Wall clock time and date at job start Tue Mar 31 2020 08:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00145 * 2 1 4 4 H 1.48502 * 109.47594 * 240.00364 * 3 2 1 5 5 H 1.48499 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46948 * 120.00185 * 3 2 1 7 7 C 1.37876 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00395 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47327 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47105 * 60.00248 * 11 10 9 13 13 N 1.46902 * 109.46986 * 59.99672 * 12 11 10 14 14 C 1.46900 * 110.99721 * 154.99921 * 13 12 11 15 15 C 1.50701 * 109.47026 * 179.97438 * 14 13 12 16 16 C 1.38283 * 120.00461 * 259.98017 * 15 14 13 17 17 C 1.38205 * 120.14926 * 180.02562 * 16 15 14 18 18 C 1.38291 * 120.14649 * 0.02562 * 17 16 15 19 19 C 1.38527 * 119.99574 * 359.97438 * 18 17 16 20 20 O 1.35994 * 120.07075 * 180.27982 * 19 18 17 21 21 C 1.38522 * 119.99573 * 80.00483 * 15 14 13 22 22 O 1.35995 * 120.07525 * 359.95620 * 21 15 14 23 23 C 1.53000 * 109.46936 * 299.99857 * 12 11 10 24 24 C 1.52995 * 109.47107 * 60.00144 * 23 12 11 25 25 H 0.96997 * 119.99511 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47156 * 300.00693 * 9 7 2 27 27 H 1.09006 * 109.46862 * 59.99920 * 10 9 7 28 28 H 1.09000 * 109.46904 * 300.00300 * 10 9 7 29 29 H 1.08990 * 109.47571 * 300.00008 * 11 10 9 30 30 H 1.09002 * 109.46774 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.47109 * 179.97438 * 12 11 10 32 32 H 1.00901 * 110.99890 * 31.04840 * 13 12 11 33 33 H 1.09001 * 109.47309 * 60.00211 * 14 13 12 34 34 H 1.09002 * 109.47655 * 300.00003 * 14 13 12 35 35 H 1.08001 * 119.92659 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.93073 * 180.02562 * 17 16 15 37 37 H 1.07998 * 120.00254 * 180.02562 * 18 17 16 38 38 H 0.96696 * 114.00006 * 269.72644 * 20 19 18 39 39 H 0.96706 * 113.99739 * 270.01781 * 22 21 15 40 40 H 1.08999 * 109.47063 * 179.97438 * 23 12 11 41 41 H 1.09000 * 109.46904 * 299.99715 * 23 12 11 42 42 H 1.08999 * 109.47036 * 179.97438 * 24 23 12 43 43 H 1.09000 * 109.47589 * 59.99990 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 0.6002 -5.0685 -1.2489 13 7 1.4444 -4.9910 -2.4486 14 6 0.7893 -5.6337 -3.5956 15 6 1.6828 -5.5341 -4.8051 16 6 1.4468 -4.5632 -5.7611 17 6 2.2640 -4.4694 -6.8717 18 6 3.3211 -5.3465 -7.0321 19 6 3.5630 -6.3214 -6.0782 20 8 4.6056 -7.1811 -6.2316 21 6 2.7403 -6.4154 -4.9594 22 8 2.9740 -7.3706 -4.0199 23 6 -0.3940 -3.9055 -1.2489 24 6 0.3710 -2.5806 -1.2495 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8538 -5.0446 0.8902 30 1 2.1885 -5.8156 -0.0003 31 1 0.0554 -6.0127 -1.2487 32 1 2.3530 -5.3951 -2.2780 33 1 -0.1569 -5.1331 -3.8012 34 1 0.6028 -6.6830 -3.3667 35 1 0.6215 -3.8772 -5.6400 36 1 2.0767 -3.7096 -7.6159 37 1 3.9585 -5.2709 -7.9007 38 1 4.3807 -7.9906 -6.7103 39 1 3.5699 -7.0888 -3.3124 40 1 -1.0207 -3.9632 -2.1389 41 1 -1.0204 -3.9631 -0.3587 42 1 -0.3373 -1.7521 -1.2500 43 1 0.9974 -2.5230 -2.1397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:03 Heat of formation + Delta-G solvation = -76.320423 kcal Electronic energy + Delta-G solvation = -23697.151973 eV Core-core repulsion = 20320.686511 eV Total energy + Delta-G solvation = -3376.465463 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.37183 -38.32183 -37.11673 -36.62977 -34.44540 -32.44733 -30.59990 -29.66115 -29.23056 -28.37182 -25.16065 -24.14115 -22.62844 -21.72752 -21.23109 -20.49372 -18.47498 -18.32305 -17.95089 -16.37800 -16.21308 -15.79070 -15.64537 -14.93289 -14.75262 -14.44863 -14.25326 -14.01431 -13.49505 -12.82444 -12.71413 -12.51906 -12.19390 -12.12021 -11.95310 -11.87636 -11.42068 -11.35492 -11.16550 -11.07038 -10.72631 -10.58797 -10.20675 -10.16940 -10.00493 -9.67834 -9.21435 -8.86170 -8.75443 -8.62265 -8.48111 -8.14403 -7.92448 -5.85613 -3.90631 1.06341 1.12302 3.35458 3.38604 3.42736 3.45993 3.94224 4.19850 4.52842 4.56736 4.78590 4.86798 5.21850 5.23659 5.41131 5.43764 5.49579 5.53206 5.65623 5.72827 5.77575 5.89176 6.14746 6.19967 6.26672 6.36124 6.44675 6.46575 6.53371 6.58424 6.59323 6.82448 6.90856 7.07679 7.30020 7.32379 7.42384 7.58218 7.61557 7.69659 7.76395 7.90745 8.24351 8.34237 8.63899 9.13224 9.72724 11.19602 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.004175 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.255880 B = 6704.379014 C = 7361.219463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.507 4.507 8 H 0.050 0.950 9 C 0.052 3.948 10 C -0.102 4.102 11 C -0.118 4.118 12 C 0.094 3.906 13 N -0.661 5.661 14 C 0.100 3.900 15 C -0.082 4.082 16 C -0.091 4.091 17 C -0.112 4.112 18 C -0.136 4.136 19 C 0.076 3.924 20 O -0.493 6.493 21 C 0.084 3.916 22 O -0.493 6.493 23 C -0.106 4.106 24 C -0.097 4.097 25 H 0.257 0.743 26 H 0.017 0.983 27 H 0.038 0.962 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.026 0.974 32 H 0.331 0.669 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.388 0.612 39 H 0.390 0.610 40 H 0.038 0.962 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.686 -14.184 -12.075 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.034 3.966 10 C -0.140 4.140 11 C -0.156 4.156 12 C -0.015 4.015 13 N -0.293 5.293 14 C -0.028 4.028 15 C -0.083 4.083 16 C -0.110 4.110 17 C -0.130 4.130 18 C -0.155 4.155 19 C 0.031 3.969 20 O -0.303 6.303 21 C 0.038 3.962 22 O -0.303 6.303 23 C -0.144 4.144 24 C -0.135 4.135 25 H 0.067 0.933 26 H 0.035 0.965 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.149 0.851 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.243 0.757 39 H 0.246 0.754 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.099 0.901 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.244 -13.342 -12.251 18.252 hybrid contribution 0.705 -0.106 0.244 0.754 sum 2.949 -13.449 -12.007 18.268 Atomic orbital electron populations 1.69885 1.05774 1.26082 1.51366 1.24934 0.94780 0.98762 0.95465 0.86765 0.79665 0.83676 0.78473 1.20417 1.21463 1.20501 1.21204 0.92712 0.90940 1.49689 0.93127 1.18596 0.92566 0.91230 0.94217 1.21539 0.98648 0.93923 0.99858 1.21747 0.98255 0.98865 0.96732 1.21543 0.94191 0.96844 0.88887 1.60549 1.05195 1.59392 1.04159 1.20833 0.96352 0.97243 0.88416 1.20132 0.96702 0.94296 0.97154 1.21081 0.99973 0.96892 0.93023 1.21070 0.94846 0.98899 0.98197 1.21325 0.98447 0.96611 0.99120 1.18793 0.88783 0.93998 0.95313 1.84810 1.32902 1.33033 1.79553 1.18690 0.94784 0.91219 0.91486 1.84740 1.69935 1.37837 1.37750 1.21615 0.96457 0.97103 0.99193 1.21428 0.99194 0.93683 0.99206 0.93267 0.96489 0.94285 0.92604 0.92069 0.94015 0.95579 0.85142 0.90005 0.94250 0.84936 0.85296 0.85289 0.75695 0.75389 0.94355 0.93174 0.90077 0.93352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 11.32 55.43 0.63 -25.15 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.14 8.56 -34.44 -0.29 -14.43 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.30 2.10 -91.77 -0.19 1.11 16 10 C -0.10 -2.11 4.98 -26.73 -0.13 -2.24 16 11 C -0.12 -2.00 5.30 -26.73 -0.14 -2.14 16 12 C 0.09 1.55 2.82 -67.71 -0.19 1.36 16 13 N -0.66 -10.11 4.81 -107.98 -0.52 -10.63 16 14 C 0.10 1.36 5.27 -4.98 -0.03 1.33 16 15 C -0.08 -1.06 5.40 -104.50 -0.56 -1.63 16 16 C -0.09 -1.12 9.66 -39.58 -0.38 -1.50 16 17 C -0.11 -1.21 10.04 -39.57 -0.40 -1.61 16 18 C -0.14 -1.47 9.98 -39.46 -0.39 -1.86 16 19 C 0.08 0.90 6.72 -39.12 -0.26 0.64 16 20 O -0.49 -5.27 13.29 -34.20 -0.45 -5.73 16 21 C 0.08 1.06 6.69 -39.12 -0.26 0.79 16 22 O -0.49 -5.77 12.46 -34.21 -0.43 -6.20 16 23 C -0.11 -2.03 5.53 -26.73 -0.15 -2.17 16 24 C -0.10 -2.28 4.82 -26.73 -0.13 -2.41 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.16 7.48 -51.93 -0.39 0.78 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 31 H 0.03 0.40 7.80 -51.93 -0.40 -0.01 16 32 H 0.33 4.71 7.84 -39.29 -0.31 4.40 16 33 H 0.08 1.13 7.30 -51.93 -0.38 0.75 16 34 H 0.04 0.53 7.76 -51.93 -0.40 0.12 16 35 H 0.13 1.54 8.03 -52.49 -0.42 1.12 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.39 2.42 9.06 45.56 0.41 2.83 16 39 H 0.39 3.48 8.79 45.56 0.40 3.88 16 40 H 0.04 0.69 7.45 -51.93 -0.39 0.30 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 43 H 0.05 1.18 7.60 -51.93 -0.39 0.78 16 LS Contribution 344.00 15.07 5.18 5.18 Total: -1.00 -31.25 344.00 -9.31 -40.56 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -5.09 Total: 8.44 kcal Atomic # 6 Polarization: -19.54 SS G_CDS: -3.61 Total: -23.15 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.11 Total: -35.78 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: -0.88 Total: -11.93 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.25 -9.31 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.756 kcal (2) G-P(sol) polarization free energy of solvation -31.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds