.57353 * 261.71461 * 24 14 2 42 42 H 1.08998 * 109.57365 * 22.08520 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5646 -0.6098 -1.3157 6 6 4.0753 -1.4027 -2.4910 7 1 3.3821 -1.9334 -3.1267 8 6 5.4279 -1.4516 -2.7541 9 7 5.8737 -2.1432 -3.7801 10 14 6.6271 -0.5344 -1.6541 11 1 7.0627 -1.4233 -0.5472 12 1 7.8100 -0.1186 -2.4498 13 1 5.9619 0.6680 -1.0910 14 7 2.0196 -0.6924 1.1995 15 6 1.7909 0.1053 2.3905 16 6 2.6042 -0.2615 3.6147 17 16 2.0497 -1.8752 4.2552 18 6 2.8840 -2.9854 3.1498 19 6 3.8769 -3.8288 3.6220 20 6 4.5060 -4.6891 2.7395 21 6 4.1381 -4.6986 1.4062 22 6 3.1476 -3.8521 0.9430 23 6 2.5181 -2.9853 1.8213 24 6 1.4542 -2.0461 1.2940 25 1 -0.3633 -1.0227 -0.1015 26 1 -0.3634 0.4235 0.9363 27 1 -0.3633 0.5991 -0.8350 28 1 1.7541 -1.7721 -1.2042 29 1 1.6033 -0.2635 -2.1369 30 1 3.8477 0.4363 -1.4325 31 1 3.9980 -1.0031 -0.3961 32 1 6.8252 -2.1773 -3.9655 33 1 2.0003 1.1465 2.1452 34 1 0.7354 0.0280 2.6513 35 1 3.6588 -0.3206 3.3455 36 1 2.4678 0.5000 4.3827 37 1 4.1563 -3.8147 4.6651 38 1 5.2831 -5.3515 3.0911 39 1 4.6285 -5.3738 0.7206 40 1 2.8661 -3.8663 -0.0996 41 1 0.6030 -2.0397 1.9746 42 1 1.1320 -2.3770 0.3067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172509933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:03 Heat of formation + Delta-G solvation = 26.781039 kcal Electronic energy + Delta-G solvation = -21964.464136 eV Core-core repulsion = 19035.222360 eV Total energy + Delta-G solvation = -2929.241777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.56342 -38.07656 -34.05396 -32.42029 -31.99729 -30.69453 -30.17889 -28.63292 -25.76618 -25.38528 -22.65392 -22.35039 -21.48475 -20.51839 -19.13207 -17.41029 -16.63870 -16.18520 -16.10148 -15.06887 -14.76863 -14.56480 -14.24948 -14.03488 -13.63016 -13.33248 -13.21692 -12.86312 -12.67061 -12.46451 -12.34833 -12.17367 -11.90441 -11.58622 -11.44067 -11.23079 -10.97683 -10.92456 -10.83505 -10.39105 -10.05783 -9.91491 -9.62307 -9.49609 -9.05552 -8.74126 -8.53929 -8.45760 -7.96764 -7.62726 -5.97926 -3.93899 1.20793 1.56983 1.94403 2.58716 3.36956 3.43427 3.49409 3.76940 4.18091 4.52700 4.92320 4.98217 5.01625 5.12737 5.19120 5.23383 5.30290 5.38322 5.42998 5.50859 5.55646 5.59451 5.66728 5.77073 5.80541 5.92953 5.98800 6.07334 6.11805 6.19249 6.24477 6.43857 6.49328 6.65090 6.68855 6.79129 7.02197 7.12759 7.33371 7.38203 7.49925 7.67371 7.90382 8.61404 9.07873 9.66843 11.15696 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.006887 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.490160 B = 4064.451930 C = 5055.606588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.079 0.921 4 C -0.095 4.095 5 C -0.006 4.006 6 C -0.514 4.514 7 H 0.068 0.932 8 C 0.067 3.933 9 N -0.908 5.908 10 Si 0.877 3.123 11 H -0.278 1.278 12 H -0.292 1.292 13 H -0.266 1.266 14 N -0.533 5.533 15 C 0.065 3.935 16 C -0.086 4.086 17 S -0.180 6.180 18 C -0.096 4.096 19 C -0.083 4.083 20 C -0.130 4.130 21 C -0.099 4.099 22 C -0.094 4.094 23 C -0.035 4.035 24 C 0.092 3.908 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.007 0.993 31 H 0.027 0.973 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.061 0.939 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 0.488 15.349 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.097 0.903 4 C -0.133 4.133 5 C -0.044 4.044 6 C -0.552 4.552 7 H 0.086 0.914 8 C -0.133 4.133 9 N -0.548 5.548 10 Si 0.705 3.295 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.191 1.191 14 N -0.257 5.257 15 C -0.065 4.065 16 C -0.234 4.234 17 S 0.054 5.946 18 C -0.208 4.208 19 C -0.104 4.104 20 C -0.150 4.150 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.038 4.038 24 C -0.035 4.035 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.079 0.921 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.722 0.260 16.162 18.367 hybrid contribution 0.945 0.735 -0.486 1.292 sum -7.777 0.995 15.676 17.527 Atomic orbital electron populations 1.22526 0.98139 1.02116 1.01486 1.21913 0.91619 0.98225 0.90272 0.90284 1.21599 0.99291 0.98938 0.93445 1.19474 0.91183 0.96298 0.97405 1.21197 0.92696 1.30119 1.11238 0.91406 1.24977 0.98364 0.95022 0.94937 1.69921 1.14198 1.42015 1.28626 0.86808 0.80676 0.81149 0.80832 1.20397 1.21805 1.19074 1.60350 1.61527 1.01693 1.02102 1.21395 0.97488 0.97566 0.90034 1.23466 1.04083 0.96015 0.99834 1.85594 1.64465 1.00881 1.43635 1.21095 1.01714 1.02290 0.95704 1.21177 0.94174 0.95513 0.99550 1.21181 1.00360 0.99743 0.93678 1.21322 0.96489 0.98362 0.95532 1.21376 0.95514 0.94742 0.99833 1.20114 0.96515 0.95173 0.92043 1.21318 0.93322 0.87529 1.01348 0.92476 0.93257 0.92066 0.92643 0.92506 0.97491 0.95503 0.92978 0.90685 0.94536 0.88736 0.87387 0.85556 0.85931 0.85729 0.84744 0.92076 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 8.66 37.15 0.32 -1.96 16 2 C 0.09 1.32 2.25 -67.72 -0.15 1.17 16 3 H 0.08 1.21 7.72 -51.92 -0.40 0.81 16 4 C -0.10 -1.79 4.53 -26.73 -0.12 -1.91 16 5 C -0.01 -0.15 3.98 -27.88 -0.11 -0.26 16 6 C -0.51 -14.49 9.66 -34.44 -0.33 -14.83 16 7 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.91 -28.08 13.96 55.43 0.77 -27.31 16 10 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 13 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 14 N -0.53 -8.13 3.64 -229.98 -0.84 -8.97 16 15 C 0.07 0.83 4.33 -5.53 -0.02 0.81 16 16 C -0.09 -1.05 6.36 36.39 0.23 -0.82 16 17 S -0.18 -2.42 20.85 -107.50 -2.24 -4.66 16 18 C -0.10 -1.47 5.62 -39.62 -0.22 -1.69 16 19 C -0.08 -1.17 9.86 -39.41 -0.39 -1.56 16 20 C -0.13 -1.79 10.06 -39.51 -0.40 -2.19 16 21 C -0.10 -1.51 10.02 -39.53 -0.40 -1.90 16 22 C -0.09 -1.57 9.67 -39.46 -0.38 -1.95 16 23 C -0.03 -0.55 5.43 -104.34 -0.57 -1.12 16 24 C 0.09 1.37 3.73 -4.58 -0.02 1.35 16 25 H 0.06 0.70 6.86 -51.93 -0.36 0.35 16 26 H 0.05 0.56 6.88 -51.93 -0.36 0.20 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.05 6.16 -51.93 -0.32 0.73 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.01 0.17 7.20 -51.93 -0.37 -0.21 16 31 H 0.03 0.66 7.08 -51.93 -0.37 0.29 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.07 0.89 7.58 -51.93 -0.39 0.50 16 34 H 0.04 0.44 6.84 -51.93 -0.36 0.09 16 35 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 40 H 0.13 2.31 7.98 -52.49 -0.42 1.90 16 41 H 0.06 0.86 6.93 -51.93 -0.36 0.50 16 42 H 0.09 1.36 4.84 -51.93 -0.25 1.10 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -31.01 335.38 -11.07 -42.08 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.50 Total: 1.06 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -2.66 Total: -24.99 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.06 Total: -36.28 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.24 Total: -4.66 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.01 -11.07 -42.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.865 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds