Wall clock time and date at job start Tue Mar 31 2020 07:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00583 * 2 1 4 4 H 1.48505 * 109.46995 * 270.00725 * 3 2 1 5 5 H 1.48505 * 109.46918 * 29.99925 * 3 2 1 6 6 H 1.48494 * 109.47476 * 150.00214 * 3 2 1 7 7 C 1.37877 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00611 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99593 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47316 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47411 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46783 * 299.99525 * 11 10 9 13 13 N 1.46897 * 109.47218 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00113 * 155.00084 * 13 12 11 15 15 H 1.08999 * 109.46946 * 35.00680 * 14 13 12 16 16 C 1.53001 * 109.47238 * 155.00021 * 14 13 12 17 17 C 1.53000 * 117.50223 * 185.00341 * 16 14 13 18 18 C 1.52997 * 117.49889 * 116.37603 * 16 14 13 19 19 C 1.53000 * 109.47205 * 275.00319 * 14 13 12 20 20 F 1.39891 * 109.46912 * 299.99890 * 19 14 13 21 21 F 1.39898 * 109.47098 * 59.99870 * 19 14 13 22 22 F 1.39905 * 109.46647 * 180.02562 * 19 14 13 23 23 C 1.53010 * 109.46921 * 60.00325 * 12 11 10 24 24 C 1.52997 * 109.47289 * 300.00620 * 9 7 2 25 25 H 0.97009 * 119.99475 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47252 * 60.00569 * 9 7 2 27 27 H 1.09001 * 109.47303 * 59.99790 * 10 9 7 28 28 H 1.09006 * 109.47122 * 300.00368 * 10 9 7 29 29 H 1.08993 * 109.47060 * 180.02562 * 11 10 9 30 30 H 1.08993 * 109.47265 * 59.99550 * 11 10 9 31 31 H 1.08994 * 109.47597 * 300.00437 * 12 11 10 32 32 H 1.00900 * 110.99707 * 31.04914 * 13 12 11 33 33 H 1.09002 * 115.55911 * 330.69031 * 16 14 13 34 34 H 1.08990 * 117.49990 * 145.01974 * 17 16 14 35 35 H 1.09004 * 117.49237 * 359.97438 * 17 16 14 36 36 H 1.08999 * 117.49685 * 0.02562 * 18 16 14 37 37 H 1.08999 * 117.52022 * 214.97106 * 18 16 14 38 38 H 1.08994 * 109.46894 * 59.99681 * 23 12 11 39 39 H 1.08998 * 109.46769 * 180.02562 * 23 12 11 40 40 H 1.09006 * 109.46892 * 299.99370 * 24 9 7 41 41 H 1.09002 * 109.47487 * 59.99837 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 0.6001 -5.0685 1.2478 13 7 -0.1349 -6.3403 1.2470 14 6 -0.5021 -6.7371 2.6129 15 1 -0.7311 -5.8479 3.2003 16 6 -1.7307 -7.6478 2.5666 17 6 -2.3431 -8.0764 3.9015 18 6 -1.5623 -9.0867 3.0585 19 6 0.6651 -7.4875 3.2573 20 9 0.9588 -8.6287 2.5033 21 9 1.7884 -6.6547 3.2996 22 9 0.3150 -7.8658 4.5579 23 6 -0.3942 -3.9055 1.2479 24 6 0.3717 -2.5804 1.2489 25 1 -0.4850 0.8402 0.0004 26 1 0.6240 -2.5567 -0.8904 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 2.1883 -5.8156 -0.0007 30 1 0.8537 -5.0446 -0.8913 31 1 1.2264 -5.0110 2.1380 32 1 0.3979 -7.0656 0.7908 33 1 -2.4112 -7.4775 1.7323 34 1 -3.4264 -8.1881 3.9455 35 1 -1.8705 -7.7098 4.8128 36 1 -0.5764 -9.3844 3.4155 37 1 -2.1320 -9.8634 2.5482 38 1 -1.0205 -3.9630 0.3577 39 1 -1.0207 -3.9632 2.1379 40 1 0.9987 -2.5229 2.1387 41 1 -0.3366 -1.7519 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173329553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:38 Heat of formation + Delta-G solvation = -155.336430 kcal Electronic energy + Delta-G solvation = -24901.899908 eV Core-core repulsion = 20980.151314 eV Total energy + Delta-G solvation = -3921.748594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.35900 -48.81863 -48.69267 -40.02585 -38.54523 -36.07990 -34.16947 -31.41339 -31.05945 -28.41971 -26.12786 -24.95738 -23.40572 -23.29471 -22.10348 -21.70226 -20.36558 -19.72389 -19.56616 -18.55321 -18.37100 -16.79438 -16.66993 -16.36151 -15.78819 -15.57559 -15.40723 -15.24423 -15.14265 -15.05336 -14.85599 -14.67694 -14.61242 -14.40531 -14.02083 -13.61109 -13.16665 -12.94189 -12.82316 -12.65874 -12.44873 -12.22673 -12.22075 -12.08209 -11.86465 -11.71371 -11.30235 -11.14912 -11.07687 -10.74084 -10.52335 -10.34229 -9.72000 -8.05197 -6.18758 1.41380 1.42574 1.52205 1.63937 2.44620 2.51381 2.62523 2.92341 3.00991 3.17832 3.21517 3.72495 3.88334 3.92675 4.01597 4.10143 4.27411 4.40814 4.44643 4.59691 4.69352 4.78749 4.81817 4.84638 4.95813 4.96648 5.02687 5.16372 5.19887 5.24924 5.29831 5.40682 5.51355 5.61386 5.71116 5.84341 6.07341 6.12563 6.26765 6.44754 6.93945 7.49098 8.98588 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.003861 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.822570 B = 7250.871092 C = 7485.326613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.049 0.951 9 C 0.045 3.955 10 C -0.100 4.100 11 C -0.108 4.108 12 C 0.086 3.914 13 N -0.655 5.655 14 C 0.086 3.914 15 H 0.121 0.879 16 C -0.149 4.149 17 C -0.169 4.169 18 C -0.193 4.193 19 C 0.415 3.585 20 F -0.177 7.177 21 F -0.191 7.191 22 F -0.181 7.181 23 C -0.091 4.091 24 C -0.102 4.102 25 H 0.259 0.741 26 H -0.005 1.005 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.354 0.646 33 H 0.135 0.865 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.024 0.976 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 -18.345 6.999 19.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.067 0.933 9 C 0.026 3.974 10 C -0.138 4.138 11 C -0.146 4.146 12 C -0.023 4.023 13 N -0.286 5.286 14 C -0.027 4.027 15 H 0.139 0.861 16 C -0.168 4.168 17 C -0.206 4.206 18 C -0.229 4.229 19 C 0.359 3.641 20 F -0.158 7.158 21 F -0.173 7.173 22 F -0.163 7.163 23 C -0.129 4.129 24 C -0.141 4.141 25 H 0.069 0.931 26 H 0.013 0.987 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.176 0.824 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.852 -17.948 6.847 19.593 hybrid contribution 1.549 0.852 0.367 1.806 sum -2.303 -17.096 7.214 18.698 Atomic orbital electron populations 1.70014 1.07032 1.26926 1.51493 1.25694 0.95642 1.02147 0.94979 0.85702 0.78805 0.79859 0.78154 1.20257 1.20909 1.19482 1.21643 0.92967 0.92526 1.50295 0.93297 1.18634 0.93059 0.92128 0.93545 1.21456 0.97909 0.94314 1.00093 1.21610 0.97960 0.97555 0.97461 1.21703 0.93646 0.88531 0.98384 1.60550 1.49126 1.05621 1.13279 1.22597 0.90126 0.98582 0.91369 0.86101 1.22160 0.97958 0.95704 1.00952 1.23234 1.01100 1.02450 0.93859 1.23550 1.03016 0.92453 1.03919 1.22290 0.85820 0.78607 0.77384 1.93118 1.94296 1.52447 1.75979 1.93170 1.56239 1.71611 1.96282 1.93141 1.91588 1.91807 1.39730 1.21454 0.97107 0.93531 1.00808 1.21424 0.98823 0.96237 0.97595 0.93142 0.98663 0.93663 0.93244 0.91040 0.91651 0.92972 0.82391 0.84750 0.86631 0.88464 0.88820 0.86938 0.92979 0.92718 0.95733 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.95 11.32 21.45 0.24 -52.71 16 2 C 0.01 0.77 5.30 84.66 0.45 1.22 16 3 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.54 -29.77 8.56 25.60 0.22 -29.55 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 9 C 0.04 2.23 2.10 -11.54 -0.02 2.20 16 10 C -0.10 -4.03 5.14 30.59 0.16 -3.87 16 11 C -0.11 -3.49 5.19 30.60 0.16 -3.34 16 12 C 0.09 2.67 2.12 44.92 0.10 2.77 16 13 N -0.66 -16.22 6.05 -469.47 -2.84 -19.06 16 14 C 0.09 1.90 2.40 44.92 0.11 2.01 16 15 H 0.12 2.78 7.11 -2.39 -0.02 2.76 16 16 C -0.15 -2.72 5.96 -10.79 -0.06 -2.78 16 17 C -0.17 -2.65 9.74 30.60 0.30 -2.36 16 18 C -0.19 -3.17 8.93 30.60 0.27 -2.89 16 19 C 0.42 9.50 2.42 71.98 0.17 9.67 16 20 F -0.18 -3.91 14.06 44.97 0.63 -3.28 16 21 F -0.19 -5.16 15.05 44.97 0.68 -4.48 16 22 F -0.18 -4.02 13.63 44.97 0.61 -3.41 16 23 C -0.09 -3.36 5.41 30.61 0.17 -3.19 16 24 C -0.10 -4.78 4.98 30.61 0.15 -4.62 16 25 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 26 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 27 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.69 5.86 -2.39 -0.01 1.67 16 32 H 0.35 8.02 7.50 -89.69 -0.67 7.34 16 33 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.10 1.61 6.79 -2.38 -0.02 1.59 16 36 H 0.09 1.74 4.50 -2.39 -0.01 1.73 16 37 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.84 7.43 -2.39 -0.02 1.82 16 40 H 0.02 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 Total: -1.00 -58.73 321.96 3.88 -54.85 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.37 Total: 16.92 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 2.16 Total: -34.74 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -2.60 Total: -71.77 kcal Atomic # 9 Polarization: -13.08 SS G_CDS: 1.92 Total: -11.16 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -58.73 3.88 -54.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173329553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.486 kcal (2) G-P(sol) polarization free energy of solvation -58.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds