Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09011 * 109.47273 * 2 1 4 4 C 1.52999 * 109.47384 * 240.00224 * 2 1 3 5 5 C 1.53007 * 109.47115 * 174.84303 * 4 2 1 6 6 C 1.50694 * 109.46928 * 175.98004 * 5 4 2 7 7 H 1.08000 * 120.00460 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99817 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00166 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 120.00131 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47151 * 90.00431 * 10 8 6 12 12 H 1.48500 * 109.47310 * 210.00392 * 10 8 6 13 13 H 1.48500 * 109.46903 * 330.00240 * 10 8 6 14 14 N 1.46899 * 109.47171 * 119.99601 * 2 1 3 15 15 C 1.45166 * 111.00368 * 288.34528 * 14 2 1 16 16 C 1.51479 * 116.44995 * 198.35346 * 15 14 2 17 17 S 1.82263 * 109.57345 * 290.79216 * 16 15 14 18 18 C 1.77501 * 101.06035 * 79.80143 * 17 16 15 19 19 C 1.38572 * 120.34898 * 113.94601 * 18 17 16 20 20 C 1.38363 * 119.13356 * 179.66225 * 19 18 17 21 21 C 1.38319 * 119.87879 * 359.90727 * 20 19 18 22 22 C 1.38286 * 120.60765 * 0.19187 * 21 20 19 23 23 C 1.37796 * 118.39663 * 293.86769 * 18 17 16 24 24 C 1.47008 * 110.99787 * 55.06682 * 14 2 1 25 25 H 1.09002 * 109.47127 * 174.33309 * 1 2 3 26 26 H 1.09000 * 109.47659 * 294.33774 * 1 2 3 27 27 H 1.09002 * 109.47162 * 54.34135 * 1 2 3 28 28 H 1.09002 * 109.46877 * 294.83572 * 4 2 1 29 29 H 1.08998 * 109.47592 * 54.84354 * 4 2 1 30 30 H 1.09004 * 109.47047 * 295.98124 * 5 4 2 31 31 H 1.09001 * 109.46861 * 55.97977 * 5 4 2 32 32 H 0.97000 * 120.00730 * 179.97438 * 9 8 6 33 33 H 1.08999 * 108.05874 * 320.11688 * 15 14 2 34 34 H 1.09001 * 108.05148 * 76.63754 * 15 14 2 35 35 H 1.08997 * 109.45439 * 50.82796 * 16 15 14 36 36 H 1.09005 * 109.44960 * 170.78400 * 16 15 14 37 37 H 1.07997 * 120.43553 * 359.64156 * 19 18 17 38 38 H 1.07997 * 120.05885 * 179.88099 * 20 19 18 39 39 H 1.08003 * 119.69911 * 180.22200 * 21 20 19 40 40 H 1.08001 * 120.13249 * 180.02562 * 22 21 20 41 41 H 1.08992 * 109.57353 * 261.71461 * 24 14 2 42 42 H 1.08998 * 109.57365 * 22.08520 * 24 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5646 -0.6098 -1.3157 6 6 4.0753 -1.4027 -2.4910 7 1 3.3821 -1.9334 -3.1267 8 6 5.4279 -1.4516 -2.7541 9 7 5.8737 -2.1432 -3.7801 10 14 6.6271 -0.5344 -1.6541 11 1 7.0627 -1.4233 -0.5472 12 1 7.8100 -0.1186 -2.4498 13 1 5.9619 0.6680 -1.0910 14 7 2.0196 -0.6924 1.1995 15 6 1.7909 0.1053 2.3905 16 6 2.6042 -0.2615 3.6147 17 16 2.0497 -1.8752 4.2552 18 6 2.8840 -2.9854 3.1498 19 6 3.8769 -3.8288 3.6220 20 6 4.5060 -4.6891 2.7395 21 6 4.1381 -4.6986 1.4062 22 6 3.1476 -3.8521 0.9430 23 6 2.5181 -2.9853 1.8213 24 6 1.4542 -2.0461 1.2940 25 1 -0.3633 -1.0227 -0.1015 26 1 -0.3634 0.4235 0.9363 27 1 -0.3633 0.5991 -0.8350 28 1 1.7541 -1.7721 -1.2042 29 1 1.6033 -0.2635 -2.1369 30 1 3.8477 0.4363 -1.4325 31 1 3.9980 -1.0031 -0.3961 32 1 6.8252 -2.1773 -3.9655 33 1 2.0003 1.1465 2.1452 34 1 0.7354 0.0280 2.6513 35 1 3.6588 -0.3206 3.3455 36 1 2.4678 0.5000 4.3827 37 1 4.1563 -3.8147 4.6651 38 1 5.2831 -5.3515 3.0911 39 1 4.6285 -5.3738 0.7206 40 1 2.8661 -3.8663 -0.0996 41 1 0.6030 -2.0397 1.9746 42 1 1.1320 -2.3770 0.3067 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172509933.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = 10.126015 kcal Electronic energy + Delta-G solvation = -21965.186353 eV Core-core repulsion = 19035.222360 eV Total energy + Delta-G solvation = -2929.963993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 291.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.71826 -39.24014 -35.72856 -34.21652 -33.09426 -31.91155 -31.76893 -29.78143 -27.15449 -26.87280 -23.79686 -23.59936 -22.79424 -22.12370 -20.41512 -18.80519 -18.49976 -17.36495 -17.19047 -16.32180 -16.18860 -15.92053 -15.70921 -15.22979 -14.90938 -14.64045 -14.53000 -14.32564 -14.09505 -13.76149 -13.69222 -13.43478 -13.22669 -12.93748 -12.89031 -12.63107 -12.34422 -12.03552 -12.00194 -11.91520 -11.78158 -11.45893 -11.32697 -11.11958 -11.04197 -10.71494 -9.88265 -9.68315 -9.09325 -8.65775 -8.26108 -6.26381 0.08886 0.41082 0.87274 1.33636 1.34175 1.46553 1.55402 2.36964 2.63929 3.06007 3.11106 3.79812 3.87183 3.95502 4.06014 4.13486 4.19930 4.31455 4.32622 4.37721 4.43561 4.48982 4.57145 4.68465 4.71727 4.79446 4.88541 4.89634 4.92910 4.99644 5.06403 5.08676 5.24959 5.35375 5.37329 5.49986 5.60294 5.61485 5.70724 5.75974 5.97850 6.19548 6.32936 6.35665 6.81692 7.37637 8.90789 Molecular weight = 291.14amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.006887 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.490160 B = 4064.451930 C = 5055.606588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.084 0.916 4 C -0.089 4.089 5 C 0.005 3.995 6 C -0.518 4.518 7 H 0.031 0.969 8 C 0.009 3.991 9 N -0.953 5.953 10 Si 0.942 3.058 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.251 1.251 14 N -0.553 5.553 15 C 0.063 3.937 16 C -0.082 4.082 17 S -0.171 6.171 18 C -0.112 4.112 19 C -0.084 4.084 20 C -0.127 4.127 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.048 4.048 24 C 0.099 3.901 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.005 0.995 31 H 0.020 0.980 32 H 0.263 0.737 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 2.137 18.238 20.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.012 4.012 3 H 0.102 0.898 4 C -0.127 4.127 5 C -0.032 4.032 6 C -0.557 4.557 7 H 0.049 0.951 8 C -0.187 4.187 9 N -0.594 5.594 10 Si 0.767 3.233 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.174 1.174 14 N -0.277 5.277 15 C -0.067 4.067 16 C -0.230 4.230 17 S 0.064 5.936 18 C -0.223 4.223 19 C -0.105 4.105 20 C -0.147 4.147 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.052 4.052 24 C -0.028 4.028 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.157 0.843 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.147 0.853 40 H 0.131 0.869 41 H 0.089 0.911 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.033 1.914 19.058 21.177 hybrid contribution 1.005 0.157 -1.423 1.749 sum -8.029 2.071 17.635 19.487 Atomic orbital electron populations 1.22409 0.95646 1.02378 1.02864 1.21717 0.93498 0.97502 0.88480 0.89762 1.21476 0.96100 0.99260 0.95887 1.19318 0.94330 0.94835 0.94729 1.21553 0.92321 1.29791 1.11991 0.95075 1.25842 1.00409 0.96062 0.96362 1.70065 1.14741 1.43939 1.30676 0.85768 0.78341 0.80280 0.78873 1.20052 1.21240 1.17429 1.60274 1.62246 1.02026 1.03119 1.21477 0.98336 0.97738 0.89150 1.23550 1.02870 0.96027 1.00514 1.85517 1.64301 1.01109 1.42715 1.21371 1.02121 1.03080 0.95756 1.21536 0.93508 0.94771 1.00693 1.21500 1.00601 0.99796 0.92768 1.21517 0.96482 0.98499 0.96776 1.21357 0.97074 0.96459 0.99202 1.20267 0.96965 0.95365 0.92588 1.21220 0.93272 0.87425 1.00861 0.92724 0.91335 0.91278 0.93465 0.92680 0.97668 0.96151 0.92829 0.89312 0.93238 0.90354 0.84261 0.83242 0.83021 0.85271 0.86946 0.91083 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 8.66 71.98 0.62 -3.28 16 2 C 0.10 2.74 2.25 44.91 0.10 2.84 16 3 H 0.08 2.35 7.72 -2.38 -0.02 2.34 16 4 C -0.09 -3.38 4.53 30.60 0.14 -3.24 16 5 C 0.01 0.25 3.98 29.85 0.12 0.37 16 6 C -0.52 -30.14 9.66 25.60 0.25 -29.89 16 7 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 8 C 0.01 0.56 5.47 84.65 0.46 1.03 16 9 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 10 Si 0.94 46.39 27.47 68.60 1.88 48.28 16 11 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 13 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 14 N -0.55 -15.90 3.64 -881.53 -3.21 -19.11 16 15 C 0.06 1.39 4.33 86.13 0.37 1.77 16 16 C -0.08 -1.74 6.36 71.48 0.45 -1.29 16 17 S -0.17 -4.13 20.85 -56.49 -1.18 -5.31 16 18 C -0.11 -3.24 5.62 22.24 0.13 -3.12 16 19 C -0.08 -2.21 9.86 22.38 0.22 -1.99 16 20 C -0.13 -3.33 10.06 22.32 0.22 -3.10 16 21 C -0.11 -3.54 10.02 22.30 0.22 -3.32 16 22 C -0.12 -4.18 9.67 22.35 0.22 -3.96 16 23 C -0.05 -1.53 5.43 -19.68 -0.11 -1.64 16 24 C 0.10 2.90 3.73 85.76 0.32 3.22 16 25 H 0.05 1.26 6.86 -2.39 -0.02 1.24 16 26 H 0.07 1.30 6.88 -2.39 -0.02 1.28 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.85 6.16 -2.39 -0.01 1.83 16 29 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.00 0.24 7.20 -2.39 -0.02 0.22 16 31 H 0.02 0.99 7.08 -2.39 -0.02 0.97 16 32 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 33 H 0.09 1.76 7.58 -2.39 -0.02 1.74 16 34 H 0.05 1.00 6.84 -2.39 -0.02 0.98 16 35 H 0.08 1.97 8.13 -2.39 -0.02 1.95 16 36 H 0.14 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.13 3.72 8.06 -2.91 -0.02 3.69 16 40 H 0.11 4.24 7.98 -2.91 -0.02 4.22 16 41 H 0.07 1.89 6.93 -2.39 -0.02 1.87 16 42 H 0.08 2.42 4.84 -2.39 -0.01 2.40 16 Total: -1.00 -67.91 335.38 2.48 -65.43 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 0.94 Total: 16.66 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 3.74 Total: -45.62 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.91 Total: -79.44 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.88 Total: 48.28 kcal Atomic # 16 Polarization: -4.13 SS G_CDS: -1.18 Total: -5.31 kcal Total: -67.91 2.48 -65.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172509933.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.557 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds