Wall clock time and date at job start Tue Mar 31 2020 08:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47045 * 274.49094 * 3 2 1 5 5 H 1.48507 * 109.46935 * 34.48958 * 3 2 1 6 6 H 1.48496 * 109.47359 * 154.49111 * 3 2 1 7 7 C 1.37872 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00058 * 354.75699 * 7 2 1 9 9 C 1.50697 * 120.00063 * 174.74812 * 7 2 1 10 10 C 1.52997 * 109.47406 * 214.37043 * 9 7 2 11 11 C 1.52994 * 109.47341 * 300.00168 * 10 9 7 12 12 C 1.53000 * 109.47182 * 299.99990 * 11 10 9 13 13 N 1.46897 * 109.47403 * 179.97438 * 12 11 10 14 14 C 1.47897 * 111.00140 * 301.65001 * 13 12 11 15 15 C 1.53996 * 107.22983 * 214.25373 * 14 13 12 16 16 C 1.54598 * 105.13620 * 1.12451 * 15 14 13 17 17 C 1.48809 * 111.18648 * 184.31081 * 13 12 11 18 18 H 1.08997 * 110.52037 * 41.07268 * 17 13 12 19 19 C 1.53001 * 110.70081 * 278.02310 * 17 13 12 20 20 F 1.39910 * 109.47176 * 310.50556 * 19 17 13 21 21 F 1.39898 * 109.46988 * 70.49774 * 19 17 13 22 22 F 1.39895 * 109.47547 * 190.50536 * 19 17 13 23 23 C 1.52994 * 109.47309 * 59.99649 * 12 11 10 24 24 C 1.53002 * 109.47342 * 94.37257 * 9 7 2 25 25 H 0.97002 * 119.99782 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47300 * 334.37226 * 9 7 2 27 27 H 1.09000 * 109.47506 * 179.97438 * 10 9 7 28 28 H 1.09004 * 109.47266 * 60.00250 * 10 9 7 29 29 H 1.08999 * 109.47516 * 179.97438 * 11 10 9 30 30 H 1.09001 * 109.47499 * 59.99801 * 11 10 9 31 31 H 1.09002 * 109.47204 * 299.99435 * 12 11 10 32 32 H 1.08998 * 109.92048 * 94.80092 * 14 13 12 33 33 H 1.09007 * 109.91773 * 333.70130 * 14 13 12 34 34 H 1.08999 * 110.31354 * 120.03447 * 15 14 13 35 35 H 1.09000 * 110.31256 * 242.11281 * 15 14 13 36 36 H 1.09003 * 110.72709 * 140.31229 * 16 15 14 37 37 H 1.09004 * 110.72479 * 263.42132 * 16 15 14 38 38 H 1.09002 * 109.47162 * 59.99760 * 23 12 11 39 39 H 1.08999 * 109.47508 * 180.02562 * 23 12 11 40 40 H 1.08995 * 109.47671 * 180.02562 * 24 9 7 41 41 H 1.09005 * 109.46741 * 300.00488 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4017 2.1013 -1.3958 5 1 1.4972 2.6234 0.7928 6 1 3.5909 1.4147 0.6029 7 6 2.0046 -1.1940 0.0005 8 1 1.4680 -2.1273 0.0864 9 6 3.5068 -1.1968 -0.1189 10 6 3.9529 -2.4247 -0.9152 11 6 3.4964 -3.6941 -0.1935 12 6 4.1189 -3.7384 1.2034 13 7 3.6801 -4.9569 1.8967 14 6 2.2055 -5.0074 1.9977 15 6 1.8630 -5.6881 3.3359 16 6 3.2279 -5.9915 3.9955 17 6 4.1805 -4.9883 3.2978 18 1 4.1012 -4.0016 3.7540 19 6 5.6243 -5.4923 3.3453 20 9 5.7302 -6.6747 2.6049 21 9 6.4745 -4.5237 2.8010 22 9 5.9886 -5.7394 4.6732 23 6 3.6729 -2.5105 1.9998 24 6 4.1295 -1.2411 1.2780 25 1 -0.4850 0.8401 -0.0004 26 1 3.8321 -0.2924 -0.6332 27 1 5.0394 -2.4264 -1.0020 28 1 3.5094 -2.3931 -1.9105 29 1 3.8138 -4.5689 -0.7610 30 1 2.4098 -3.6922 -0.1071 31 1 5.2055 -3.7404 1.1171 32 1 1.7963 -5.5876 1.1706 33 1 1.7972 -3.9969 1.9800 34 1 1.2805 -5.0148 3.9647 35 1 1.3122 -6.6122 3.1604 36 1 3.1883 -5.8034 5.0684 37 1 3.5325 -7.0190 3.7965 38 1 2.5863 -2.5085 2.0861 39 1 4.1168 -2.5418 2.9948 40 1 5.2160 -1.2426 1.1916 41 1 3.8116 -0.3663 1.8453 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173330953.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:47:18 Heat of formation + Delta-G solvation = -178.215406 kcal Electronic energy + Delta-G solvation = -25655.401981 eV Core-core repulsion = 21732.661280 eV Total energy + Delta-G solvation = -3922.740701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 5.80 seconds Orbital eigenvalues (eV) -51.01897 -48.57350 -48.45895 -41.10035 -38.34253 -34.63233 -33.07683 -31.78476 -31.13814 -29.45168 -26.51528 -26.04189 -23.78640 -23.34078 -21.89595 -21.35811 -20.22323 -19.51752 -19.14154 -18.47839 -18.04756 -17.33836 -16.57864 -15.93736 -15.55870 -15.44015 -15.37854 -15.08380 -15.00594 -14.91117 -14.70999 -14.64487 -14.50902 -14.39817 -14.10782 -13.90225 -13.37497 -13.03546 -12.91984 -12.86458 -12.49638 -12.31254 -12.26146 -12.08574 -11.89341 -11.79871 -11.59888 -11.45603 -10.95906 -10.90057 -10.63418 -10.49372 -9.43141 -8.20156 -6.19284 1.34030 1.38709 1.48172 1.74882 2.40019 2.57379 2.89443 3.00155 3.16320 3.45909 3.66748 3.76333 3.90670 4.02148 4.06012 4.22001 4.28201 4.46953 4.55862 4.59161 4.64132 4.74637 4.79948 4.85660 4.88566 4.90203 5.00290 5.07030 5.17432 5.19966 5.22620 5.39686 5.44680 5.45670 5.53812 5.76153 5.83739 5.89519 5.95297 6.45533 6.87830 7.45157 8.95710 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.023602 B = 0.005297 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.032059 B = 5284.269725 C = 5649.953702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.009 3.991 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.242 1.242 7 C -0.485 4.485 8 H 0.047 0.953 9 C 0.002 3.998 10 C -0.098 4.098 11 C -0.094 4.094 12 C 0.081 3.919 13 N -0.501 5.501 14 C 0.030 3.970 15 C -0.120 4.120 16 C -0.107 4.107 17 C 0.002 3.998 18 H 0.106 0.894 19 C 0.468 3.532 20 F -0.178 7.178 21 F -0.191 7.191 22 F -0.181 7.181 23 C -0.132 4.132 24 C -0.103 4.103 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.839 -11.903 8.690 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.187 4.187 3 Si 0.753 3.247 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.165 1.165 7 C -0.523 4.523 8 H 0.065 0.935 9 C -0.017 4.017 10 C -0.136 4.136 11 C -0.131 4.131 12 C -0.027 4.027 13 N -0.223 5.223 14 C -0.097 4.097 15 C -0.158 4.158 16 C -0.145 4.145 17 C -0.108 4.108 18 H 0.123 0.877 19 C 0.413 3.587 20 F -0.160 7.160 21 F -0.172 7.172 22 F -0.163 7.163 23 C -0.171 4.171 24 C -0.142 4.142 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.930 -12.258 8.371 17.858 hybrid contribution -0.233 1.872 0.132 1.892 sum 9.697 -10.385 8.503 16.559 Atomic orbital electron populations 1.70056 1.07969 1.27334 1.54050 1.25808 0.95229 1.02377 0.95255 0.86044 0.80272 0.80102 0.78296 1.20409 1.22205 1.16531 1.21254 0.91125 0.92853 1.47095 0.93467 1.19232 0.94340 0.94940 0.93137 1.21389 0.99108 0.94832 0.98273 1.21365 1.00299 0.97211 0.94255 1.21866 0.99801 0.86779 0.94227 1.64940 1.09484 1.36772 1.11147 1.22930 0.86785 1.00592 0.99425 1.22370 0.96974 1.01895 0.94593 1.22531 0.93045 0.98385 1.00507 1.24183 0.89855 1.02737 0.94013 0.87651 1.20359 0.89740 0.75527 0.73067 1.93166 1.96786 1.48713 1.77301 1.93153 1.74374 1.63675 1.86044 1.93164 1.93167 1.94409 1.35534 1.21978 1.01435 0.95624 0.98014 1.21581 0.98240 0.96566 0.97807 0.93142 0.95801 0.92133 0.93354 0.91806 0.92919 0.89777 0.90105 0.93666 0.90478 0.88839 0.87783 0.89334 0.92263 0.92263 0.92797 0.94512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 2 C 0.01 0.51 5.47 84.65 0.46 0.97 16 3 Si 0.93 43.47 26.52 68.60 1.82 45.29 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.24 -10.45 6.03 99.48 0.60 -9.85 16 7 C -0.49 -25.54 7.31 25.60 0.19 -25.35 16 8 H 0.05 2.72 6.27 -2.91 -0.02 2.70 16 9 C 0.00 0.11 2.13 -11.54 -0.02 0.08 16 10 C -0.10 -3.67 5.44 30.59 0.17 -3.50 16 11 C -0.09 -3.28 4.85 30.59 0.15 -3.14 16 12 C 0.08 2.59 2.15 44.91 0.10 2.68 16 13 N -0.50 -13.95 4.82 -832.57 -4.01 -17.96 16 14 C 0.03 0.82 5.14 86.45 0.44 1.27 16 15 C -0.12 -2.42 6.93 31.47 0.22 -2.20 16 16 C -0.11 -1.97 6.16 31.80 0.20 -1.78 16 17 C 0.00 0.05 2.19 45.21 0.10 0.15 16 18 H 0.11 2.51 5.51 -2.39 -0.01 2.50 16 19 C 0.47 11.45 2.89 71.98 0.21 11.65 16 20 F -0.18 -4.66 16.67 44.97 0.75 -3.91 16 21 F -0.19 -5.19 15.57 44.97 0.70 -4.49 16 22 F -0.18 -4.10 16.98 44.97 0.76 -3.33 16 23 C -0.13 -4.59 4.31 30.59 0.13 -4.46 16 24 C -0.10 -3.99 5.19 30.60 0.16 -3.83 16 25 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 26 H 0.02 1.06 5.66 -2.38 -0.01 1.05 16 27 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.11 5.10 -2.39 -0.01 2.10 16 31 H 0.08 2.65 6.57 -2.39 -0.02 2.63 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.52 5.30 -2.38 -0.01 1.51 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.57 7.72 -2.38 -0.02 1.55 16 38 H 0.06 2.38 5.10 -2.39 -0.01 2.37 16 39 H 0.06 1.81 5.99 -2.39 -0.01 1.79 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.04 1.50 7.00 -2.38 -0.02 1.48 16 Total: -1.00 -60.12 308.59 3.75 -56.37 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.94 Total: 13.10 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 2.49 Total: -27.45 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -3.71 Total: -75.58 kcal Atomic # 9 Polarization: -13.95 SS G_CDS: 2.21 Total: -11.73 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.82 Total: 45.29 kcal Total: -60.12 3.75 -56.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330953.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.845 kcal (2) G-P(sol) polarization free energy of solvation -60.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.80 seconds