Wall clock time and date at job start Tue Mar 31 2020 07:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99912 * 2 1 4 4 H 1.48494 * 109.47405 * 240.00058 * 3 2 1 5 5 H 1.48500 * 109.46906 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47097 * 119.99800 * 3 2 1 7 7 C 1.37875 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99846 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00158 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47463 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47014 * 300.00035 * 11 10 9 13 13 N 1.46902 * 109.46807 * 179.97438 * 12 11 10 14 14 C 1.46856 * 110.99619 * 180.02562 * 13 12 11 15 15 C 1.53039 * 109.51787 * 185.84053 * 14 13 12 16 16 C 1.53123 * 109.31189 * 300.79882 * 15 14 13 17 17 F 1.39893 * 109.52238 * 177.58384 * 16 15 14 18 18 F 1.39901 * 109.52141 * 297.77366 * 16 15 14 19 19 C 1.53203 * 109.11533 * 57.63615 * 16 15 14 20 20 H 1.09005 * 109.49195 * 62.32110 * 19 16 15 21 21 F 1.39897 * 109.52190 * 182.40296 * 19 16 15 22 22 C 1.46846 * 111.00121 * 304.21026 * 13 12 11 23 23 C 1.53005 * 109.47080 * 60.00185 * 12 11 10 24 24 C 1.52995 * 109.47103 * 299.99452 * 23 12 11 25 25 H 0.96997 * 119.99868 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46881 * 60.00618 * 9 7 2 27 27 H 1.09000 * 109.46859 * 60.00247 * 10 9 7 28 28 H 1.09003 * 109.46882 * 300.00297 * 10 9 7 29 29 H 1.08992 * 109.46940 * 179.97438 * 11 10 9 30 30 H 1.09000 * 109.47029 * 60.00229 * 11 10 9 31 31 H 1.09000 * 109.47381 * 299.99978 * 12 11 10 32 32 H 1.09000 * 109.46462 * 65.82793 * 14 13 12 33 33 H 1.09001 * 109.45242 * 305.84772 * 14 13 12 34 34 H 1.09002 * 109.50563 * 60.76214 * 15 14 13 35 35 H 1.09003 * 109.50107 * 180.84195 * 15 14 13 36 36 H 1.09004 * 109.46012 * 294.17710 * 22 13 12 37 37 H 1.08997 * 109.46257 * 54.15030 * 22 13 12 38 38 H 1.08996 * 109.47262 * 60.00155 * 23 12 11 39 39 H 1.09003 * 109.46881 * 179.97438 * 23 12 11 40 40 H 1.08996 * 109.47635 * 300.00474 * 24 23 12 41 41 H 1.09002 * 109.47210 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 0.6004 -5.0685 1.2477 13 7 -0.1345 -6.3405 1.2467 14 6 -0.9922 -6.4536 2.4334 15 6 -1.6281 -7.8450 2.4740 16 6 -2.4539 -8.0616 1.2029 17 9 -2.9924 -9.3527 1.2096 18 9 -3.4893 -7.1222 1.1523 19 6 -1.5470 -7.8899 -0.0199 20 1 -0.7630 -8.6470 -0.0004 21 9 -2.3045 -8.0320 -1.1874 22 6 -0.9138 -6.4971 0.0120 23 6 -0.3939 -3.9056 1.2477 24 6 0.3710 -2.5806 1.2484 25 1 -0.4850 0.8400 -0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 2.8720 -3.6043 0.8895 28 1 2.8721 -3.6043 -0.8905 29 1 2.1887 -5.8155 -0.0016 30 1 0.8541 -5.0446 -0.8914 31 1 1.2267 -5.0110 2.1380 32 1 -1.7759 -5.6973 2.3886 33 1 -0.3922 -6.3022 3.3307 34 1 -0.8454 -8.6013 2.5328 35 1 -2.2763 -7.9235 3.3468 36 1 -1.6979 -5.7405 -0.0210 37 1 -0.2571 -6.3772 -0.8496 38 1 -1.0203 -3.9631 0.3575 39 1 -1.0212 -3.9639 2.1372 40 1 0.9974 -2.5231 2.1385 41 1 -0.3373 -1.7521 1.2479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330922.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:34 Heat of formation + Delta-G solvation = -179.464867 kcal Electronic energy + Delta-G solvation = -24938.125431 eV Core-core repulsion = 21015.330549 eV Total energy + Delta-G solvation = -3922.794882 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.40411 -48.70255 -48.19896 -40.75563 -37.91411 -34.92008 -33.07523 -31.99155 -31.17023 -29.85145 -26.63849 -25.19239 -24.55646 -23.21786 -22.23880 -21.24402 -20.12461 -18.83798 -18.38254 -18.24091 -17.88589 -17.11741 -16.95210 -16.63321 -16.25074 -15.34218 -15.16799 -15.04014 -14.99934 -14.94057 -14.69891 -14.61009 -14.47696 -14.15285 -13.87258 -13.39861 -13.24876 -13.02555 -12.90359 -12.76769 -12.61974 -12.47488 -12.28485 -12.01650 -11.94132 -11.78882 -11.72679 -11.34842 -11.08675 -10.78806 -10.55011 -10.36322 -9.36488 -8.06356 -6.20700 1.41742 1.42255 1.49855 2.32891 2.43752 2.54407 2.81637 3.03947 3.19737 3.20952 3.45836 3.73945 3.87823 4.04067 4.12378 4.17208 4.31363 4.37597 4.43606 4.50297 4.58266 4.64553 4.73130 4.81000 4.81494 4.88088 4.91484 5.02992 5.07240 5.23721 5.35380 5.38907 5.47901 5.61033 5.67909 5.90091 5.97593 6.05787 6.23627 6.43219 6.93344 7.47854 8.96679 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.032572 B = 0.003777 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.422377 B = 7411.946964 C = 7487.258477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.949 3.051 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.100 4.100 11 C -0.103 4.103 12 C 0.101 3.899 13 N -0.516 5.516 14 C 0.042 3.958 15 C -0.140 4.140 16 C 0.255 3.745 17 F -0.199 7.199 18 F -0.208 7.208 19 C 0.064 3.936 20 H 0.150 0.850 21 F -0.208 7.208 22 C 0.022 3.978 23 C -0.138 4.138 24 C -0.097 4.097 25 H 0.258 0.742 26 H -0.014 1.014 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.036 0.964 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.037 0.963 37 H 0.108 0.892 38 H 0.036 0.964 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -18.008 5.642 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.775 3.225 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.572 4.572 8 H 0.071 0.929 9 C 0.026 3.974 10 C -0.138 4.138 11 C -0.141 4.141 12 C -0.006 4.006 13 N -0.239 5.239 14 C -0.086 4.086 15 C -0.178 4.178 16 C 0.219 3.781 17 F -0.180 7.180 18 F -0.189 7.189 19 C 0.027 3.973 20 H 0.168 0.832 21 F -0.189 7.189 22 C -0.107 4.107 23 C -0.177 4.177 24 C -0.136 4.136 25 H 0.067 0.933 26 H 0.004 0.996 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.054 0.946 33 H 0.134 0.866 34 H 0.149 0.851 35 H 0.134 0.866 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.193 -18.298 5.634 19.183 hybrid contribution -0.929 2.089 -0.498 2.340 sum -2.121 -16.209 5.135 17.135 Atomic orbital electron populations 1.70026 1.07206 1.26929 1.51701 1.25730 0.95579 1.02318 0.95032 0.85747 0.78458 0.79410 0.78863 1.19795 1.21305 1.19463 1.21644 0.93099 0.92424 1.50039 0.92927 1.18642 0.93125 0.92564 0.93103 1.21469 0.97798 0.94100 1.00456 1.21597 0.98408 0.97595 0.96470 1.21648 0.94000 0.84879 1.00105 1.62319 1.26660 1.34040 1.00852 1.22275 0.96248 0.95117 0.94943 1.22626 1.00560 1.00376 0.94264 1.22211 0.83510 0.71966 1.00426 1.93019 1.88020 1.39221 1.97694 1.93009 1.62476 1.65784 1.97665 1.22796 0.92760 1.02400 0.79361 0.83244 1.92848 1.78305 1.97063 1.50699 1.22674 0.97860 0.93610 0.96517 1.22141 0.98562 0.96945 1.00032 1.21323 0.98653 0.95615 0.97985 0.93292 0.99617 0.92696 0.93510 0.89621 0.93050 0.88430 0.94576 0.86610 0.85056 0.86602 0.94430 0.87406 0.94477 0.92427 0.94839 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 2 C 0.01 0.64 5.30 84.65 0.45 1.09 16 3 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.53 -29.06 8.56 25.60 0.22 -28.84 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 9 C 0.04 2.14 2.10 -11.54 -0.02 2.11 16 10 C -0.10 -3.80 5.14 30.60 0.16 -3.65 16 11 C -0.10 -3.07 4.85 30.59 0.15 -2.92 16 12 C 0.10 2.82 2.30 44.92 0.10 2.93 16 13 N -0.52 -11.47 4.68 -871.08 -4.08 -15.55 16 14 C 0.04 0.79 4.78 86.32 0.41 1.20 16 15 C -0.14 -2.10 5.61 30.65 0.17 -1.93 16 16 C 0.26 5.51 1.88 30.70 0.06 5.57 16 17 F -0.20 -4.54 17.07 44.97 0.77 -3.77 16 18 F -0.21 -5.76 16.18 44.97 0.73 -5.04 16 19 C 0.06 1.38 3.58 30.67 0.11 1.49 16 20 H 0.15 2.33 8.14 -2.38 -0.02 2.31 16 21 F -0.21 -5.62 17.05 44.97 0.77 -4.86 16 22 C 0.02 0.54 4.30 86.33 0.37 0.91 16 23 C -0.14 -4.88 4.51 30.59 0.14 -4.75 16 24 C -0.10 -4.41 4.98 30.59 0.15 -4.25 16 25 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 26 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.05 1.60 6.21 -2.39 -0.01 1.58 16 31 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 32 H 0.04 0.84 6.36 -2.39 -0.02 0.82 16 33 H 0.12 1.77 8.12 -2.39 -0.02 1.75 16 34 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.04 1.11 6.44 -2.38 -0.02 1.10 16 37 H 0.11 2.63 5.90 -2.39 -0.01 2.62 16 38 H 0.04 1.43 6.63 -2.39 -0.02 1.42 16 39 H 0.06 1.88 6.53 -2.39 -0.02 1.87 16 40 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.05 2.75 6.07 -2.39 -0.01 2.74 16 Total: -1.00 -62.48 316.66 3.95 -58.54 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 1.03 Total: 9.37 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 2.47 Total: -31.04 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: -3.84 Total: -68.73 kcal Atomic # 9 Polarization: -15.92 SS G_CDS: 2.26 Total: -13.66 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -62.48 3.95 -58.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330922.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.928 kcal (2) G-P(sol) polarization free energy of solvation -62.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds