Wall clock time and date at job start Tue Mar 31 2020 07:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48495 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46825 * 299.99744 * 3 2 1 6 6 H 1.48497 * 109.47402 * 59.99390 * 3 2 1 7 7 C 1.37873 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00409 * 0.27245 * 7 2 1 10 10 C 1.52998 * 109.47377 * 299.73133 * 9 7 2 11 11 C 1.53003 * 109.47247 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47158 * 59.99841 * 11 10 9 13 13 N 1.46896 * 109.47161 * 180.02562 * 12 11 10 14 14 C 1.48559 * 111.00073 * 53.66497 * 13 12 11 15 15 C 1.54381 * 104.59471 * 200.96080 * 14 13 12 16 16 F 1.39895 * 110.32714 * 264.95766 * 15 14 13 17 17 F 1.39899 * 110.41104 * 142.79315 * 15 14 13 18 18 C 1.54260 * 105.05981 * 23.85446 * 15 14 13 19 19 C 1.48568 * 110.99704 * 298.24749 * 13 12 11 20 20 H 1.09001 * 110.40996 * 40.26493 * 19 13 12 21 21 C 1.52990 * 110.41350 * 277.82170 * 19 13 12 22 22 F 1.39899 * 109.47470 * 59.99851 * 21 19 13 23 23 C 1.53002 * 109.46911 * 299.99744 * 12 11 10 24 24 C 1.52995 * 109.47573 * 179.72353 * 9 7 2 25 25 H 0.96999 * 120.00601 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46837 * 59.72509 * 9 7 2 27 27 H 1.09006 * 109.46627 * 299.99505 * 10 9 7 28 28 H 1.09001 * 109.47725 * 59.99134 * 10 9 7 29 29 H 1.08992 * 109.47118 * 299.99506 * 11 10 9 30 30 H 1.09002 * 109.47246 * 179.97438 * 11 10 9 31 31 H 1.08992 * 109.47380 * 59.99825 * 12 11 10 32 32 H 1.08998 * 110.41289 * 319.74005 * 14 13 12 33 33 H 1.08999 * 110.40833 * 82.18899 * 14 13 12 34 34 H 1.08992 * 110.32566 * 241.09953 * 18 15 14 35 35 H 1.09006 * 110.40974 * 118.93580 * 18 15 14 36 36 H 1.09005 * 109.47283 * 180.02562 * 21 19 13 37 37 H 1.09008 * 109.47039 * 299.99902 * 21 19 13 38 38 H 1.08999 * 109.47517 * 300.00169 * 23 12 11 39 39 H 1.09000 * 109.47000 * 180.02562 * 23 12 11 40 40 H 1.09002 * 109.47121 * 300.00588 * 24 9 7 41 41 H 1.09006 * 109.46912 * 60.00201 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0051 10 6 0.3714 -2.5856 1.2437 11 6 -0.3940 -3.9104 1.2376 12 6 0.5999 -5.0737 1.2324 13 7 -0.1350 -6.3456 1.2259 14 6 -1.1125 -6.3901 0.1081 15 6 -2.1365 -7.4658 0.5294 16 9 -1.7983 -8.7035 -0.0281 17 9 -3.4260 -7.0926 0.1357 18 6 -2.0429 -7.5276 2.0679 19 6 -0.9701 -6.4841 2.4468 20 1 -1.4378 -5.5319 2.6975 21 6 -0.1244 -6.9890 3.6174 22 9 0.9083 -6.0805 3.8727 23 6 1.4795 -4.9872 -0.0165 24 6 2.2453 -3.6620 -0.0102 25 1 -0.4851 0.8400 0.0004 26 1 0.6244 -2.5530 -0.8954 27 1 0.9981 -2.5318 2.1340 28 1 -0.3370 -1.7572 1.2474 29 1 -1.0207 -3.9639 0.3475 30 1 -1.0204 -3.9723 2.1276 31 1 1.2265 -5.0202 2.1225 32 1 -1.6024 -5.4233 -0.0072 33 1 -0.6170 -6.6792 -0.8187 34 1 -1.7335 -8.5223 2.3887 35 1 -3.0007 -7.2663 2.5179 36 1 -0.7515 -7.0854 4.5038 37 1 0.3005 -7.9609 3.3660 38 1 0.8528 -5.0406 -0.9068 39 1 2.1872 -5.8161 -0.0206 40 1 2.8719 -3.6004 -0.8999 41 1 2.8720 -3.6081 0.8801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173331792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:28 Heat of formation + Delta-G solvation = -160.109246 kcal Electronic energy + Delta-G solvation = -25066.500209 eV Core-core repulsion = 21144.544650 eV Total energy + Delta-G solvation = -3921.955559 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.98524 -47.60698 -47.09058 -39.61818 -36.59632 -33.10896 -31.32441 -30.31841 -29.70186 -27.90124 -25.79027 -24.23926 -22.35066 -21.91987 -20.92985 -19.95207 -18.61450 -17.76524 -17.12912 -16.47679 -16.31902 -15.96044 -15.49642 -15.14886 -14.90766 -14.48696 -14.39880 -13.81649 -13.63961 -13.46781 -13.41355 -13.17999 -12.89547 -12.81500 -12.34290 -12.18490 -11.88496 -11.50700 -11.34553 -11.17777 -11.09323 -11.00099 -10.78048 -10.70512 -10.38847 -10.22681 -10.08233 -9.98581 -9.33729 -9.06534 -8.69746 -8.38211 -8.20629 -5.97637 -4.03391 3.29757 3.38088 3.42130 3.43222 3.70032 3.75249 4.01681 4.40166 4.45011 4.60922 4.80924 4.82881 4.95451 5.13152 5.25056 5.31545 5.34389 5.38619 5.51199 5.57686 5.62970 5.82057 5.87635 6.06478 6.14321 6.29627 6.33178 6.52815 6.61997 6.69659 6.80115 6.98351 6.99210 7.16535 7.26377 7.49413 7.75754 8.01847 8.14816 8.48349 9.01135 9.61486 11.08027 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.004450 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.851672 B = 6291.284132 C = 6725.364829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.888 3.112 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.103 4.103 11 C -0.149 4.149 12 C 0.068 3.932 13 N -0.492 5.492 14 C -0.012 4.012 15 C 0.283 3.717 16 F -0.192 7.192 17 F -0.196 7.196 18 C -0.155 4.155 19 C 0.018 3.982 20 H 0.084 0.916 21 C 0.083 3.917 22 F -0.207 7.207 23 C -0.104 4.104 24 C -0.108 4.108 25 H 0.258 0.742 26 H 0.023 0.977 27 H 0.035 0.965 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.681 -15.764 5.425 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.142 4.142 11 C -0.188 4.188 12 C -0.039 4.039 13 N -0.215 5.215 14 C -0.141 4.141 15 C 0.246 3.754 16 F -0.173 7.173 17 F -0.177 7.177 18 C -0.193 4.193 19 C -0.091 4.091 20 H 0.102 0.898 21 C 0.027 3.973 22 F -0.188 7.188 23 C -0.142 4.142 24 C -0.146 4.146 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.404 -16.071 5.367 17.506 hybrid contribution -0.331 1.558 -0.074 1.594 sum -4.735 -14.513 5.293 16.157 Atomic orbital electron populations 1.69880 1.05869 1.26163 1.51226 1.24965 0.94824 0.99014 0.95229 0.86594 0.80228 0.84028 0.77503 1.19808 1.21120 1.21115 1.21276 0.92954 0.90728 1.49900 0.92706 1.18661 0.92630 0.91670 0.94055 1.21535 0.99469 0.94137 0.99014 1.22301 0.98466 0.98231 0.99796 1.22201 0.95434 0.85148 1.01157 1.65779 1.20207 1.35731 0.99787 1.24201 0.93515 0.98227 0.98121 1.21651 0.79492 0.81333 0.92904 1.93019 1.92119 1.44840 1.87278 1.93026 1.40691 1.91385 1.92579 1.23290 1.01262 1.02327 0.92450 1.23358 0.93371 0.99099 0.93259 0.89809 1.21903 0.86885 0.91719 0.96777 1.92759 1.61099 1.69789 1.95132 1.21560 0.98047 0.98677 0.95886 1.21625 0.98635 0.93972 1.00348 0.93187 0.95887 0.94607 0.89063 0.92507 0.93793 0.88070 0.89058 0.87381 0.87866 0.88040 0.90450 0.90051 0.92929 0.92713 0.93226 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.26 11.33 55.43 0.63 -24.63 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.51 -13.88 8.56 -34.44 -0.29 -14.18 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.17 2.10 -91.78 -0.19 0.98 16 10 C -0.10 -2.35 4.98 -26.73 -0.13 -2.48 16 11 C -0.15 -2.73 4.46 -26.73 -0.12 -2.85 16 12 C 0.07 1.11 2.14 -67.71 -0.14 0.97 16 13 N -0.49 -6.77 5.07 -214.25 -1.09 -7.85 16 14 C -0.01 -0.16 5.00 -2.18 -0.01 -0.17 16 15 C 0.28 3.43 2.70 -25.35 -0.07 3.36 16 16 F -0.19 -2.50 17.09 2.25 0.04 -2.46 16 17 F -0.20 -2.58 17.10 2.25 0.04 -2.54 16 18 C -0.15 -1.47 6.24 -25.35 -0.16 -1.63 16 19 C 0.02 0.21 2.62 -66.07 -0.17 0.03 16 20 H 0.08 1.03 5.75 -51.93 -0.30 0.73 16 21 C 0.08 0.83 7.15 37.15 0.27 1.10 16 22 F -0.21 -2.88 15.00 2.25 0.03 -2.85 16 23 C -0.10 -1.79 5.20 -26.70 -0.14 -1.93 16 24 C -0.11 -2.20 5.15 -26.71 -0.14 -2.34 16 25 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 2.36 6.08 -51.93 -0.32 2.05 16 29 H 0.06 1.06 5.93 -51.93 -0.31 0.75 16 30 H 0.04 0.75 6.11 -51.93 -0.32 0.43 16 31 H 0.10 1.78 5.90 -51.93 -0.31 1.47 16 32 H 0.09 1.31 5.35 -51.93 -0.28 1.03 16 33 H 0.11 1.43 7.69 -51.93 -0.40 1.03 16 34 H 0.10 0.81 7.72 -51.93 -0.40 0.41 16 35 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.72 8.09 -51.92 -0.42 0.30 16 38 H 0.05 0.90 7.12 -51.93 -0.37 0.53 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 316.74 15.07 4.77 4.77 Total: -1.00 -28.64 316.74 -7.91 -36.54 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.91 Total: 0.40 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -1.40 Total: -17.58 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: -0.46 Total: -32.48 kcal Atomic # 9 Polarization: -7.97 SS G_CDS: 0.11 Total: -7.86 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.64 -7.91 -36.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.568 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds