Wall clock time and date at job start Tue Mar 31 2020 07:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48495 * 109.47011 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46825 * 299.99744 * 3 2 1 6 6 H 1.48497 * 109.47402 * 59.99390 * 3 2 1 7 7 C 1.37873 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00409 * 0.27245 * 7 2 1 10 10 C 1.52998 * 109.47377 * 299.73133 * 9 7 2 11 11 C 1.53003 * 109.47247 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47158 * 59.99841 * 11 10 9 13 13 N 1.46896 * 109.47161 * 180.02562 * 12 11 10 14 14 C 1.48559 * 111.00073 * 53.66497 * 13 12 11 15 15 C 1.54381 * 104.59471 * 200.96080 * 14 13 12 16 16 F 1.39895 * 110.32714 * 264.95766 * 15 14 13 17 17 F 1.39899 * 110.41104 * 142.79315 * 15 14 13 18 18 C 1.54260 * 105.05981 * 23.85446 * 15 14 13 19 19 C 1.48568 * 110.99704 * 298.24749 * 13 12 11 20 20 H 1.09001 * 110.40996 * 40.26493 * 19 13 12 21 21 C 1.52990 * 110.41350 * 277.82170 * 19 13 12 22 22 F 1.39899 * 109.47470 * 59.99851 * 21 19 13 23 23 C 1.53002 * 109.46911 * 299.99744 * 12 11 10 24 24 C 1.52995 * 109.47573 * 179.72353 * 9 7 2 25 25 H 0.96999 * 120.00601 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46837 * 59.72509 * 9 7 2 27 27 H 1.09006 * 109.46627 * 299.99505 * 10 9 7 28 28 H 1.09001 * 109.47725 * 59.99134 * 10 9 7 29 29 H 1.08992 * 109.47118 * 299.99506 * 11 10 9 30 30 H 1.09002 * 109.47246 * 179.97438 * 11 10 9 31 31 H 1.08992 * 109.47380 * 59.99825 * 12 11 10 32 32 H 1.08998 * 110.41289 * 319.74005 * 14 13 12 33 33 H 1.08999 * 110.40833 * 82.18899 * 14 13 12 34 34 H 1.08992 * 110.32566 * 241.09953 * 18 15 14 35 35 H 1.09006 * 110.40974 * 118.93580 * 18 15 14 36 36 H 1.09005 * 109.47283 * 180.02562 * 21 19 13 37 37 H 1.09008 * 109.47039 * 299.99902 * 21 19 13 38 38 H 1.08999 * 109.47517 * 300.00169 * 23 12 11 39 39 H 1.09000 * 109.47000 * 180.02562 * 23 12 11 40 40 H 1.09002 * 109.47121 * 300.00588 * 24 9 7 41 41 H 1.09006 * 109.46912 * 60.00201 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0051 10 6 0.3714 -2.5856 1.2437 11 6 -0.3940 -3.9104 1.2376 12 6 0.5999 -5.0737 1.2324 13 7 -0.1350 -6.3456 1.2259 14 6 -1.1125 -6.3901 0.1081 15 6 -2.1365 -7.4658 0.5294 16 9 -1.7983 -8.7035 -0.0281 17 9 -3.4260 -7.0926 0.1357 18 6 -2.0429 -7.5276 2.0679 19 6 -0.9701 -6.4841 2.4468 20 1 -1.4378 -5.5319 2.6975 21 6 -0.1244 -6.9890 3.6174 22 9 0.9083 -6.0805 3.8727 23 6 1.4795 -4.9872 -0.0165 24 6 2.2453 -3.6620 -0.0102 25 1 -0.4851 0.8400 0.0004 26 1 0.6244 -2.5530 -0.8954 27 1 0.9981 -2.5318 2.1340 28 1 -0.3370 -1.7572 1.2474 29 1 -1.0207 -3.9639 0.3475 30 1 -1.0204 -3.9723 2.1276 31 1 1.2265 -5.0202 2.1225 32 1 -1.6024 -5.4233 -0.0072 33 1 -0.6170 -6.6792 -0.8187 34 1 -1.7335 -8.5223 2.3887 35 1 -3.0007 -7.2663 2.5179 36 1 -0.7515 -7.0854 4.5038 37 1 0.3005 -7.9609 3.3660 38 1 0.8528 -5.0406 -0.9068 39 1 2.1872 -5.8161 -0.0206 40 1 2.8719 -3.6004 -0.8999 41 1 2.8720 -3.6081 0.8801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173331792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:27 Heat of formation + Delta-G solvation = -176.253516 kcal Electronic energy + Delta-G solvation = -25067.200277 eV Core-core repulsion = 21144.544650 eV Total energy + Delta-G solvation = -3922.655627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.96857 -48.52641 -48.08160 -40.85494 -38.06467 -34.88566 -32.76846 -31.56226 -31.13518 -29.38038 -26.87010 -25.93921 -23.72448 -23.20815 -22.17746 -21.30200 -20.14926 -18.76358 -18.42212 -18.11732 -17.37737 -16.92063 -16.69565 -16.43504 -16.13992 -15.87365 -15.45021 -15.12309 -14.98484 -14.79267 -14.58435 -14.42937 -14.34290 -14.12507 -13.80784 -13.33850 -13.20616 -13.00578 -12.89237 -12.62709 -12.52035 -12.26877 -12.15850 -12.01312 -11.90179 -11.79866 -11.63438 -11.48388 -11.07095 -10.81971 -10.59384 -10.38483 -9.52527 -8.08051 -6.21675 1.38658 1.41020 1.52066 2.41627 2.44356 2.77953 2.78735 3.11294 3.18511 3.49061 3.71790 3.81747 3.96264 4.00510 4.09282 4.21699 4.28909 4.40034 4.46237 4.50554 4.51765 4.58845 4.67739 4.74940 4.76007 4.84556 4.92749 5.03733 5.06243 5.18014 5.31912 5.33468 5.43028 5.53975 5.64499 5.72958 5.83936 6.03038 6.19063 6.41935 6.91035 7.46481 8.95859 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.022688 B = 0.004450 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.851672 B = 6291.284132 C = 6725.364829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.046 3.954 10 C -0.095 4.095 11 C -0.138 4.138 12 C 0.081 3.919 13 N -0.489 5.489 14 C -0.016 4.016 15 C 0.282 3.718 16 F -0.196 7.196 17 F -0.203 7.203 18 C -0.142 4.142 19 C 0.014 3.986 20 H 0.075 0.925 21 C 0.076 3.924 22 F -0.231 7.231 23 C -0.097 4.097 24 C -0.101 4.101 25 H 0.259 0.741 26 H -0.009 1.009 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 -17.410 6.515 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.068 0.932 9 C 0.027 3.973 10 C -0.133 4.133 11 C -0.177 4.177 12 C -0.027 4.027 13 N -0.212 5.212 14 C -0.145 4.145 15 C 0.245 3.755 16 F -0.177 7.177 17 F -0.184 7.184 18 C -0.180 4.180 19 C -0.095 4.095 20 H 0.092 0.908 21 C 0.021 3.979 22 F -0.212 7.212 23 C -0.135 4.135 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.009 0.991 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.474 -17.733 6.458 19.395 hybrid contribution -0.337 2.069 -0.448 2.144 sum -4.811 -15.664 6.010 17.453 Atomic orbital electron populations 1.70018 1.07107 1.26882 1.51745 1.25714 0.95647 1.02263 0.94963 0.85622 0.79177 0.80023 0.77550 1.19215 1.20724 1.20649 1.21662 0.93020 0.92413 1.49995 0.93182 1.18629 0.93063 0.92350 0.93231 1.21300 0.98644 0.95606 0.97791 1.22149 0.98576 0.96639 1.00290 1.21914 0.94877 0.85641 1.00252 1.65746 1.20976 1.33259 1.01183 1.24191 0.93865 0.98281 0.98172 1.21734 0.78630 0.80535 0.94606 1.93012 1.92126 1.44965 1.87604 1.93015 1.41088 1.91459 1.92850 1.23305 1.01691 1.03009 0.90010 1.23500 0.93782 0.99547 0.92651 0.90760 1.22214 0.86608 0.91508 0.97524 1.92711 1.62387 1.70828 1.95272 1.21467 0.98284 0.97267 0.96456 1.21487 0.97934 0.94296 1.00169 0.93179 0.99055 0.95535 0.92505 0.93063 0.92304 0.88676 0.90382 0.87580 0.85417 0.85889 0.86988 0.88449 0.93004 0.90741 0.93387 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.41 11.33 21.45 0.24 -53.17 16 2 C 0.01 0.69 5.31 84.65 0.45 1.14 16 3 Si 0.95 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 7 C -0.53 -29.73 8.56 25.60 0.22 -29.51 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.05 2.29 2.10 -11.54 -0.02 2.27 16 10 C -0.09 -4.46 4.98 30.59 0.15 -4.31 16 11 C -0.14 -5.07 4.46 30.60 0.14 -4.93 16 12 C 0.08 2.60 2.14 44.92 0.10 2.69 16 13 N -0.49 -12.53 5.07 -831.74 -4.22 -16.75 16 14 C -0.02 -0.42 5.00 86.45 0.43 0.02 16 15 C 0.28 6.21 2.70 31.49 0.08 6.29 16 16 F -0.20 -4.66 17.09 44.97 0.77 -3.90 16 17 F -0.20 -5.01 17.10 44.97 0.77 -4.24 16 18 C -0.14 -2.18 6.24 31.49 0.20 -1.99 16 19 C 0.01 0.28 2.62 45.06 0.12 0.40 16 20 H 0.07 1.65 5.75 -2.39 -0.01 1.64 16 21 C 0.08 1.27 7.15 71.98 0.51 1.79 16 22 F -0.23 -5.96 15.00 44.97 0.67 -5.29 16 23 C -0.10 -3.28 5.20 30.61 0.16 -3.12 16 24 C -0.10 -4.16 5.15 30.61 0.16 -4.00 16 25 H 0.26 14.35 8.31 -92.71 -0.77 13.57 16 26 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 27 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 3.06 6.08 -2.39 -0.01 3.05 16 29 H 0.05 1.94 5.93 -2.39 -0.01 1.93 16 30 H 0.06 1.97 6.11 -2.39 -0.01 1.96 16 31 H 0.10 3.24 5.90 -2.39 -0.01 3.23 16 32 H 0.08 2.22 5.35 -2.39 -0.01 2.21 16 33 H 0.11 2.72 7.69 -2.39 -0.02 2.70 16 34 H 0.13 1.40 7.72 -2.39 -0.02 1.38 16 35 H 0.12 1.43 8.05 -2.38 -0.02 1.41 16 36 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.10 1.34 8.09 -2.38 -0.02 1.32 16 38 H 0.05 1.76 7.12 -2.39 -0.02 1.74 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.94 16 41 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -63.16 316.74 3.99 -59.16 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.04 Total: 11.31 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 2.69 Total: -33.27 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: -3.97 Total: -69.91 kcal Atomic # 9 Polarization: -15.64 SS G_CDS: 2.21 Total: -13.43 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.16 3.99 -59.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173331792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.090 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds