Wall clock time and date at job start Tue Mar 31 2020 08:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.47057 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47216 * 299.99766 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99913 * 3 2 1 7 7 C 1.37879 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00409 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99398 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46931 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47233 * 300.00761 * 10 9 7 12 12 C 1.52997 * 109.47060 * 299.99657 * 11 10 9 13 13 N 1.46894 * 109.47515 * 180.02562 * 12 11 10 14 14 C 1.46903 * 111.00270 * 154.99879 * 13 12 11 15 15 C 1.50699 * 109.47109 * 180.02562 * 14 13 12 16 16 C 1.38199 * 119.97347 * 259.72557 * 15 14 13 17 17 C 1.38157 * 120.10657 * 179.72200 * 16 15 14 18 18 C 1.38791 * 120.05656 * 0.55620 * 17 16 15 19 19 O 1.35896 * 120.02816 * 179.69641 * 18 17 16 20 20 C 1.38614 * 119.94612 * 359.72081 * 18 17 16 21 21 C 1.38658 * 119.88715 * 0.02562 * 20 18 17 22 22 O 1.35898 * 120.02441 * 180.02562 * 21 20 18 23 23 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 24 24 C 1.52997 * 109.46907 * 60.00559 * 9 7 2 25 25 H 0.96996 * 119.99730 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47221 * 300.00542 * 9 7 2 27 27 H 1.08992 * 109.47063 * 180.02562 * 10 9 7 28 28 H 1.09004 * 109.46733 * 60.00104 * 10 9 7 29 29 H 1.09002 * 109.47398 * 59.99826 * 11 10 9 30 30 H 1.09001 * 109.47194 * 180.02562 * 11 10 9 31 31 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 32 32 H 1.00901 * 111.00047 * 278.95651 * 13 12 11 33 33 H 1.09000 * 109.47021 * 300.00052 * 14 13 12 34 34 H 1.08998 * 109.47037 * 60.00492 * 14 13 12 35 35 H 1.07998 * 119.94315 * 0.02562 * 16 15 14 36 36 H 1.07997 * 119.97100 * 180.24867 * 17 16 15 37 37 H 0.96700 * 114.00516 * 270.02097 * 19 18 17 38 38 H 1.08001 * 120.05510 * 180.02562 * 20 18 17 39 39 H 0.96697 * 114.00630 * 269.97924 * 22 21 20 40 40 H 1.09000 * 109.47486 * 180.02562 * 23 12 11 41 41 H 1.09002 * 109.46716 * 60.00091 * 23 12 11 42 42 H 1.09002 * 109.47153 * 179.97438 * 24 9 7 43 43 H 1.09001 * 109.47289 * 299.99763 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 3.1240 -3.5815 -1.2484 12 6 2.2436 -3.6631 -2.4970 13 7 3.0873 -3.5864 -3.6970 14 6 2.4316 -4.2293 -4.8436 15 6 3.3252 -4.1315 -6.0531 16 6 3.0866 -3.1649 -7.0115 17 6 3.9076 -3.0690 -8.1186 18 6 4.9674 -3.9512 -8.2765 19 8 5.7708 -3.8603 -9.3688 20 6 5.2053 -4.9253 -7.3195 21 6 4.3831 -5.0161 -6.2067 22 8 4.6142 -5.9697 -5.2665 23 6 1.2493 -2.5003 -2.4968 24 6 0.3710 -2.5810 -1.2472 25 1 -0.4849 0.8400 -0.0004 26 1 0.6247 -2.5562 0.8919 27 1 1.7003 -4.6060 0.0018 28 1 2.8726 -3.6039 0.8910 29 1 3.6691 -2.6376 -1.2492 30 1 3.8321 -4.4103 -1.2488 31 1 1.6986 -4.6071 -2.4962 32 1 3.3292 -2.6299 -3.9084 33 1 2.2449 -5.2784 -4.6141 34 1 1.4856 -3.7284 -5.0490 35 1 2.2600 -2.4801 -6.8924 36 1 3.7215 -2.3102 -8.8642 37 1 5.4742 -4.3913 -10.1206 38 1 6.0298 -5.6124 -7.4405 39 1 4.1525 -6.8034 -5.4300 40 1 0.6217 -2.5586 -3.3861 41 1 1.7943 -1.5563 -2.4976 42 1 -0.1737 -3.5251 -1.2466 43 1 -0.3373 -1.7525 -1.2476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:22 Heat of formation + Delta-G solvation = -99.871224 kcal Electronic energy + Delta-G solvation = -23358.214547 eV Core-core repulsion = 19980.727846 eV Total energy + Delta-G solvation = -3377.486702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 5.60 seconds Orbital eigenvalues (eV) -41.11527 -39.77625 -38.76586 -37.00132 -35.99579 -34.04482 -31.82331 -31.20051 -30.90562 -29.11453 -26.79828 -25.32870 -23.74394 -23.12320 -22.33210 -22.13507 -20.52702 -19.94815 -18.02765 -17.87878 -17.29995 -17.06209 -16.64033 -16.47115 -15.94492 -15.70877 -15.21785 -14.98136 -14.79998 -14.57805 -14.48394 -13.90591 -13.65371 -13.55585 -13.16019 -12.98320 -12.88291 -12.65659 -12.57193 -12.44069 -12.33934 -12.14392 -11.73082 -11.62435 -11.49506 -11.43305 -10.93472 -10.70881 -10.56651 -10.31972 -9.82164 -9.42220 -9.10255 -8.02465 -6.12029 0.16694 0.28625 1.38037 1.41991 1.51719 2.45713 2.49460 3.09335 3.25446 3.44510 3.54016 3.89097 3.92592 4.07549 4.14395 4.26569 4.38832 4.52779 4.58673 4.67849 4.73855 4.79970 4.88045 4.89955 4.94471 4.97027 5.03605 5.16485 5.24843 5.28410 5.38972 5.47504 5.52966 5.58727 5.64414 5.66641 5.75802 5.76301 5.98045 6.24947 6.27510 6.47263 6.53472 6.83166 6.94595 6.98245 7.53705 9.02150 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.020095 B = 0.003706 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.080143 B = 7553.477899 C = 8241.943882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.014 3.986 3 Si 0.939 3.061 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.503 4.503 8 H 0.051 0.949 9 C 0.038 3.962 10 C -0.101 4.101 11 C -0.084 4.084 12 C 0.108 3.892 13 N -0.677 5.677 14 C 0.109 3.891 15 C -0.129 4.129 16 C -0.085 4.085 17 C -0.161 4.161 18 C 0.119 3.881 19 O -0.508 6.508 20 C -0.187 4.187 21 C 0.143 3.857 22 O -0.497 6.497 23 C -0.115 4.115 24 C -0.100 4.100 25 H 0.256 0.744 26 H -0.013 1.013 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.335 0.665 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.412 0.588 38 H 0.141 0.859 39 H 0.405 0.595 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.027 0.973 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 -11.970 -18.745 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.019 3.981 10 C -0.139 4.139 11 C -0.122 4.122 12 C -0.001 4.001 13 N -0.306 5.306 14 C -0.019 4.019 15 C -0.130 4.130 16 C -0.103 4.103 17 C -0.180 4.180 18 C 0.074 3.926 19 O -0.322 6.322 20 C -0.206 4.206 21 C 0.097 3.903 22 O -0.309 6.309 23 C -0.154 4.154 24 C -0.138 4.138 25 H 0.065 0.935 26 H 0.006 0.994 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.272 0.728 38 H 0.159 0.841 39 H 0.264 0.736 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.674 -11.639 -17.982 22.435 hybrid contribution -1.054 1.233 -0.333 1.656 sum 5.619 -10.406 -18.315 21.801 Atomic orbital electron populations 1.70018 1.06973 1.26480 1.52504 1.25592 0.95437 1.01695 0.95614 0.85789 0.79319 0.80942 0.77344 1.19386 1.20930 1.21096 1.21449 0.92670 0.91573 1.48443 0.93106 1.18699 0.93176 0.93104 0.93111 1.21465 0.97716 0.97588 0.97146 1.21237 0.97148 1.00632 0.93185 1.21368 0.91863 0.97096 0.89779 1.60676 1.44072 1.22570 1.03241 1.20691 0.93387 1.00343 0.87491 1.20281 0.97519 0.98241 0.96971 1.21065 0.99511 0.96842 0.92922 1.21575 0.95171 1.01131 1.00109 1.18326 0.90486 0.94506 0.89249 1.84778 1.51071 1.72325 1.23985 1.21795 1.02262 1.01465 0.95047 1.18127 0.92826 0.91712 0.87601 1.84872 1.72986 1.25923 1.47156 1.21880 0.97842 0.98895 0.96775 1.21301 0.98329 0.98518 0.95682 0.93453 0.99442 0.93055 0.93802 0.93610 0.92271 0.90905 0.84800 0.89835 0.94382 0.84361 0.83700 0.72801 0.84122 0.73580 0.93888 0.93730 0.95413 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 2 C 0.01 0.79 5.30 84.66 0.45 1.24 16 3 Si 0.94 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 6 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 7 C -0.50 -27.22 6.61 25.60 0.17 -27.05 16 8 H 0.05 2.76 6.71 -2.91 -0.02 2.74 16 9 C 0.04 1.87 2.59 -11.54 -0.03 1.84 16 10 C -0.10 -4.17 5.41 30.60 0.17 -4.00 16 11 C -0.08 -3.19 5.30 30.59 0.16 -3.03 16 12 C 0.11 3.74 2.47 44.92 0.11 3.85 16 13 N -0.68 -20.72 6.24 -495.59 -3.09 -23.82 16 14 C 0.11 2.71 5.27 85.56 0.45 3.16 16 15 C -0.13 -2.95 5.41 -19.75 -0.11 -3.06 16 16 C -0.08 -1.74 9.66 22.24 0.21 -1.53 16 17 C -0.16 -3.03 9.98 22.38 0.22 -2.81 16 18 C 0.12 2.29 6.70 22.49 0.15 2.44 16 19 O -0.51 -8.12 13.50 -92.38 -1.25 -9.36 16 20 C -0.19 -3.78 9.93 22.46 0.22 -3.55 16 21 C 0.14 3.18 6.67 22.49 0.15 3.33 16 22 O -0.50 -10.61 12.73 -92.40 -1.18 -11.79 16 23 C -0.11 -4.61 4.95 30.58 0.15 -4.46 16 24 C -0.10 -4.64 5.23 30.58 0.16 -4.48 16 25 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 26 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 30 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.38 7.80 -2.39 -0.02 2.36 16 32 H 0.33 10.82 8.47 -89.69 -0.76 10.07 16 33 H 0.08 1.92 7.76 -2.39 -0.02 1.90 16 34 H 0.04 0.93 7.29 -2.39 -0.02 0.92 16 35 H 0.14 2.53 8.03 -2.91 -0.02 2.51 16 36 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.41 2.11 9.06 -74.06 -0.67 1.44 16 38 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 39 H 0.41 4.53 9.06 -74.06 -0.67 3.85 16 40 H 0.04 1.57 7.46 -2.39 -0.02 1.55 16 41 H 0.04 2.03 7.20 -2.39 -0.02 2.01 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.05 2.96 6.07 -2.39 -0.01 2.95 16 Total: -1.00 -66.36 342.80 -1.66 -68.02 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -1.06 Total: 21.80 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 2.64 Total: -38.10 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -2.85 Total: -76.70 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -2.42 Total: -21.15 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -66.36 -1.66 -68.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.848 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.60 seconds