Wall clock time and date at job start Tue Mar 31 2020 08:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00145 * 2 1 4 4 H 1.48502 * 109.47594 * 240.00364 * 3 2 1 5 5 H 1.48499 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46948 * 120.00185 * 3 2 1 7 7 C 1.37876 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00395 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99947 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47327 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47105 * 60.00248 * 11 10 9 13 13 N 1.46902 * 109.46986 * 59.99672 * 12 11 10 14 14 C 1.46900 * 110.99721 * 154.99921 * 13 12 11 15 15 C 1.50701 * 109.47026 * 179.97438 * 14 13 12 16 16 C 1.38283 * 120.00461 * 259.98017 * 15 14 13 17 17 C 1.38205 * 120.14926 * 180.02562 * 16 15 14 18 18 C 1.38291 * 120.14649 * 0.02562 * 17 16 15 19 19 C 1.38527 * 119.99574 * 359.97438 * 18 17 16 20 20 O 1.35994 * 120.07075 * 180.27982 * 19 18 17 21 21 C 1.38522 * 119.99573 * 80.00483 * 15 14 13 22 22 O 1.35995 * 120.07525 * 359.95620 * 21 15 14 23 23 C 1.53000 * 109.46936 * 299.99857 * 12 11 10 24 24 C 1.52995 * 109.47107 * 60.00144 * 23 12 11 25 25 H 0.96997 * 119.99511 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47156 * 300.00693 * 9 7 2 27 27 H 1.09006 * 109.46862 * 59.99920 * 10 9 7 28 28 H 1.09000 * 109.46904 * 300.00300 * 10 9 7 29 29 H 1.08990 * 109.47571 * 300.00008 * 11 10 9 30 30 H 1.09002 * 109.46774 * 179.97438 * 11 10 9 31 31 H 1.09002 * 109.47109 * 179.97438 * 12 11 10 32 32 H 1.00901 * 110.99890 * 31.04840 * 13 12 11 33 33 H 1.09001 * 109.47309 * 60.00211 * 14 13 12 34 34 H 1.09002 * 109.47655 * 300.00003 * 14 13 12 35 35 H 1.08001 * 119.92659 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.93073 * 180.02562 * 17 16 15 37 37 H 1.07998 * 120.00254 * 180.02562 * 18 17 16 38 38 H 0.96696 * 114.00006 * 269.72644 * 20 19 18 39 39 H 0.96706 * 113.99739 * 270.01781 * 22 21 15 40 40 H 1.08999 * 109.47063 * 179.97438 * 23 12 11 41 41 H 1.09000 * 109.46904 * 299.99715 * 23 12 11 42 42 H 1.08999 * 109.47036 * 179.97438 * 24 23 12 43 43 H 1.09000 * 109.47589 * 59.99990 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 0.0001 12 6 0.6002 -5.0685 -1.2489 13 7 1.4444 -4.9910 -2.4486 14 6 0.7893 -5.6337 -3.5956 15 6 1.6828 -5.5341 -4.8051 16 6 1.4468 -4.5632 -5.7611 17 6 2.2640 -4.4694 -6.8717 18 6 3.3211 -5.3465 -7.0321 19 6 3.5630 -6.3214 -6.0782 20 8 4.6056 -7.1811 -6.2316 21 6 2.7403 -6.4154 -4.9594 22 8 2.9740 -7.3706 -4.0199 23 6 -0.3940 -3.9055 -1.2489 24 6 0.3710 -2.5806 -1.2495 25 1 -0.4849 0.8401 0.0004 26 1 0.6246 -2.5571 0.8896 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6044 -0.8905 29 1 0.8538 -5.0446 0.8902 30 1 2.1885 -5.8156 -0.0003 31 1 0.0554 -6.0127 -1.2487 32 1 2.3530 -5.3951 -2.2780 33 1 -0.1569 -5.1331 -3.8012 34 1 0.6028 -6.6830 -3.3667 35 1 0.6215 -3.8772 -5.6400 36 1 2.0767 -3.7096 -7.6159 37 1 3.9585 -5.2709 -7.9007 38 1 4.3807 -7.9906 -6.7103 39 1 3.5699 -7.0888 -3.3124 40 1 -1.0207 -3.9632 -2.1389 41 1 -1.0204 -3.9631 -0.3587 42 1 -0.3373 -1.7521 -1.2500 43 1 0.9974 -2.5230 -2.1397 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328782.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:54 Heat of formation + Delta-G solvation = -97.853298 kcal Electronic energy + Delta-G solvation = -23698.085709 eV Core-core repulsion = 20320.686511 eV Total energy + Delta-G solvation = -3377.399198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25197 -39.76255 -38.02068 -37.49266 -35.95338 -34.17770 -31.92826 -31.30546 -30.09925 -29.84356 -26.69156 -25.66916 -23.49847 -23.18759 -22.33862 -22.20906 -19.76300 -19.32496 -18.97046 -18.32576 -17.27659 -16.82807 -16.57638 -16.52876 -16.03391 -15.89244 -15.57429 -14.88022 -14.82251 -14.39003 -14.23468 -13.90059 -13.46746 -13.28395 -13.20774 -13.00520 -12.92034 -12.82961 -12.67611 -12.47672 -12.33144 -12.16991 -11.87314 -11.76303 -11.56143 -11.13424 -11.03634 -10.65383 -10.36713 -10.22975 -9.72186 -9.48360 -9.12279 -8.00285 -6.13423 0.20784 0.24512 1.41957 1.43201 1.50524 2.47259 2.50225 3.13831 3.25120 3.32863 3.49286 3.81571 4.00072 4.08459 4.17569 4.32780 4.33718 4.40583 4.61060 4.63842 4.71431 4.83193 4.89024 4.93687 4.95948 4.97403 5.04110 5.17183 5.22546 5.31105 5.36440 5.40845 5.53738 5.58334 5.66075 5.73003 5.77976 5.87499 6.19331 6.23436 6.34414 6.52446 6.55748 6.66033 6.88813 7.00309 7.53369 9.02641 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017298 B = 0.004175 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.255880 B = 6704.379014 C = 7361.219463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.531 4.531 8 H 0.045 0.955 9 C 0.048 3.952 10 C -0.093 4.093 11 C -0.112 4.112 12 C 0.103 3.897 13 N -0.673 5.673 14 C 0.108 3.892 15 C -0.096 4.096 16 C -0.107 4.107 17 C -0.112 4.112 18 C -0.137 4.137 19 C 0.070 3.930 20 O -0.502 6.502 21 C 0.074 3.926 22 O -0.498 6.498 23 C -0.100 4.100 24 C -0.082 4.082 25 H 0.257 0.743 26 H -0.017 1.017 27 H 0.034 0.966 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.339 0.661 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.406 0.594 39 H 0.401 0.599 40 H 0.049 0.951 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -15.335 -13.143 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.064 0.936 9 C 0.030 3.970 10 C -0.130 4.130 11 C -0.149 4.149 12 C -0.006 4.006 13 N -0.306 5.306 14 C -0.020 4.020 15 C -0.097 4.097 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.155 4.155 19 C 0.025 3.975 20 O -0.314 6.314 21 C 0.029 3.971 22 O -0.310 6.310 23 C -0.139 4.139 24 C -0.120 4.120 25 H 0.066 0.934 26 H 0.001 0.999 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.265 0.735 39 H 0.258 0.742 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.340 -14.517 -13.322 19.984 hybrid contribution 0.397 0.249 0.549 0.722 sum 3.737 -14.268 -12.772 19.511 Atomic orbital electron populations 1.70036 1.07030 1.26711 1.51875 1.25681 0.95605 1.02047 0.95204 0.85796 0.78528 0.79751 0.78659 1.19897 1.21000 1.19842 1.21618 0.92772 0.92719 1.49771 0.93627 1.18589 0.93096 0.92118 0.93222 1.21360 0.97781 0.94391 0.99508 1.21686 0.98610 0.97619 0.97018 1.21371 0.93720 0.96310 0.89210 1.60431 1.05594 1.60401 1.04149 1.20745 0.96083 0.97164 0.88028 1.20135 0.97211 0.95126 0.97254 1.21235 1.00579 0.97044 0.93754 1.21340 0.94331 0.99209 0.98072 1.21599 0.98488 0.95954 0.99507 1.18937 0.88778 0.94495 0.95329 1.84759 1.32704 1.33959 1.80022 1.18780 0.94973 0.91347 0.92033 1.84707 1.70360 1.37819 1.38082 1.21511 0.96888 0.96008 0.99443 1.21128 0.98149 0.94907 0.97853 0.93374 0.99862 0.94707 0.92797 0.92220 0.90572 0.93113 0.84217 0.90640 0.93685 0.85039 0.83074 0.83204 0.73531 0.74163 0.93237 0.93813 0.93983 0.94587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.46 11.32 21.45 0.24 -54.21 16 2 C 0.01 0.72 5.30 84.65 0.45 1.17 16 3 Si 0.95 44.95 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.53 -30.22 8.56 25.60 0.22 -30.00 16 8 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 9 C 0.05 2.45 2.10 -11.54 -0.02 2.43 16 10 C -0.09 -3.79 4.98 30.59 0.15 -3.64 16 11 C -0.11 -3.56 5.30 30.59 0.16 -3.40 16 12 C 0.10 3.19 2.82 44.92 0.13 3.31 16 13 N -0.67 -19.49 4.81 -495.55 -2.39 -21.88 16 14 C 0.11 2.77 5.27 85.56 0.45 3.22 16 15 C -0.10 -2.38 5.40 -19.79 -0.11 -2.49 16 16 C -0.11 -2.53 9.66 22.27 0.22 -2.31 16 17 C -0.11 -2.21 10.04 22.27 0.22 -1.98 16 18 C -0.14 -2.65 9.98 22.35 0.22 -2.43 16 19 C 0.07 1.52 6.72 22.57 0.15 1.67 16 20 O -0.50 -9.65 13.29 -79.64 -1.06 -10.71 16 21 C 0.07 1.75 6.69 22.57 0.15 1.90 16 22 O -0.50 -10.72 12.46 -79.65 -0.99 -11.71 16 23 C -0.10 -3.82 5.53 30.59 0.17 -3.65 16 24 C -0.08 -3.96 4.82 30.59 0.15 -3.81 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 27 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.05 2.21 7.48 -2.39 -0.02 2.19 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 31 H 0.05 1.38 7.80 -2.39 -0.02 1.36 16 32 H 0.34 8.91 7.84 -89.69 -0.70 8.21 16 33 H 0.08 2.00 7.30 -2.39 -0.02 1.98 16 34 H 0.05 1.10 7.76 -2.39 -0.02 1.09 16 35 H 0.13 3.01 8.03 -2.91 -0.02 2.99 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 37 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.41 4.18 9.06 -74.06 -0.67 3.51 16 39 H 0.40 6.36 8.79 -74.05 -0.65 5.71 16 40 H 0.05 1.75 7.45 -2.39 -0.02 1.74 16 41 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.04 2.34 6.07 -2.39 -0.01 2.32 16 43 H 0.04 1.78 7.60 -2.39 -0.02 1.76 16 Total: -1.00 -67.94 344.00 -0.45 -68.39 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: -0.99 Total: 23.16 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 2.71 Total: -40.01 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.14 Total: -76.09 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -2.05 Total: -22.42 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.94 -0.45 -68.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328782.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.467 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds