Wall clock time and date at job start Tue Mar 31 2020 08:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99766 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99913 * 3 2 1 7 7 C 1.37879 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99398 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46931 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47233 * 300.00761 * 10 9 7 12 12 C 1.52997 * 109.47060 * 299.99657 * 11 10 9 13 13 N 1.46894 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.46903 * 111.00270 * 154.99879 * 13 12 11 15 15 C 1.50699 * 109.47109 * 180.02562 * 14 13 12 16 16 C 1.38199 * 119.97347 * 259.72557 * 15 14 13 17 17 C 1.38157 * 120.10657 * 179.72200 * 16 15 14 18 18 C 1.38791 * 120.05656 * 0.55620 * 17 16 15 19 19 O 1.35896 * 120.02816 * 179.69641 * 18 17 16 20 20 C 1.38614 * 119.94612 * 359.72081 * 18 17 16 21 21 C 1.38658 * 119.88715 * 0.02562 * 20 18 17 22 22 O 1.35898 * 120.02441 * 180.02562 * 21 20 18 23 23 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 24 24 C 1.52997 * 109.46907 * 60.00559 * 9 7 2 25 25 H 0.96996 * 119.99730 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47221 * 300.00542 * 9 7 2 27 27 H 1.08992 * 109.47063 * 180.02562 * 10 9 7 28 28 H 1.09004 * 109.46733 * 60.00104 * 10 9 7 29 29 H 1.09002 * 109.47398 * 59.99826 * 11 10 9 30 30 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.00901 * 111.00047 * 278.95651 * 13 12 11 33 33 H 1.09000 * 109.47021 * 300.00052 * 14 13 12 34 34 H 1.08998 * 109.47037 * 60.00492 * 14 13 12 35 35 H 1.07998 * 119.94315 * 0.02562 * 16 15 14 36 36 H 1.07997 * 119.97100 * 180.24867 * 17 16 15 37 37 H 0.96700 * 114.00516 * 270.02097 * 19 18 17 38 38 H 1.08001 * 120.05510 * 180.02562 * 20 18 17 39 39 H 0.96697 * 114.00630 * 269.97924 * 22 21 20 40 40 H 1.09000 * 109.47486 * 180.02562 * 23 12 11 41 41 H 1.09002 * 109.46716 * 60.00091 * 23 12 11 42 42 H 1.09002 * 109.47153 * 179.97438 * 24 9 7 43 43 H 1.09001 * 109.47289 * 299.99763 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 3.1240 -3.5815 -1.2484 12 6 2.2436 -3.6631 -2.4970 13 7 3.0873 -3.5864 -3.6970 14 6 2.4316 -4.2293 -4.8436 15 6 3.3252 -4.1315 -6.0531 16 6 3.0866 -3.1649 -7.0115 17 6 3.9076 -3.0690 -8.1186 18 6 4.9674 -3.9512 -8.2765 19 8 5.7708 -3.8603 -9.3688 20 6 5.2053 -4.9253 -7.3195 21 6 4.3831 -5.0161 -6.2067 22 8 4.6142 -5.9697 -5.2665 23 6 1.2493 -2.5003 -2.4968 24 6 0.3710 -2.5810 -1.2472 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5562 0.8919 27 1 1.7003 -4.6060 0.0018 28 1 2.8726 -3.6039 0.8910 29 1 3.6691 -2.6376 -1.2492 30 1 3.8321 -4.4103 -1.2488 31 1 1.6986 -4.6071 -2.4962 32 1 3.3292 -2.6299 -3.9084 33 1 2.2449 -5.2784 -4.6141 34 1 1.4856 -3.7284 -5.0490 35 1 2.2600 -2.4801 -6.8924 36 1 3.7215 -2.3102 -8.8642 37 1 5.4742 -4.3913 -10.1206 38 1 6.0298 -5.6124 -7.4405 39 1 4.1525 -6.8034 -5.4300 40 1 0.6217 -2.5586 -3.3861 41 1 1.7943 -1.5563 -2.4976 42 1 -0.1737 -3.5251 -1.2466 43 1 -0.3373 -1.7525 -1.2476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:30 Heat of formation + Delta-G solvation = -77.162375 kcal Electronic energy + Delta-G solvation = -23357.229818 eV Core-core repulsion = 19980.727846 eV Total energy + Delta-G solvation = -3376.501972 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28440 -38.30802 -37.86038 -36.07222 -34.64039 -32.21278 -30.66599 -29.99382 -29.45438 -27.68564 -25.05791 -24.00312 -22.91943 -21.57430 -21.25831 -20.56715 -19.18638 -18.70107 -17.22325 -16.50971 -16.24967 -15.71629 -15.53008 -14.83660 -14.56097 -14.42988 -14.01926 -13.78265 -13.64336 -13.14299 -12.90022 -12.69538 -12.54388 -12.18774 -11.78455 -11.50153 -11.29707 -11.18272 -10.96225 -10.88733 -10.85246 -10.58934 -10.50361 -10.28030 -10.01822 -9.62746 -9.16920 -8.99920 -8.93307 -8.64828 -8.56429 -8.25972 -7.74916 -5.93111 -3.96904 0.98394 1.09147 3.27999 3.31123 3.40030 3.44478 3.84265 4.25984 4.47841 4.59732 4.74393 4.89113 4.94792 5.25690 5.37369 5.47109 5.53982 5.64862 5.74242 5.82433 5.89103 6.06983 6.13212 6.18599 6.36949 6.40276 6.49136 6.51392 6.53051 6.58996 6.80959 6.83436 6.94814 7.17525 7.24933 7.36146 7.37250 7.53744 7.60346 7.66569 7.78465 7.85367 7.99417 8.20161 8.54357 9.06362 9.66243 11.12698 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020095 B = 0.003706 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.080143 B = 7553.477899 C = 8241.943882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.882 3.118 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.497 4.497 8 H 0.056 0.944 9 C 0.043 3.957 10 C -0.107 4.107 11 C -0.091 4.091 12 C 0.095 3.905 13 N -0.676 5.676 14 C 0.106 3.894 15 C -0.112 4.112 16 C -0.082 4.082 17 C -0.156 4.156 18 C 0.115 3.885 19 O -0.499 6.499 20 C -0.177 4.177 21 C 0.147 3.853 22 O -0.481 6.481 23 C -0.127 4.127 24 C -0.104 4.104 25 H 0.257 0.743 26 H 0.023 0.977 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.339 0.661 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.389 0.611 38 H 0.132 0.868 39 H 0.386 0.614 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.012 0.988 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.782 -11.141 -17.031 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.145 4.145 11 C -0.129 4.129 12 C -0.014 4.014 13 N -0.306 5.306 14 C -0.023 4.023 15 C -0.113 4.113 16 C -0.101 4.101 17 C -0.174 4.174 18 C 0.070 3.930 19 O -0.309 6.309 20 C -0.196 4.196 21 C 0.101 3.899 22 O -0.290 6.290 23 C -0.166 4.166 24 C -0.142 4.142 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.157 0.843 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.244 0.756 38 H 0.150 0.850 39 H 0.241 0.759 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.031 0.969 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.693 -10.778 -16.241 20.306 hybrid contribution -0.763 1.026 -0.819 1.519 sum 4.930 -9.751 -17.061 20.260 Atomic orbital electron populations 1.69883 1.05821 1.25951 1.51580 1.24942 0.94744 0.98783 0.95597 0.86682 0.80352 0.84419 0.77460 1.19788 1.21257 1.21199 1.21226 0.92837 0.90422 1.49089 0.92565 1.18698 0.92723 0.92243 0.93912 1.21561 0.98271 0.98360 0.96319 1.21326 0.97162 1.01253 0.93128 1.21589 0.92584 0.97853 0.89332 1.60698 1.44336 1.22739 1.02787 1.20680 0.93294 1.00254 0.88051 1.20347 0.96953 0.97137 0.96887 1.20920 0.99173 0.97074 0.92952 1.21383 0.95337 1.00766 0.99952 1.18230 0.90796 0.95013 0.88946 1.84841 1.51007 1.71570 1.23437 1.21672 1.01980 1.00905 0.95066 1.18030 0.92821 0.91617 0.87405 1.84937 1.72364 1.24811 1.46879 1.22026 0.97837 0.99059 0.97629 1.21440 0.98663 0.99188 0.94938 0.93323 0.95912 0.94997 0.93511 0.91364 0.93880 0.92165 0.84317 0.90691 0.94552 0.85145 0.85306 0.75560 0.84994 0.75878 0.95486 0.90980 0.96932 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 11.32 55.43 0.63 -24.62 16 2 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 3 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.50 -13.25 6.61 -34.44 -0.23 -13.48 16 8 H 0.06 1.51 6.71 -52.49 -0.35 1.16 16 9 C 0.04 1.05 2.59 -91.77 -0.24 0.81 16 10 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 11 C -0.09 -1.78 5.30 -26.73 -0.14 -1.92 16 12 C 0.10 1.73 2.47 -67.72 -0.17 1.56 16 13 N -0.68 -10.93 6.24 -108.00 -0.67 -11.60 16 14 C 0.11 1.42 5.27 -4.97 -0.03 1.40 16 15 C -0.11 -1.38 5.41 -104.45 -0.56 -1.95 16 16 C -0.08 -0.92 9.66 -39.63 -0.38 -1.30 16 17 C -0.16 -1.63 9.98 -39.41 -0.39 -2.02 16 18 C 0.11 1.23 6.70 -39.24 -0.26 0.96 16 19 O -0.50 -4.60 13.50 -19.41 -0.26 -4.86 16 20 C -0.18 -1.96 9.93 -39.29 -0.39 -2.35 16 21 C 0.15 1.77 6.67 -39.24 -0.26 1.50 16 22 O -0.48 -5.60 12.73 -19.42 -0.25 -5.85 16 23 C -0.13 -2.58 4.95 -26.76 -0.13 -2.71 16 24 C -0.10 -2.40 5.23 -26.76 -0.14 -2.54 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.47 6.62 -51.93 -0.34 1.12 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.07 7.80 -51.93 -0.40 0.67 16 32 H 0.34 5.67 8.47 -39.29 -0.33 5.34 16 33 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 34 H 0.04 0.48 7.29 -51.93 -0.38 0.11 16 35 H 0.13 1.31 8.03 -52.49 -0.42 0.88 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.39 1.52 9.06 45.56 0.41 1.93 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.39 2.55 9.06 45.56 0.41 2.96 16 40 H 0.03 0.51 7.46 -51.93 -0.39 0.12 16 41 H 0.07 1.64 7.20 -51.93 -0.37 1.27 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -31.10 342.80 -8.96 -40.06 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.98 Total: 8.36 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -3.57 Total: -22.91 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.05 Total: -36.22 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.51 Total: -10.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.10 -8.96 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.104 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds