Wall clock time and date at job start Tue Mar 31 2020 08:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48503 * 109.46926 * 239.99886 * 3 2 1 5 5 H 1.48500 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47297 * 120.00269 * 3 2 1 7 7 C 1.37880 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47126 * 59.99803 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47060 * 300.00449 * 11 10 9 13 13 N 1.46901 * 109.46769 * 180.02562 * 12 11 10 14 14 C 1.46906 * 110.99932 * 154.99750 * 13 12 11 15 15 C 1.50699 * 109.46941 * 179.97438 * 14 13 12 16 16 C 1.38261 * 119.92373 * 269.72405 * 15 14 13 17 17 C 1.38244 * 120.14009 * 179.72874 * 16 15 14 18 18 C 1.38559 * 120.00356 * 0.54498 * 17 16 15 19 19 O 1.35995 * 120.07545 * 179.70539 * 18 17 16 20 20 C 1.39156 * 119.85411 * 359.73182 * 18 17 16 21 21 O 1.35991 * 120.07649 * 180.02562 * 20 18 17 22 22 C 1.38237 * 119.92714 * 90.00431 * 15 14 13 23 23 C 1.52996 * 109.47328 * 60.00126 * 12 11 10 24 24 C 1.52997 * 109.47084 * 179.97438 * 9 7 2 25 25 H 0.97000 * 120.00354 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46980 * 300.00034 * 9 7 2 27 27 H 1.08998 * 109.46505 * 59.99690 * 10 9 7 28 28 H 1.08996 * 109.46884 * 300.00571 * 10 9 7 29 29 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 30 30 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 31 31 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 32 32 H 1.00900 * 111.00162 * 278.95254 * 13 12 11 33 33 H 1.08996 * 109.46904 * 300.00110 * 14 13 12 34 34 H 1.09005 * 109.46776 * 59.99921 * 14 13 12 35 35 H 1.07992 * 119.92885 * 359.97438 * 16 15 14 36 36 H 1.08005 * 119.99613 * 180.25786 * 17 16 15 37 37 H 0.96697 * 113.99848 * 270.02663 * 19 18 17 38 38 H 0.96692 * 114.00366 * 269.98291 * 21 20 18 39 39 H 1.07996 * 120.00152 * 359.97017 * 22 15 14 40 40 H 1.08992 * 109.47554 * 59.99639 * 23 12 11 41 41 H 1.09004 * 109.47108 * 179.97438 * 23 12 11 42 42 H 1.09002 * 109.47045 * 60.00033 * 24 9 7 43 43 H 1.09001 * 109.47375 * 299.99958 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 0.3709 -2.5799 -1.2495 11 6 -0.3936 -3.9052 -1.2498 12 6 0.6011 -5.0678 -1.2507 13 7 -0.1329 -6.3402 -1.2516 14 6 0.6806 -7.4169 -1.8321 15 6 -0.1035 -8.7037 -1.8155 16 6 -0.0188 -9.5489 -0.7246 17 6 -0.7406 -10.7278 -0.7022 18 6 -1.5423 -11.0700 -1.7793 19 8 -2.2482 -12.2322 -1.7613 20 6 -1.6230 -10.2220 -2.8797 21 8 -2.4089 -10.5531 -3.9390 22 6 -0.9014 -9.0391 -2.8934 23 6 1.4812 -4.9870 -0.0018 24 6 2.2453 -3.6620 -0.0018 25 1 -0.4850 0.8400 0.0004 26 1 0.6248 -2.5571 0.8897 27 1 0.9973 -2.5219 -2.1396 28 1 -0.3373 -1.7514 -1.2490 29 1 -1.0203 -3.9630 -2.1398 30 1 -1.0198 -3.9636 -0.3596 31 1 1.2274 -5.0094 -2.1409 32 1 -0.4406 -6.5809 -0.3213 33 1 0.9402 -7.1624 -2.8597 34 1 1.5920 -7.5395 -1.2468 35 1 0.6094 -9.2858 0.1134 36 1 -0.6759 -11.3843 0.1529 37 1 -1.7708 -12.9881 -2.1297 38 1 -1.9550 -11.0690 -4.6194 39 1 -0.9626 -8.3791 -3.7460 40 1 0.8550 -5.0454 0.8884 41 1 2.1895 -5.8155 -0.0022 42 1 2.8727 -3.6047 0.8877 43 1 2.8713 -3.6039 -0.8923 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:10 Heat of formation + Delta-G solvation = -104.725184 kcal Electronic energy + Delta-G solvation = -22669.763150 eV Core-core repulsion = 19292.065965 eV Total energy + Delta-G solvation = -3377.697185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.16512 -39.78105 -38.02381 -37.87087 -36.05603 -34.16233 -31.88077 -31.35194 -30.83234 -29.38493 -26.65908 -25.15917 -23.79399 -23.21930 -22.35718 -22.09821 -20.51141 -19.70780 -18.57699 -18.37457 -17.33935 -17.11133 -16.68938 -16.28716 -15.91602 -15.73918 -15.10400 -15.01733 -14.69357 -14.58458 -14.39644 -14.09170 -13.87611 -13.43695 -13.34818 -12.94167 -12.87753 -12.77036 -12.60778 -12.52657 -12.29268 -12.16197 -12.00481 -11.81313 -11.58944 -11.17050 -11.12781 -10.72420 -10.61139 -10.33728 -9.81162 -9.49986 -9.17374 -8.05226 -6.19575 0.14027 0.27967 1.41688 1.42577 1.50272 2.44489 2.51203 3.12416 3.20596 3.26135 3.41517 3.85560 3.92711 3.97514 4.13842 4.31288 4.33123 4.42545 4.54573 4.62405 4.68658 4.73601 4.89318 4.90629 4.90804 4.99291 5.01612 5.06196 5.22221 5.23624 5.32557 5.33172 5.41829 5.50836 5.58377 5.64894 5.73148 5.78631 6.06440 6.11633 6.28167 6.43855 6.51459 6.64325 6.93971 6.97532 7.48395 8.98198 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.043111 B = 0.002580 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.328549 B =10850.851592 C =11149.365224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.045 3.955 10 C -0.101 4.101 11 C -0.093 4.093 12 C 0.104 3.896 13 N -0.685 5.685 14 C 0.099 3.901 15 C -0.076 4.076 16 C -0.106 4.106 17 C -0.132 4.132 18 C 0.069 3.931 19 O -0.503 6.503 20 C 0.068 3.932 21 O -0.504 6.504 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.098 4.098 25 H 0.259 0.741 26 H -0.010 1.010 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.343 0.657 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.407 0.593 38 H 0.406 0.594 39 H 0.132 0.868 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.380 -24.854 -5.344 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.188 4.188 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.069 0.931 9 C 0.026 3.974 10 C -0.140 4.140 11 C -0.131 4.131 12 C -0.005 4.005 13 N -0.315 5.315 14 C -0.029 4.029 15 C -0.076 4.076 16 C -0.124 4.124 17 C -0.151 4.151 18 C 0.024 3.976 19 O -0.316 6.316 20 C 0.023 3.977 21 O -0.316 6.316 22 C -0.138 4.138 23 C -0.171 4.171 24 C -0.136 4.136 25 H 0.068 0.932 26 H 0.008 0.992 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.265 0.735 38 H 0.264 0.736 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.035 -23.973 -5.398 24.573 hybrid contribution 1.395 0.613 0.256 1.545 sum 1.431 -23.360 -5.141 23.962 Atomic orbital electron populations 1.70021 1.07153 1.27006 1.51481 1.25750 0.95652 1.02350 0.95031 0.85729 0.78457 0.79371 0.78799 1.19625 1.21107 1.19732 1.21626 0.92993 0.92487 1.50283 0.93120 1.18631 0.93081 0.92334 0.93304 1.21403 0.98772 0.96104 0.97673 1.21416 0.97398 0.94098 1.00225 1.21397 0.93256 0.88544 0.97328 1.60640 1.40788 1.01861 1.28230 1.20919 0.93611 0.87301 1.01056 1.19776 0.97796 0.95905 0.94147 1.21220 0.99504 0.93591 0.98107 1.21523 0.96043 0.98681 0.98824 1.18943 0.95170 0.88942 0.94551 1.84863 1.43488 1.17845 1.85357 1.18915 0.94589 0.95076 0.89169 1.84874 1.38752 1.76209 1.31812 1.21338 0.95887 0.96357 1.00254 1.22134 0.99026 0.97530 0.98452 1.21418 0.97803 0.94431 0.99966 0.93180 0.99188 0.95440 0.92635 0.92931 0.94092 0.90780 0.83891 0.90050 0.92774 0.83689 0.83218 0.73475 0.73568 0.84975 0.92767 0.90836 0.93818 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 2 C 0.01 0.59 5.30 84.66 0.45 1.04 16 3 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.54 -29.84 8.56 25.60 0.22 -29.62 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.04 2.25 2.10 -11.54 -0.02 2.23 16 10 C -0.10 -4.82 4.98 30.60 0.15 -4.66 16 11 C -0.09 -3.61 5.53 30.59 0.17 -3.44 16 12 C 0.10 3.24 2.47 44.91 0.11 3.35 16 13 N -0.69 -17.77 6.24 -495.56 -3.09 -20.87 16 14 C 0.10 2.04 5.61 85.56 0.48 2.52 16 15 C -0.08 -1.48 5.39 -19.86 -0.11 -1.58 16 16 C -0.11 -1.78 9.69 22.28 0.22 -1.56 16 17 C -0.13 -2.18 9.98 22.35 0.22 -1.95 16 18 C 0.07 1.30 6.72 22.57 0.15 1.45 16 19 O -0.50 -8.34 13.29 -79.63 -1.06 -9.40 16 20 C 0.07 1.37 6.72 22.57 0.15 1.52 16 21 O -0.50 -9.46 13.29 -79.58 -1.06 -10.51 16 22 C -0.12 -2.47 9.63 22.35 0.22 -2.25 16 23 C -0.13 -4.15 5.17 30.58 0.16 -3.99 16 24 C -0.10 -3.90 5.14 30.58 0.16 -3.75 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 2.30 7.80 -2.39 -0.02 2.28 16 32 H 0.34 8.58 8.46 -89.69 -0.76 7.82 16 33 H 0.08 1.66 8.00 -2.39 -0.02 1.64 16 34 H 0.05 0.99 7.38 -2.38 -0.02 0.97 16 35 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.41 2.25 9.06 -74.06 -0.67 1.58 16 38 H 0.41 3.10 9.06 -74.06 -0.67 2.43 16 39 H 0.13 2.70 8.06 -2.91 -0.02 2.67 16 40 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 41 H 0.07 1.88 7.45 -2.38 -0.02 1.86 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -69.04 348.48 -1.28 -70.33 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -1.07 Total: 18.76 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 2.72 Total: -40.70 kcal Atomic # 7 Polarization: -71.76 SS G_CDS: -2.85 Total: -74.60 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -2.12 Total: -19.91 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -69.04 -1.28 -70.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.399 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds