Wall clock time and date at job start Tue Mar 31 2020 07:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48504 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47370 * 300.00314 * 3 2 1 6 6 H 1.48505 * 109.47171 * 60.00546 * 3 2 1 7 7 C 1.37881 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47579 * 300.00358 * 10 9 7 12 12 C 1.53006 * 109.46793 * 299.99946 * 11 10 9 13 13 N 1.46898 * 109.46741 * 180.02562 * 12 11 10 14 14 C 1.46850 * 110.99813 * 180.02562 * 13 12 11 15 15 C 1.53033 * 109.52490 * 174.15761 * 14 13 12 16 16 C 1.53119 * 109.27787 * 59.17980 * 15 14 13 17 17 F 1.39898 * 109.52118 * 182.44164 * 16 15 14 18 18 F 1.39895 * 109.57890 * 62.28000 * 16 15 14 19 19 C 1.53126 * 109.16048 * 302.34386 * 16 15 14 20 20 H 1.09006 * 109.50177 * 297.71578 * 19 16 15 21 21 F 1.39893 * 109.50565 * 177.59620 * 19 16 15 22 22 C 1.46845 * 111.00565 * 55.79023 * 13 12 11 23 23 C 1.52997 * 109.47014 * 59.99708 * 12 11 10 24 24 C 1.52994 * 109.47198 * 299.99771 * 23 12 11 25 25 H 0.97007 * 119.99680 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47538 * 300.00019 * 9 7 2 27 27 H 1.09005 * 109.47610 * 179.97438 * 10 9 7 28 28 H 1.09005 * 109.47186 * 59.99962 * 10 9 7 29 29 H 1.08999 * 109.47431 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.46974 * 59.99885 * 11 10 9 31 31 H 1.08997 * 109.46809 * 299.99767 * 12 11 10 32 32 H 1.09005 * 109.46186 * 54.13967 * 14 13 12 33 33 H 1.08998 * 109.46012 * 294.17361 * 14 13 12 34 34 H 1.09004 * 109.50318 * 299.23790 * 15 14 13 35 35 H 1.08999 * 109.53400 * 179.13825 * 15 14 13 36 36 H 1.08995 * 109.46315 * 65.81881 * 22 13 12 37 37 H 1.09005 * 109.45975 * 305.85394 * 22 13 12 38 38 H 1.08997 * 109.47285 * 60.00350 * 23 12 11 39 39 H 1.09004 * 109.46955 * 179.97438 * 23 12 11 40 40 H 1.08997 * 109.47475 * 300.00462 * 24 23 12 41 41 H 1.09004 * 109.47212 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6621 -0.0018 11 6 3.1238 -3.5806 -1.2517 12 6 2.2432 -3.6610 -2.5003 13 7 3.0870 -3.5834 -3.7003 14 6 2.2740 -3.6570 -4.9210 15 6 3.1652 -3.4276 -6.1437 16 6 4.2644 -4.4932 -6.1751 17 9 5.1152 -4.2552 -7.2598 18 9 3.6855 -5.7602 -6.3042 19 6 5.0658 -4.4271 -4.8720 20 1 5.5494 -3.4535 -4.7912 21 9 6.0373 -5.4337 -4.8696 22 6 4.1198 -4.6271 -3.6859 23 6 1.2491 -2.4981 -2.4990 24 6 0.3704 -2.5797 -1.2493 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5571 0.8896 27 1 1.7000 -4.6061 -0.0014 28 1 2.8724 -3.6048 0.8877 29 1 3.8323 -4.4089 -1.2523 30 1 3.6689 -2.6367 -1.2516 31 1 1.6982 -4.6050 -2.5003 32 1 1.4988 -2.8914 -4.8877 33 1 1.8098 -4.6409 -4.9893 34 1 3.6189 -2.4384 -6.0828 35 1 2.5646 -3.4974 -7.0506 36 1 3.6474 -5.6066 -3.7598 37 1 4.6851 -4.5660 -2.7559 38 1 1.7941 -1.5541 -2.4991 39 1 0.6220 -2.5551 -3.3889 40 1 -0.1746 -3.5236 -1.2492 41 1 -0.3376 -1.7508 -1.2481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:32 Heat of formation + Delta-G solvation = -160.462005 kcal Electronic energy + Delta-G solvation = -25137.633341 eV Core-core repulsion = 21215.662485 eV Total energy + Delta-G solvation = -3921.970856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.43147 -47.69010 -47.20832 -39.29432 -36.69109 -33.05908 -31.55041 -31.13311 -29.43901 -28.15156 -24.97924 -24.05547 -23.68418 -21.15173 -20.91961 -20.13981 -18.74239 -17.88616 -17.36534 -16.91729 -16.05982 -15.88036 -15.74952 -15.19029 -14.70826 -14.34861 -14.07041 -13.97031 -13.85124 -13.68066 -13.47591 -13.12888 -12.96375 -12.71102 -12.48288 -12.34266 -11.89773 -11.65379 -11.38732 -11.13826 -11.06446 -10.93414 -10.82509 -10.59808 -10.37944 -10.35155 -10.14561 -9.66856 -9.24172 -8.87799 -8.63924 -8.33007 -8.24110 -5.97389 -4.01298 3.24840 3.29096 3.38211 3.41587 3.60378 3.71848 3.97009 4.15945 4.40494 4.44771 4.65922 4.99280 5.10310 5.20448 5.28885 5.33452 5.33699 5.49027 5.59087 5.69038 5.79297 5.81202 5.91354 6.18109 6.31925 6.44065 6.45483 6.57648 6.68033 6.77134 6.97756 7.09190 7.16110 7.22845 7.46436 7.55002 7.73696 7.91399 8.13981 8.47739 9.01177 9.62213 11.08621 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.004524 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.139859 B = 6188.162065 C = 6390.919145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.884 3.116 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.497 4.497 8 H 0.056 0.944 9 C 0.042 3.958 10 C -0.106 4.106 11 C -0.102 4.102 12 C 0.097 3.903 13 N -0.530 5.530 14 C 0.047 3.953 15 C -0.152 4.152 16 C 0.265 3.735 17 F -0.195 7.195 18 F -0.192 7.192 19 C 0.063 3.937 20 H 0.123 0.877 21 F -0.195 7.195 22 C 0.026 3.974 23 C -0.092 4.092 24 C -0.108 4.108 25 H 0.258 0.742 26 H 0.024 0.976 27 H 0.032 0.968 28 H 0.049 0.951 29 H 0.037 0.963 30 H 0.081 0.919 31 H 0.031 0.969 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.033 0.967 40 H 0.012 0.988 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 -7.735 -10.618 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.024 3.976 10 C -0.144 4.144 11 C -0.140 4.140 12 C -0.010 4.010 13 N -0.255 5.255 14 C -0.081 4.081 15 C -0.191 4.191 16 C 0.228 3.772 17 F -0.176 7.176 18 F -0.173 7.173 19 C 0.026 3.974 20 H 0.140 0.860 21 F -0.176 7.176 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.049 0.951 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.052 0.948 40 H 0.031 0.969 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.775 -7.214 -10.645 14.097 hybrid contribution 0.191 -0.055 -0.277 0.341 sum 5.966 -7.269 -10.922 14.413 Atomic orbital electron populations 1.69873 1.05836 1.26061 1.51405 1.24925 0.94734 0.98801 0.95487 0.86667 0.80277 0.84382 0.77463 1.19844 1.21185 1.21280 1.21169 0.92760 0.90298 1.49336 0.92579 1.18704 0.92667 0.92145 0.94075 1.21554 0.98293 0.98659 0.95917 1.21571 0.97263 1.01512 0.93627 1.21729 0.93283 0.98318 0.87636 1.61986 1.14857 1.45759 1.02931 1.22184 0.95719 1.02168 0.88031 1.22627 0.96493 0.98817 1.01130 1.21856 0.88297 0.81961 0.85077 1.93030 1.72427 1.94387 1.57742 1.93015 1.85105 1.42817 1.96409 1.22617 0.88349 0.92220 0.94240 0.85971 1.92864 1.64261 1.63163 1.97281 1.22663 0.94654 0.95027 0.97916 1.21482 0.95986 0.98082 0.97402 1.21527 0.98715 0.99443 0.94908 0.93243 0.95751 0.94946 0.93242 0.94431 0.90002 0.95084 0.87792 0.93889 0.87330 0.88421 0.93062 0.87384 0.89964 0.94838 0.96910 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 11.32 55.43 0.63 -23.69 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 3 Si 0.88 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.50 -12.57 6.61 -34.44 -0.23 -12.80 16 8 H 0.06 1.42 6.71 -52.48 -0.35 1.07 16 9 C 0.04 0.98 2.59 -91.77 -0.24 0.75 16 10 C -0.11 -2.06 5.41 -26.73 -0.14 -2.20 16 11 C -0.10 -1.77 4.62 -26.73 -0.12 -1.90 16 12 C 0.10 1.59 1.95 -67.71 -0.13 1.46 16 13 N -0.53 -7.45 4.52 -226.70 -1.03 -8.47 16 14 C 0.05 0.57 5.11 -3.83 -0.02 0.55 16 15 C -0.15 -1.60 5.62 -26.65 -0.15 -1.75 16 16 C 0.26 3.24 1.87 -26.60 -0.05 3.19 16 17 F -0.20 -2.54 17.07 2.25 0.04 -2.50 16 18 F -0.19 -2.65 16.19 2.25 0.04 -2.61 16 19 C 0.06 0.77 3.58 -26.65 -0.10 0.68 16 20 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 21 F -0.20 -2.68 17.04 2.25 0.04 -2.64 16 22 C 0.03 0.34 4.76 -3.84 -0.02 0.32 16 23 C -0.09 -1.74 4.76 -26.74 -0.13 -1.87 16 24 C -0.11 -2.35 5.24 -26.73 -0.14 -2.49 16 25 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.04 0.57 6.22 -51.93 -0.32 0.25 16 30 H 0.08 1.58 6.62 -51.93 -0.34 1.23 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.10 1.28 6.01 -51.93 -0.31 0.97 16 33 H 0.04 0.53 7.88 -51.93 -0.41 0.12 16 34 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.68 7.88 -51.93 -0.41 0.27 16 37 H 0.11 1.38 5.90 -51.93 -0.31 1.07 16 38 H 0.08 1.77 7.22 -51.93 -0.37 1.39 16 39 H 0.03 0.57 6.28 -51.93 -0.33 0.24 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.09 2.34 6.07 -51.93 -0.31 2.02 16 LS Contribution 314.63 15.07 4.74 4.74 Total: -1.00 -26.71 314.63 -8.11 -34.82 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -5.99 Total: -0.60 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.56 Total: -14.55 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: -0.40 Total: -32.16 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.11 Total: -7.76 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.71 -8.11 -34.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.640 kcal (2) G-P(sol) polarization free energy of solvation -26.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds