Wall clock time and date at job start Tue Mar 31 2020 08:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48503 * 109.46926 * 239.99886 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47297 * 120.00269 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47126 * 59.99803 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99932 * 154.99750 * 13 12 11 15 15 C 1.50699 * 109.46941 * 179.97438 * 14 13 12 16 16 C 1.38261 * 119.92373 * 269.72405 * 15 14 13 17 17 C 1.38244 * 120.14009 * 179.72874 * 16 15 14 18 18 C 1.38559 * 120.00356 * 0.54498 * 17 16 15 19 19 O 1.35995 * 120.07545 * 179.70539 * 18 17 16 20 20 C 1.39156 * 119.85411 * 359.73182 * 18 17 16 21 21 O 1.35991 * 120.07649 * 180.02562 * 20 18 17 22 22 C 1.38237 * 119.92714 * 90.00431 * 15 14 13 23 23 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 24 24 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 25 25 H 0.97000 * 120.00354 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 27 27 H 1.08998 * 109.46505 * 59.99690 * 10 9 7 28 28 H 1.08996 * 109.46884 * 300.00571 * 10 9 7 29 29 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 32 32 H 1.00900 * 111.00162 * 278.95254 * 13 12 11 33 33 H 1.08996 * 109.46904 * 300.00110 * 14 13 12 34 34 H 1.09005 * 109.46776 * 59.99921 * 14 13 12 35 35 H 1.07992 * 119.92885 * 359.97438 * 16 15 14 36 36 H 1.08005 * 119.99613 * 180.25786 * 17 16 15 37 37 H 0.96697 * 113.99848 * 270.02663 * 19 18 17 38 38 H 0.96692 * 114.00366 * 269.98291 * 21 20 18 39 39 H 1.07996 * 120.00152 * 359.97017 * 22 15 14 40 40 H 1.08992 * 109.47554 * 59.99639 * 23 12 11 41 41 H 1.09004 * 109.47108 * 179.97438 * 23 12 11 42 42 H 1.09002 * 109.47045 * 60.00033 * 24 9 7 43 43 H 1.09001 * 109.47375 * 299.99958 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3709 -2.5799 -1.2495 11 6 -0.3936 -3.9052 -1.2498 12 6 0.6011 -5.0678 -1.2507 13 7 -0.1329 -6.3402 -1.2516 14 6 0.6806 -7.4169 -1.8321 15 6 -0.1035 -8.7037 -1.8155 16 6 -0.0188 -9.5489 -0.7246 17 6 -0.7406 -10.7278 -0.7022 18 6 -1.5423 -11.0700 -1.7793 19 8 -2.2482 -12.2322 -1.7613 20 6 -1.6230 -10.2220 -2.8797 21 8 -2.4089 -10.5531 -3.9390 22 6 -0.9014 -9.0391 -2.8934 23 6 1.4812 -4.9870 -0.0018 24 6 2.2453 -3.6620 -0.0018 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 0.8897 27 1 0.9973 -2.5219 -2.1396 28 1 -0.3373 -1.7514 -1.2490 29 1 -1.0203 -3.9630 -2.1398 30 1 -1.0198 -3.9636 -0.3596 31 1 1.2274 -5.0094 -2.1409 32 1 -0.4406 -6.5809 -0.3213 33 1 0.9402 -7.1624 -2.8597 34 1 1.5920 -7.5395 -1.2468 35 1 0.6094 -9.2858 0.1134 36 1 -0.6759 -11.3843 0.1529 37 1 -1.7708 -12.9881 -2.1297 38 1 -1.9550 -11.0690 -4.6194 39 1 -0.9626 -8.3791 -3.7460 40 1 0.8550 -5.0454 0.8884 41 1 2.1895 -5.8155 -0.0022 42 1 2.8727 -3.6047 0.8877 43 1 2.8713 -3.6039 -0.8923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:13 Heat of formation + Delta-G solvation = -82.023220 kcal Electronic energy + Delta-G solvation = -22668.778719 eV Core-core repulsion = 19292.065965 eV Total energy + Delta-G solvation = -3376.712754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -40.43279 -38.39891 -37.19773 -37.07627 -34.66080 -32.41055 -30.77861 -30.03399 -29.64157 -27.99381 -25.22266 -23.72337 -23.06062 -21.73548 -21.41170 -20.54910 -19.06104 -18.79010 -17.83331 -16.55083 -16.32542 -16.24224 -15.39400 -15.01764 -14.77968 -14.54582 -14.05119 -13.93980 -13.60690 -13.13248 -12.92034 -12.68897 -12.61619 -12.27003 -11.99227 -11.97281 -11.58541 -11.49630 -11.23070 -10.96218 -10.68574 -10.52493 -10.41137 -10.37050 -10.18063 -9.79440 -9.36041 -9.07893 -8.93106 -8.80148 -8.63859 -8.26131 -8.03114 -5.94206 -4.00629 0.87289 1.01071 3.24353 3.33324 3.38359 3.40587 3.81470 3.86360 4.43400 4.48004 4.61708 4.76354 5.03545 5.11497 5.28455 5.33805 5.38054 5.46223 5.57707 5.66529 5.69566 5.86639 5.95584 6.05684 6.07707 6.31704 6.37246 6.39161 6.46573 6.49828 6.61302 6.73727 6.78075 6.90545 7.11390 7.14979 7.27367 7.36308 7.52141 7.54079 7.63486 7.79371 8.06292 8.21593 8.51278 9.03376 9.63761 11.11190 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.043111 B = 0.002580 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.328549 B =10850.851592 C =11149.365224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.052 0.948 9 C 0.049 3.951 10 C -0.109 4.109 11 C -0.102 4.102 12 C 0.091 3.909 13 N -0.682 5.682 14 C 0.096 3.904 15 C -0.067 4.067 16 C -0.106 4.106 17 C -0.131 4.131 18 C 0.074 3.926 19 O -0.489 6.489 20 C 0.078 3.922 21 O -0.488 6.488 22 C -0.108 4.108 23 C -0.143 4.143 24 C -0.104 4.104 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.032 0.968 28 H 0.093 0.907 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.339 0.661 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.384 0.616 38 H 0.384 0.616 39 H 0.135 0.865 40 H 0.056 0.944 41 H 0.040 0.960 42 H 0.044 0.956 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -23.066 -5.297 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.070 0.930 9 C 0.030 3.970 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.018 4.018 13 N -0.311 5.311 14 C -0.033 4.033 15 C -0.067 4.067 16 C -0.125 4.125 17 C -0.149 4.149 18 C 0.028 3.972 19 O -0.299 6.299 20 C 0.033 3.967 21 O -0.297 6.297 22 C -0.127 4.127 23 C -0.182 4.182 24 C -0.142 4.142 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.050 0.950 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.157 0.843 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.239 0.761 38 H 0.240 0.760 39 H 0.153 0.847 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.038 -22.143 -5.331 22.800 hybrid contribution 1.768 0.133 0.266 1.793 sum 0.730 -22.010 -5.066 22.597 Atomic orbital electron populations 1.69864 1.05816 1.26391 1.50796 1.24965 0.94832 0.98944 0.95255 0.86720 0.79644 0.83453 0.78515 1.20370 1.21342 1.20405 1.21196 0.92776 0.90855 1.50418 0.92968 1.18651 0.92573 0.91341 0.94389 1.21622 0.99599 0.95028 0.98516 1.21577 0.97165 0.94641 1.00604 1.21696 0.94307 0.88457 0.97334 1.60773 1.40509 1.02058 1.27808 1.20913 0.93460 0.87937 1.01006 1.19827 0.97388 0.95901 0.93617 1.21022 0.99541 0.93852 0.98092 1.21299 0.96548 0.98511 0.98557 1.18802 0.95269 0.88565 0.94518 1.84931 1.42648 1.17244 1.85042 1.18800 0.94433 0.94870 0.88584 1.84941 1.37938 1.75628 1.31205 1.21274 0.95333 0.96084 1.00006 1.22228 0.98812 0.98720 0.98409 1.21555 0.98594 0.94122 0.99954 0.93025 0.95809 0.94960 0.88917 0.93306 0.93023 0.91117 0.84324 0.90177 0.94138 0.85373 0.85050 0.76104 0.76039 0.84693 0.92520 0.94089 0.93671 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.08 8.56 -34.44 -0.29 -14.38 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.20 2.10 -91.77 -0.19 1.00 16 10 C -0.11 -2.54 4.98 -26.73 -0.13 -2.67 16 11 C -0.10 -1.97 5.53 -26.73 -0.15 -2.12 16 12 C 0.09 1.49 2.47 -67.71 -0.17 1.32 16 13 N -0.68 -9.56 6.24 -107.99 -0.67 -10.24 16 14 C 0.10 1.11 5.61 -4.97 -0.03 1.08 16 15 C -0.07 -0.72 5.39 -104.61 -0.56 -1.29 16 16 C -0.11 -1.04 9.69 -39.57 -0.38 -1.42 16 17 C -0.13 -1.24 9.98 -39.46 -0.39 -1.63 16 18 C 0.07 0.76 6.72 -39.12 -0.26 0.50 16 19 O -0.49 -4.54 13.29 -34.23 -0.45 -5.00 16 20 C 0.08 0.85 6.72 -39.12 -0.26 0.58 16 21 O -0.49 -4.86 13.29 -34.21 -0.45 -5.32 16 22 C -0.11 -1.18 9.63 -39.46 -0.38 -1.56 16 23 C -0.14 -2.39 5.17 -26.76 -0.14 -2.52 16 24 C -0.10 -2.12 5.14 -26.76 -0.14 -2.25 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.18 7.80 -51.93 -0.40 0.77 16 32 H 0.34 4.63 8.46 -39.29 -0.33 4.30 16 33 H 0.08 0.91 8.00 -51.93 -0.42 0.49 16 34 H 0.04 0.45 7.38 -51.93 -0.38 0.06 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.38 1.48 9.06 45.56 0.41 1.89 16 38 H 0.38 1.72 9.06 45.56 0.41 2.13 16 39 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 41 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -31.77 348.48 -9.49 -41.25 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.18 Total: 6.34 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: -3.58 Total: -23.76 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: -0.05 Total: -35.07 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -0.91 Total: -10.31 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.77 -9.49 -41.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.768 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds