Wall clock time and date at job start Tue Mar 31 2020 08:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47045 * 274.49094 * 3 2 1 5 5 H 1.48507 * 109.46935 * 34.48958 * 3 2 1 6 6 H 1.48496 * 109.47359 * 154.49111 * 3 2 1 7 7 C 1.37872 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00058 * 354.75699 * 7 2 1 9 9 C 1.50697 * 120.00063 * 174.74812 * 7 2 1 10 10 C 1.52997 * 109.47406 * 214.37043 * 9 7 2 11 11 C 1.52994 * 109.47341 * 300.00168 * 10 9 7 12 12 C 1.53000 * 109.47182 * 299.99990 * 11 10 9 13 13 N 1.46897 * 109.47403 * 179.97438 * 12 11 10 14 14 C 1.47897 * 111.00140 * 301.65001 * 13 12 11 15 15 C 1.53996 * 107.22983 * 214.25373 * 14 13 12 16 16 C 1.54598 * 105.13620 * 1.12451 * 15 14 13 17 17 C 1.48809 * 111.18648 * 184.31081 * 13 12 11 18 18 H 1.08997 * 110.52037 * 41.07268 * 17 13 12 19 19 C 1.53001 * 110.70081 * 278.02310 * 17 13 12 20 20 F 1.39910 * 109.47176 * 310.50556 * 19 17 13 21 21 F 1.39898 * 109.46988 * 70.49774 * 19 17 13 22 22 F 1.39895 * 109.47547 * 190.50536 * 19 17 13 23 23 C 1.52994 * 109.47309 * 59.99649 * 12 11 10 24 24 C 1.53002 * 109.47342 * 94.37257 * 9 7 2 25 25 H 0.97002 * 119.99782 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47300 * 334.37226 * 9 7 2 27 27 H 1.09000 * 109.47506 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.47266 * 60.00250 * 10 9 7 29 29 H 1.08999 * 109.47516 * 179.97438 * 11 10 9 30 30 H 1.09001 * 109.47499 * 59.99801 * 11 10 9 31 31 H 1.09002 * 109.47204 * 299.99435 * 12 11 10 32 32 H 1.08998 * 109.92048 * 94.80092 * 14 13 12 33 33 H 1.09007 * 109.91773 * 333.70130 * 14 13 12 34 34 H 1.08999 * 110.31354 * 120.03447 * 15 14 13 35 35 H 1.09000 * 110.31256 * 242.11281 * 15 14 13 36 36 H 1.09003 * 110.72709 * 140.31229 * 16 15 14 37 37 H 1.09004 * 110.72479 * 263.42132 * 16 15 14 38 38 H 1.09002 * 109.47162 * 59.99760 * 23 12 11 39 39 H 1.08999 * 109.47508 * 180.02562 * 23 12 11 40 40 H 1.08995 * 109.47671 * 180.02562 * 24 9 7 41 41 H 1.09005 * 109.46741 * 300.00488 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4017 2.1013 -1.3958 5 1 1.4972 2.6234 0.7928 6 1 3.5909 1.4147 0.6029 7 6 2.0046 -1.1940 0.0005 8 1 1.4680 -2.1273 0.0864 9 6 3.5068 -1.1968 -0.1189 10 6 3.9529 -2.4247 -0.9152 11 6 3.4964 -3.6941 -0.1935 12 6 4.1189 -3.7384 1.2034 13 7 3.6801 -4.9569 1.8967 14 6 2.2055 -5.0074 1.9977 15 6 1.8630 -5.6881 3.3359 16 6 3.2279 -5.9915 3.9955 17 6 4.1805 -4.9883 3.2978 18 1 4.1012 -4.0016 3.7540 19 6 5.6243 -5.4923 3.3453 20 9 5.7302 -6.6747 2.6049 21 9 6.4745 -4.5237 2.8010 22 9 5.9886 -5.7394 4.6732 23 6 3.6729 -2.5105 1.9998 24 6 4.1295 -1.2411 1.2780 25 1 -0.4850 0.8401 -0.0004 26 1 3.8321 -0.2924 -0.6332 27 1 5.0394 -2.4264 -1.0020 28 1 3.5094 -2.3931 -1.9105 29 1 3.8138 -4.5689 -0.7610 30 1 2.4098 -3.6922 -0.1071 31 1 5.2055 -3.7404 1.1171 32 1 1.7963 -5.5876 1.1706 33 1 1.7972 -3.9969 1.9800 34 1 1.2805 -5.0148 3.9647 35 1 1.3122 -6.6122 3.1604 36 1 3.1883 -5.8034 5.0684 37 1 3.5325 -7.0190 3.7965 38 1 2.5863 -2.5085 2.0861 39 1 4.1168 -2.5418 2.9948 40 1 5.2160 -1.2426 1.1916 41 1 3.8116 -0.3663 1.8453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:23 Heat of formation + Delta-G solvation = -162.387129 kcal Electronic energy + Delta-G solvation = -25654.715615 eV Core-core repulsion = 21732.661280 eV Total energy + Delta-G solvation = -3922.054335 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.95289 -47.51341 -47.37632 -39.83711 -36.92478 -32.87240 -31.49752 -30.53428 -29.80249 -27.98017 -25.11963 -24.51229 -22.40917 -22.03772 -20.79392 -19.93082 -18.59858 -18.40639 -18.07292 -17.24690 -16.41141 -16.05292 -15.08084 -14.44151 -14.34369 -14.31545 -14.00483 -13.88579 -13.80030 -13.58702 -13.57590 -13.52932 -13.22618 -12.77794 -12.53058 -12.48705 -11.94632 -11.74093 -11.45139 -11.36224 -11.20022 -11.12701 -10.88776 -10.68908 -10.44818 -10.22539 -10.19483 -9.72335 -9.33769 -9.24145 -8.75487 -8.52060 -8.17563 -6.08149 -4.05606 2.80769 3.26616 3.36566 3.39509 3.67986 3.94142 4.03687 4.41898 4.54501 4.69672 4.79198 4.92628 5.16224 5.23532 5.38375 5.41941 5.50871 5.71669 5.73188 5.76929 5.88350 6.01039 6.09804 6.11874 6.21966 6.27908 6.30176 6.40328 6.47270 6.71566 6.75634 6.79531 6.98322 7.02097 7.13477 7.17745 7.32481 7.49094 7.81889 8.53220 8.96730 9.56765 11.04628 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.023602 B = 0.005297 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.032059 B = 5284.269725 C = 5649.953702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.871 3.129 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.008 3.992 10 C -0.099 4.099 11 C -0.099 4.099 12 C 0.072 3.928 13 N -0.499 5.499 14 C 0.030 3.970 15 C -0.127 4.127 16 C -0.114 4.114 17 C 0.005 3.995 18 H 0.106 0.894 19 C 0.465 3.535 20 F -0.174 7.174 21 F -0.183 7.183 22 F -0.188 7.188 23 C -0.139 4.139 24 C -0.104 4.104 25 H 0.262 0.738 26 H 0.029 0.971 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.030 0.970 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.854 -11.066 7.619 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.699 3.301 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.186 1.186 7 C -0.540 4.540 8 H 0.094 0.906 9 C -0.011 4.011 10 C -0.137 4.137 11 C -0.137 4.137 12 C -0.036 4.036 13 N -0.222 5.222 14 C -0.097 4.097 15 C -0.165 4.165 16 C -0.152 4.152 17 C -0.105 4.105 18 H 0.123 0.877 19 C 0.411 3.589 20 F -0.155 7.155 21 F -0.164 7.164 22 F -0.169 7.169 23 C -0.177 4.177 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.917 -11.405 7.296 15.685 hybrid contribution 0.392 1.707 0.477 1.815 sum 8.309 -9.699 7.773 14.951 Atomic orbital electron populations 1.69913 1.06253 1.26741 1.51248 1.25057 0.94614 0.98879 0.94665 0.86952 0.80703 0.84146 0.78289 1.20632 1.21755 1.18638 1.21010 0.89016 0.94254 1.49677 0.90576 1.19182 0.96864 0.93773 0.91237 1.21432 0.97644 0.95552 0.99094 1.21464 1.01777 0.97351 0.93080 1.22050 0.99941 0.86525 0.95087 1.64982 1.09151 1.38235 1.09827 1.22967 0.87240 1.01945 0.97553 1.22387 0.96340 1.01352 0.96397 1.22481 0.94423 0.98800 0.99487 1.24078 0.89610 1.01892 0.94966 0.87697 1.20346 0.89802 0.75846 0.72946 1.93173 1.96768 1.48467 1.77107 1.93169 1.74062 1.63348 1.85857 1.93149 1.93217 1.94479 1.36102 1.22069 1.02939 0.95844 0.96843 1.21650 0.97019 0.96073 0.99478 0.92868 0.95261 0.94656 0.92459 0.93181 0.90467 0.90212 0.89733 0.90759 0.90928 0.90566 0.90045 0.89951 0.89739 0.94300 0.95121 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 20.98 26.52 -169.99 -4.51 16.47 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.02 6.03 56.52 0.34 -5.68 16 7 C -0.50 -12.93 7.31 -34.44 -0.25 -13.18 16 8 H 0.08 2.09 6.27 -52.49 -0.33 1.77 16 9 C 0.01 0.19 2.13 -91.77 -0.20 -0.01 16 10 C -0.10 -1.92 5.44 -26.74 -0.15 -2.06 16 11 C -0.10 -1.77 4.85 -26.73 -0.13 -1.90 16 12 C 0.07 1.19 2.15 -67.72 -0.15 1.05 16 13 N -0.50 -7.34 4.82 -214.51 -1.03 -8.37 16 14 C 0.03 0.42 5.14 -2.76 -0.01 0.41 16 15 C -0.13 -1.40 6.93 -25.37 -0.18 -1.58 16 16 C -0.11 -1.22 6.16 -24.87 -0.15 -1.37 16 17 C 0.00 0.06 2.19 -65.63 -0.14 -0.08 16 18 H 0.11 1.38 5.51 -51.93 -0.29 1.10 16 19 C 0.47 6.30 2.89 37.16 0.11 6.41 16 20 F -0.17 -2.49 16.67 2.25 0.04 -2.45 16 21 F -0.18 -2.72 15.57 2.25 0.04 -2.69 16 22 F -0.19 -2.39 16.98 2.25 0.04 -2.35 16 23 C -0.14 -2.48 4.31 -26.73 -0.12 -2.60 16 24 C -0.10 -2.08 5.19 -26.73 -0.14 -2.22 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.67 5.66 -51.93 -0.29 0.38 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.51 5.10 -51.93 -0.27 1.24 16 31 H 0.08 1.36 6.57 -51.93 -0.34 1.02 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.21 5.30 -51.92 -0.28 0.94 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 38 H 0.08 1.68 5.10 -51.93 -0.27 1.41 16 39 H 0.04 0.63 5.99 -51.93 -0.31 0.32 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.05 1.08 7.00 -51.93 -0.36 0.71 16 LS Contribution 308.59 15.07 4.65 4.65 Total: -1.00 -27.72 308.59 -7.32 -35.03 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.71 Total: 0.82 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.60 Total: -15.35 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: -0.26 Total: -34.13 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.11 Total: -7.49 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.51 Total: 16.47 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.72 -7.32 -35.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.353 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds