Wall clock time and date at job start Tue Mar 31 2020 07:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99912 * 2 1 4 4 H 1.48494 * 109.47405 * 240.00058 * 3 2 1 5 5 H 1.48500 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47097 * 119.99800 * 3 2 1 7 7 C 1.37875 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99846 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47463 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47014 * 300.00035 * 11 10 9 13 13 N 1.46902 * 109.46807 * 179.97438 * 12 11 10 14 14 C 1.46856 * 110.99619 * 180.02562 * 13 12 11 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 12 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 F 1.39893 * 109.52238 * 177.58384 * 16 15 14 18 18 F 1.39901 * 109.52141 * 297.77366 * 16 15 14 19 19 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 20 20 H 1.09005 * 109.49195 * 62.32110 * 19 16 15 21 21 F 1.39897 * 109.52190 * 182.40296 * 19 16 15 22 22 C 1.46846 * 111.00121 * 304.21026 * 13 12 11 23 23 C 1.53005 * 109.47080 * 60.00185 * 12 11 10 24 24 C 1.52995 * 109.47103 * 299.99452 * 23 12 11 25 25 H 0.96997 * 119.99868 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46881 * 60.00618 * 9 7 2 27 27 H 1.09000 * 109.46859 * 60.00247 * 10 9 7 28 28 H 1.09003 * 109.46882 * 300.00297 * 10 9 7 29 29 H 1.08992 * 109.46940 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.47029 * 60.00229 * 11 10 9 31 31 H 1.09000 * 109.47381 * 299.99978 * 12 11 10 32 32 H 1.09000 * 109.46462 * 65.82793 * 14 13 12 33 33 H 1.09001 * 109.45242 * 305.84772 * 14 13 12 34 34 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 35 35 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 36 36 H 1.09004 * 109.46012 * 294.17710 * 22 13 12 37 37 H 1.08997 * 109.46257 * 54.15030 * 22 13 12 38 38 H 1.08996 * 109.47262 * 60.00155 * 23 12 11 39 39 H 1.09003 * 109.46881 * 179.97438 * 23 12 11 40 40 H 1.08996 * 109.47635 * 300.00474 * 24 23 12 41 41 H 1.09002 * 109.47210 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 0.6004 -5.0685 1.2477 13 7 -0.1345 -6.3405 1.2467 14 6 -0.9922 -6.4536 2.4334 15 6 -1.6281 -7.8450 2.4740 16 6 -2.4539 -8.0616 1.2029 17 9 -2.9924 -9.3527 1.2096 18 9 -3.4893 -7.1222 1.1523 19 6 -1.5470 -7.8899 -0.0199 20 1 -0.7630 -8.6470 -0.0004 21 9 -2.3045 -8.0320 -1.1874 22 6 -0.9138 -6.4971 0.0120 23 6 -0.3939 -3.9056 1.2477 24 6 0.3710 -2.5806 1.2484 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8905 29 1 2.1887 -5.8155 -0.0016 30 1 0.8541 -5.0446 -0.8914 31 1 1.2267 -5.0110 2.1380 32 1 -1.7759 -5.6973 2.3886 33 1 -0.3922 -6.3022 3.3307 34 1 -0.8454 -8.6013 2.5328 35 1 -2.2763 -7.9235 3.3468 36 1 -1.6979 -5.7405 -0.0210 37 1 -0.2571 -6.3772 -0.8496 38 1 -1.0203 -3.9631 0.3575 39 1 -1.0212 -3.9639 2.1372 40 1 0.9974 -2.5231 2.1385 41 1 -0.3373 -1.7521 1.2479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:35 Heat of formation + Delta-G solvation = -164.150394 kcal Electronic energy + Delta-G solvation = -24937.461346 eV Core-core repulsion = 21015.330549 eV Total energy + Delta-G solvation = -3922.130796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.43465 -47.68868 -47.21753 -39.55401 -36.51921 -33.27441 -31.61179 -30.95953 -29.71494 -28.33472 -25.06134 -24.03788 -23.37998 -21.76947 -20.97604 -19.95118 -18.69279 -17.88096 -17.24241 -16.94986 -16.37488 -16.06331 -15.91585 -15.17570 -14.61392 -14.31597 -14.06964 -13.97651 -13.87775 -13.55631 -13.50526 -13.39568 -13.07876 -12.85241 -12.43193 -12.24073 -12.02582 -11.74353 -11.51793 -11.33708 -11.22738 -10.96691 -10.75699 -10.57956 -10.46689 -10.42196 -10.08785 -10.00271 -9.39354 -9.07732 -8.72863 -8.36723 -8.15429 -5.99322 -4.05851 3.22244 3.30500 3.35685 3.37962 3.56433 3.67239 3.93559 4.13293 4.37252 4.42787 4.60420 4.92832 5.02486 5.16824 5.25110 5.26784 5.30994 5.41621 5.46320 5.58952 5.72697 5.75292 5.80601 6.05178 6.12348 6.27023 6.31114 6.46355 6.57244 6.71274 6.81248 6.97294 7.01800 7.13840 7.22419 7.46406 7.72869 7.98737 8.12895 8.45314 8.98320 9.59142 11.06051 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.032572 B = 0.003777 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.422377 B = 7411.946964 C = 7487.258477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.107 4.107 11 C -0.111 4.111 12 C 0.091 3.909 13 N -0.532 5.532 14 C 0.046 3.954 15 C -0.152 4.152 16 C 0.264 3.736 17 F -0.195 7.195 18 F -0.189 7.189 19 C 0.064 3.936 20 H 0.120 0.880 21 F -0.193 7.193 22 C 0.021 3.979 23 C -0.149 4.149 24 C -0.105 4.105 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.619 -16.168 4.408 16.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.145 4.145 11 C -0.148 4.148 12 C -0.016 4.016 13 N -0.256 5.256 14 C -0.082 4.082 15 C -0.190 4.190 16 C 0.227 3.773 17 F -0.176 7.176 18 F -0.170 7.170 19 C 0.027 3.973 20 H 0.137 0.863 21 F -0.174 7.174 22 C -0.107 4.107 23 C -0.188 4.188 24 C -0.143 4.143 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.492 -16.442 4.398 17.201 hybrid contribution -0.491 1.498 -0.085 1.579 sum -2.983 -14.943 4.313 15.837 Atomic orbital electron populations 1.69861 1.05866 1.26440 1.50829 1.24965 0.94818 0.98999 0.95169 0.86711 0.79646 0.83365 0.78580 1.20332 1.21363 1.20337 1.21193 0.92851 0.90768 1.50415 0.92830 1.18654 0.92596 0.91611 0.94133 1.21614 0.98628 0.93950 1.00357 1.21686 0.98126 0.98836 0.96182 1.21826 0.94678 0.85047 1.00035 1.62291 1.26490 1.36392 1.00420 1.22133 0.96614 0.94361 0.95061 1.22613 1.00196 1.01022 0.95186 1.21845 0.83805 0.72542 0.99078 1.93028 1.87911 1.39058 1.97611 1.93042 1.61455 1.65017 1.97519 1.22617 0.92248 1.02518 0.79955 0.86269 1.92878 1.77798 1.97051 1.49658 1.22713 0.98518 0.93321 0.96187 1.22286 0.98342 0.97923 1.00248 1.21555 0.99488 0.94431 0.98868 0.93024 0.95866 0.93256 0.93194 0.92593 0.92504 0.89701 0.92772 0.88730 0.87618 0.88401 0.91923 0.87390 0.92709 0.93684 0.94744 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.72 8.56 -34.44 -0.29 -14.02 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.05 1.14 2.10 -91.77 -0.19 0.95 16 10 C -0.11 -2.08 5.14 -26.73 -0.14 -2.22 16 11 C -0.11 -1.75 4.85 -26.73 -0.13 -1.88 16 12 C 0.09 1.36 2.30 -67.71 -0.16 1.21 16 13 N -0.53 -6.65 4.68 -226.68 -1.06 -7.71 16 14 C 0.05 0.51 4.78 -3.83 -0.02 0.49 16 15 C -0.15 -1.41 5.61 -26.65 -0.15 -1.56 16 16 C 0.26 3.13 1.88 -26.56 -0.05 3.08 16 17 F -0.20 -2.44 17.07 2.25 0.04 -2.41 16 18 F -0.19 -2.68 16.18 2.25 0.04 -2.65 16 19 C 0.06 0.76 3.58 -26.61 -0.10 0.66 16 20 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 21 F -0.19 -2.69 17.05 2.25 0.04 -2.66 16 22 C 0.02 0.27 4.30 -3.84 -0.02 0.26 16 23 C -0.15 -2.64 4.51 -26.73 -0.12 -2.76 16 24 C -0.10 -2.32 4.98 -26.73 -0.13 -2.46 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.91 6.21 -51.93 -0.32 0.59 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.05 0.67 6.36 -51.93 -0.33 0.34 16 33 H 0.09 0.92 8.12 -51.93 -0.42 0.50 16 34 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.92 6.44 -51.93 -0.33 0.58 16 37 H 0.11 1.39 5.90 -51.93 -0.31 1.08 16 38 H 0.05 1.03 6.63 -51.93 -0.34 0.68 16 39 H 0.04 0.74 6.53 -51.93 -0.34 0.41 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -27.92 316.66 -8.22 -36.14 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -6.06 Total: -0.37 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -1.59 Total: -16.67 kcal Atomic # 7 Polarization: -31.68 SS G_CDS: -0.43 Total: -32.11 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.11 Total: -7.71 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.92 -8.22 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.013 kcal (2) G-P(sol) polarization free energy of solvation -27.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds