Wall clock time and date at job start Tue Mar 31 2020 07:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00302 * 2 1 4 4 H 1.48504 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47370 * 300.00314 * 3 2 1 6 6 H 1.48505 * 109.47171 * 60.00546 * 3 2 1 7 7 C 1.37881 * 119.99620 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99649 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99964 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47054 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47579 * 300.00358 * 10 9 7 12 12 C 1.53006 * 109.46793 * 299.99946 * 11 10 9 13 13 N 1.46898 * 109.46741 * 180.02562 * 12 11 10 14 14 C 1.46850 * 110.99813 * 180.02562 * 13 12 11 15 15 C 1.53033 * 109.52490 * 174.15761 * 14 13 12 16 16 C 1.53119 * 109.27787 * 59.17980 * 15 14 13 17 17 F 1.39898 * 109.52118 * 182.44164 * 16 15 14 18 18 F 1.39895 * 109.57890 * 62.28000 * 16 15 14 19 19 C 1.53126 * 109.16048 * 302.34386 * 16 15 14 20 20 H 1.09006 * 109.50177 * 297.71578 * 19 16 15 21 21 F 1.39893 * 109.50565 * 177.59620 * 19 16 15 22 22 C 1.46845 * 111.00565 * 55.79023 * 13 12 11 23 23 C 1.52997 * 109.47014 * 59.99708 * 12 11 10 24 24 C 1.52994 * 109.47198 * 299.99771 * 23 12 11 25 25 H 0.97007 * 119.99680 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47538 * 300.00019 * 9 7 2 27 27 H 1.09005 * 109.47610 * 179.97438 * 10 9 7 28 28 H 1.09005 * 109.47186 * 59.99962 * 10 9 7 29 29 H 1.08999 * 109.47431 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.46974 * 59.99885 * 11 10 9 31 31 H 1.08997 * 109.46809 * 299.99767 * 12 11 10 32 32 H 1.09005 * 109.46186 * 54.13967 * 14 13 12 33 33 H 1.08998 * 109.46012 * 294.17361 * 14 13 12 34 34 H 1.09004 * 109.50318 * 299.23790 * 15 14 13 35 35 H 1.08999 * 109.53400 * 179.13825 * 15 14 13 36 36 H 1.08995 * 109.46315 * 65.81881 * 22 13 12 37 37 H 1.09005 * 109.45975 * 305.85394 * 22 13 12 38 38 H 1.08997 * 109.47285 * 60.00350 * 23 12 11 39 39 H 1.09004 * 109.46955 * 179.97438 * 23 12 11 40 40 H 1.08997 * 109.47475 * 300.00462 * 24 23 12 41 41 H 1.09004 * 109.47212 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2450 -3.6621 -0.0018 11 6 3.1238 -3.5806 -1.2517 12 6 2.2432 -3.6610 -2.5003 13 7 3.0870 -3.5834 -3.7003 14 6 2.2740 -3.6570 -4.9210 15 6 3.1652 -3.4276 -6.1437 16 6 4.2644 -4.4932 -6.1751 17 9 5.1152 -4.2552 -7.2598 18 9 3.6855 -5.7602 -6.3042 19 6 5.0658 -4.4271 -4.8720 20 1 5.5494 -3.4535 -4.7912 21 9 6.0373 -5.4337 -4.8696 22 6 4.1198 -4.6271 -3.6859 23 6 1.2491 -2.4981 -2.4990 24 6 0.3704 -2.5797 -1.2493 25 1 -0.4850 0.8401 0.0004 26 1 0.6245 -2.5571 0.8896 27 1 1.7000 -4.6061 -0.0014 28 1 2.8724 -3.6048 0.8877 29 1 3.8323 -4.4089 -1.2523 30 1 3.6689 -2.6367 -1.2516 31 1 1.6982 -4.6050 -2.5003 32 1 1.4988 -2.8914 -4.8877 33 1 1.8098 -4.6409 -4.9893 34 1 3.6189 -2.4384 -6.0828 35 1 2.5646 -3.4974 -7.0506 36 1 3.6474 -5.6066 -3.7598 37 1 4.6851 -4.5660 -2.7559 38 1 1.7941 -1.5541 -2.4991 39 1 0.6220 -2.5551 -3.3889 40 1 -0.1746 -3.5236 -1.2492 41 1 -0.3376 -1.7508 -1.2481 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:31 Heat of formation + Delta-G solvation = -174.111226 kcal Electronic energy + Delta-G solvation = -25138.225215 eV Core-core repulsion = 21215.662485 eV Total energy + Delta-G solvation = -3922.562730 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.41359 -48.69859 -48.19813 -40.55948 -38.10313 -34.64458 -33.04305 -32.26862 -30.86200 -29.62568 -26.76983 -25.18698 -24.83222 -22.61237 -22.18636 -21.28936 -20.43952 -18.87420 -18.36197 -17.88749 -17.73852 -17.03444 -16.95542 -16.52079 -16.36757 -15.56049 -15.22130 -15.04492 -14.97974 -14.88989 -14.71169 -14.54905 -14.32033 -14.03879 -13.68973 -13.56212 -13.25835 -12.86981 -12.83413 -12.69082 -12.54509 -12.40055 -12.30595 -12.12533 -11.85780 -11.79355 -11.42347 -11.39536 -10.94021 -10.61738 -10.37438 -10.25257 -9.39159 -7.97930 -6.06770 1.43046 1.47560 1.56149 2.31820 2.50422 2.53677 2.80315 3.03279 3.19047 3.31196 3.45268 3.75153 3.98359 4.07329 4.10471 4.18026 4.34927 4.45825 4.47170 4.50376 4.63821 4.70502 4.77095 4.85328 4.91209 4.95958 4.96911 5.01563 5.05793 5.23905 5.43861 5.59065 5.67958 5.73563 5.79095 5.99401 6.03359 6.09746 6.29343 6.51975 7.03101 7.59097 9.07078 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.004524 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.139859 B = 6188.162065 C = 6390.919145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.497 4.497 8 H 0.054 0.946 9 C 0.036 3.964 10 C -0.102 4.102 11 C -0.096 4.096 12 C 0.107 3.893 13 N -0.534 5.534 14 C 0.046 3.954 15 C -0.144 4.144 16 C 0.261 3.739 17 F -0.200 7.200 18 F -0.202 7.202 19 C 0.063 3.937 20 H 0.139 0.861 21 F -0.204 7.204 22 C 0.029 3.971 23 C -0.081 4.081 24 C -0.103 4.103 25 H 0.256 0.744 26 H -0.014 1.014 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.104 0.896 33 H 0.044 0.956 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.050 0.950 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.024 0.976 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.824 -8.256 -11.943 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.182 4.182 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.216 1.216 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.018 3.982 10 C -0.140 4.140 11 C -0.134 4.134 12 C 0.000 4.000 13 N -0.259 5.259 14 C -0.082 4.082 15 C -0.182 4.182 16 C 0.225 3.775 17 F -0.181 7.181 18 F -0.184 7.184 19 C 0.026 3.974 20 H 0.156 0.844 21 F -0.185 7.185 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.142 4.142 25 H 0.065 0.935 26 H 0.004 0.996 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.122 0.878 33 H 0.062 0.938 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.068 0.932 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.959 -7.743 -11.978 15.870 hybrid contribution -0.190 0.071 0.158 0.257 sum 6.769 -7.671 -11.820 15.633 Atomic orbital electron populations 1.70013 1.07014 1.26438 1.52633 1.25563 0.95360 1.01627 0.95689 0.85804 0.79442 0.81073 0.77117 1.19175 1.21020 1.21591 1.21405 0.92707 0.91271 1.48192 0.92795 1.18715 0.93195 0.93175 0.93161 1.21457 0.97783 0.97548 0.97182 1.21478 0.97261 1.01644 0.92969 1.21453 0.92878 0.97196 0.88486 1.61883 1.14887 1.46464 1.02633 1.22236 0.95898 1.02249 0.87816 1.22614 0.95910 0.98627 1.01038 1.22051 0.88680 0.81958 0.84823 1.93022 1.72669 1.94386 1.57980 1.92998 1.85255 1.43655 1.96445 1.22708 0.88130 0.92640 0.93921 0.84352 1.92847 1.64645 1.63707 1.97303 1.22635 0.94347 0.94495 0.98426 1.21288 0.96133 0.97931 0.96571 1.21372 0.98445 0.98561 0.95820 0.93516 0.99556 0.93403 0.93421 0.91594 0.91916 0.94441 0.87827 0.93755 0.86218 0.86475 0.93183 0.87130 0.92680 0.92953 0.95729 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.40 11.32 21.45 0.24 -51.16 16 2 C 0.02 0.80 5.30 84.66 0.45 1.25 16 3 Si 0.94 42.35 29.54 68.60 2.03 44.38 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.50 -25.39 6.61 25.60 0.17 -25.22 16 8 H 0.05 2.73 6.71 -2.91 -0.02 2.71 16 9 C 0.04 1.69 2.59 -11.54 -0.03 1.66 16 10 C -0.10 -3.84 5.41 30.59 0.17 -3.68 16 11 C -0.10 -3.15 4.62 30.60 0.14 -3.00 16 12 C 0.11 3.30 1.95 44.92 0.09 3.38 16 13 N -0.53 -13.61 4.52 -871.14 -3.94 -17.55 16 14 C 0.05 0.99 5.11 86.32 0.44 1.43 16 15 C -0.14 -2.57 5.62 30.65 0.17 -2.40 16 16 C 0.26 5.72 1.87 30.68 0.06 5.77 16 17 F -0.20 -4.73 17.07 44.97 0.77 -3.96 16 18 F -0.20 -5.11 16.19 44.97 0.73 -4.38 16 19 C 0.06 1.38 3.58 30.65 0.11 1.49 16 20 H 0.14 2.57 8.14 -2.38 -0.02 2.55 16 21 F -0.20 -5.18 17.04 44.97 0.77 -4.41 16 22 C 0.03 0.68 4.76 86.32 0.41 1.09 16 23 C -0.08 -3.00 4.76 30.59 0.15 -2.86 16 24 C -0.10 -4.54 5.24 30.59 0.16 -4.38 16 25 H 0.26 13.76 8.31 -92.70 -0.77 12.99 16 26 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.07 1.81 6.22 -2.39 -0.01 1.79 16 30 H 0.06 2.32 6.62 -2.39 -0.02 2.30 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 2.27 6.01 -2.38 -0.01 2.26 16 33 H 0.04 0.97 7.88 -2.39 -0.02 0.95 16 34 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.18 7.88 -2.39 -0.02 1.16 16 37 H 0.11 2.48 5.90 -2.38 -0.01 2.47 16 38 H 0.05 2.34 7.22 -2.39 -0.02 2.32 16 39 H 0.05 1.71 6.28 -2.38 -0.01 1.69 16 40 H 0.02 0.98 8.14 -2.39 -0.02 0.97 16 41 H 0.06 3.04 6.07 -2.38 -0.01 3.02 16 Total: -1.00 -57.51 314.63 4.10 -53.40 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.03 Total: 9.14 kcal Atomic # 6 Polarization: -27.95 SS G_CDS: 2.48 Total: -25.47 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -3.70 Total: -68.71 kcal Atomic # 9 Polarization: -15.01 SS G_CDS: 2.26 Total: -12.75 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -57.51 4.10 -53.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.707 kcal (2) G-P(sol) polarization free energy of solvation -57.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds