Wall clock time and date at job start Tue Mar 31 2020 07:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00583 * 2 1 4 4 H 1.48505 * 109.46995 * 270.00725 * 3 2 1 5 5 H 1.48505 * 109.46918 * 29.99925 * 3 2 1 6 6 H 1.48494 * 109.47476 * 150.00214 * 3 2 1 7 7 C 1.37877 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00611 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47316 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47411 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46783 * 299.99525 * 11 10 9 13 13 N 1.46897 * 109.47218 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00113 * 155.00084 * 13 12 11 15 15 H 1.08999 * 109.46946 * 35.00680 * 14 13 12 16 16 C 1.53001 * 109.47238 * 155.00021 * 14 13 12 17 17 C 1.53000 * 117.50223 * 185.00341 * 16 14 13 18 18 C 1.52997 * 117.49889 * 116.37603 * 16 14 13 19 19 C 1.53000 * 109.47205 * 275.00319 * 14 13 12 20 20 F 1.39891 * 109.46912 * 299.99890 * 19 14 13 21 21 F 1.39898 * 109.47098 * 59.99870 * 19 14 13 22 22 F 1.39905 * 109.46647 * 180.02562 * 19 14 13 23 23 C 1.53010 * 109.46921 * 60.00325 * 12 11 10 24 24 C 1.52997 * 109.47289 * 300.00620 * 9 7 2 25 25 H 0.97009 * 119.99475 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47252 * 60.00569 * 9 7 2 27 27 H 1.09001 * 109.47303 * 59.99790 * 10 9 7 28 28 H 1.09006 * 109.47122 * 300.00368 * 10 9 7 29 29 H 1.08993 * 109.47060 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.47265 * 59.99550 * 11 10 9 31 31 H 1.08994 * 109.47597 * 300.00437 * 12 11 10 32 32 H 1.00900 * 110.99707 * 31.04914 * 13 12 11 33 33 H 1.09002 * 115.55911 * 330.69031 * 16 14 13 34 34 H 1.08990 * 117.49990 * 145.01974 * 17 16 14 35 35 H 1.09004 * 117.49237 * 359.97438 * 17 16 14 36 36 H 1.08999 * 117.49685 * 0.02562 * 18 16 14 37 37 H 1.08999 * 117.52022 * 214.97106 * 18 16 14 38 38 H 1.08994 * 109.46894 * 59.99681 * 23 12 11 39 39 H 1.08998 * 109.46769 * 180.02562 * 23 12 11 40 40 H 1.09006 * 109.46892 * 299.99370 * 24 9 7 41 41 H 1.09002 * 109.47487 * 59.99837 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 0.6001 -5.0685 1.2478 13 7 -0.1349 -6.3403 1.2470 14 6 -0.5021 -6.7371 2.6129 15 1 -0.7311 -5.8479 3.2003 16 6 -1.7307 -7.6478 2.5666 17 6 -2.3431 -8.0764 3.9015 18 6 -1.5623 -9.0867 3.0585 19 6 0.6651 -7.4875 3.2573 20 9 0.9588 -8.6287 2.5033 21 9 1.7884 -6.6547 3.2996 22 9 0.3150 -7.8658 4.5579 23 6 -0.3942 -3.9055 1.2479 24 6 0.3717 -2.5804 1.2489 25 1 -0.4850 0.8402 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 2.1883 -5.8156 -0.0007 30 1 0.8537 -5.0446 -0.8913 31 1 1.2264 -5.0110 2.1380 32 1 0.3979 -7.0656 0.7908 33 1 -2.4112 -7.4775 1.7323 34 1 -3.4264 -8.1881 3.9455 35 1 -1.8705 -7.7098 4.8128 36 1 -0.5764 -9.3844 3.4155 37 1 -2.1320 -9.8634 2.5482 38 1 -1.0205 -3.9630 0.3577 39 1 -1.0207 -3.9632 2.1379 40 1 0.9987 -2.5229 2.1387 41 1 -0.3366 -1.7519 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173329553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:39 Heat of formation + Delta-G solvation = -141.303568 kcal Electronic energy + Delta-G solvation = -24901.291398 eV Core-core repulsion = 20980.151314 eV Total energy + Delta-G solvation = -3921.140083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.37227 -47.78994 -47.73239 -38.76595 -37.42252 -34.68021 -32.35831 -29.79524 -29.56492 -27.03060 -24.53769 -23.74845 -22.61870 -21.78991 -20.80335 -20.48173 -18.83988 -18.67559 -18.53659 -17.53248 -16.31947 -15.81607 -15.35542 -14.76777 -14.54949 -14.54461 -14.44932 -14.13105 -14.10256 -13.86320 -13.74757 -13.42864 -13.05607 -12.82466 -12.63360 -12.10734 -11.70118 -11.54141 -11.50522 -11.27042 -11.02597 -10.78213 -10.61910 -10.56412 -10.33854 -10.27294 -10.17823 -9.87530 -9.34564 -8.93751 -8.71496 -8.50279 -8.27380 -5.95567 -4.01489 2.61071 3.31759 3.38670 3.41897 3.42754 3.62542 3.86232 3.89685 4.16083 4.46097 4.60316 4.71555 4.84659 5.14732 5.22504 5.34083 5.38573 5.47729 5.47950 5.70480 5.83778 5.90950 5.97780 6.09454 6.22866 6.33779 6.39090 6.49144 6.65815 6.74281 6.87396 7.04737 7.15652 7.25203 7.30781 7.54219 7.78076 8.04949 8.18499 8.50095 9.02641 9.63094 11.09996 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.003861 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.822570 B = 7250.871092 C = 7485.326613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.075 3.925 13 N -0.661 5.661 14 C 0.084 3.916 15 H 0.125 0.875 16 C -0.142 4.142 17 C -0.176 4.176 18 C -0.196 4.196 19 C 0.413 3.587 20 F -0.180 7.180 21 F -0.180 7.180 22 F -0.184 7.184 23 C -0.101 4.101 24 C -0.110 4.110 25 H 0.259 0.741 26 H 0.026 0.974 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.346 0.654 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.039 0.961 40 H 0.031 0.969 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 -16.951 6.514 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.033 4.033 13 N -0.291 5.291 14 C -0.029 4.029 15 H 0.143 0.857 16 C -0.161 4.161 17 C -0.214 4.214 18 C -0.232 4.232 19 C 0.357 3.643 20 F -0.161 7.161 21 F -0.161 7.161 22 F -0.166 7.166 23 C -0.139 4.139 24 C -0.148 4.148 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.166 0.834 33 H 0.150 0.850 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -3.861 -16.534 6.362 18.132 hybrid contribution 1.559 0.434 0.508 1.696 sum -2.302 -16.100 6.871 17.656 Atomic orbital electron populations 1.69874 1.05819 1.26252 1.50974 1.24954 0.94823 0.98937 0.95232 0.86663 0.79922 0.83768 0.78041 1.20774 1.21298 1.20017 1.21239 0.92868 0.90814 1.50219 0.92858 1.18657 0.92576 0.91384 0.94360 1.21597 0.98622 0.93904 1.00248 1.21702 0.97643 0.98772 0.97151 1.22003 0.94497 0.87979 0.98853 1.60697 1.49713 1.06545 1.12101 1.22559 0.89643 0.98242 0.92443 0.85744 1.22221 0.98540 0.95384 0.99953 1.23154 1.00155 1.03351 0.94699 1.23527 1.03148 0.92569 1.04001 1.22285 0.86225 0.78632 0.77204 1.93110 1.94312 1.52644 1.76059 1.93191 1.55519 1.71176 1.96210 1.93134 1.91667 1.91853 1.39909 1.21643 0.97031 0.94685 1.00583 1.21644 0.99633 0.94872 0.98693 0.93108 0.95561 0.93448 0.93183 0.93817 0.91565 0.92700 0.83361 0.84987 0.88251 0.88135 0.87934 0.88342 0.91996 0.94217 0.95001 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.18 2.10 -91.77 -0.19 0.99 16 10 C -0.11 -2.15 5.14 -26.73 -0.14 -2.29 16 11 C -0.11 -1.94 5.19 -26.73 -0.14 -2.08 16 12 C 0.07 1.21 2.12 -67.71 -0.14 1.07 16 13 N -0.66 -8.86 6.05 -99.74 -0.60 -9.46 16 14 C 0.08 1.01 2.40 -67.71 -0.16 0.85 16 15 H 0.12 1.54 7.11 -51.93 -0.37 1.17 16 16 C -0.14 -1.46 5.96 -90.62 -0.54 -2.00 16 17 C -0.18 -1.61 9.74 -26.73 -0.26 -1.87 16 18 C -0.20 -1.86 8.93 -26.73 -0.24 -2.10 16 19 C 0.41 5.12 2.42 37.16 0.09 5.21 16 20 F -0.18 -2.18 14.06 2.25 0.03 -2.15 16 21 F -0.18 -2.57 15.05 2.25 0.03 -2.53 16 22 F -0.18 -2.21 13.63 2.25 0.03 -2.18 16 23 C -0.10 -1.89 5.41 -26.70 -0.14 -2.03 16 24 C -0.11 -2.51 4.98 -26.71 -0.13 -2.65 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.06 0.93 5.86 -51.93 -0.30 0.63 16 32 H 0.35 4.37 7.50 -39.29 -0.29 4.07 16 33 H 0.13 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.94 6.79 -51.93 -0.35 0.59 16 36 H 0.10 1.07 4.50 -51.93 -0.23 0.83 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.04 0.68 7.43 -51.93 -0.39 0.30 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 LS Contribution 321.96 15.07 4.85 4.85 Total: -1.00 -27.20 321.96 -8.46 -35.66 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.02 Total: 3.74 kcal Atomic # 6 Polarization: -17.19 SS G_CDS: -2.39 Total: -19.58 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.02 Total: -33.99 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.10 Total: -6.86 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.20 -8.46 -35.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.645 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds