Wall clock time and date at job start Tue Mar 31 2020 09:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00045 * 2 1 4 4 H 1.48509 * 109.46864 * 85.01011 * 3 2 1 5 5 H 1.48501 * 109.47379 * 205.00876 * 3 2 1 6 6 H 1.48504 * 109.47406 * 325.01256 * 3 2 1 7 7 C 1.37876 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00228 * 0.03055 * 7 2 1 10 10 C 1.52998 * 109.46919 * 295.14131 * 9 7 2 11 11 C 1.53000 * 109.46538 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47112 * 60.00288 * 11 10 9 13 13 N 1.46902 * 109.46954 * 179.97438 * 12 11 10 14 14 C 1.47893 * 111.00160 * 295.61599 * 13 12 11 15 15 C 1.53995 * 107.05808 * 214.15746 * 14 13 12 16 16 C 1.54593 * 105.13984 * 1.22364 * 15 14 13 17 17 H 1.08994 * 110.72928 * 263.42024 * 16 15 14 18 18 C 1.53007 * 110.72120 * 140.31341 * 16 15 14 19 19 F 1.39901 * 109.47103 * 61.45782 * 18 16 15 20 20 F 1.39899 * 109.46879 * 181.45374 * 18 16 15 21 21 F 1.39894 * 109.47478 * 301.45452 * 18 16 15 22 22 C 1.48537 * 110.99832 * 178.21993 * 13 12 11 23 23 C 1.53002 * 109.46824 * 299.99701 * 12 11 10 24 24 C 1.52998 * 109.46913 * 175.13625 * 9 7 2 25 25 H 0.96997 * 120.00439 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46507 * 55.13942 * 9 7 2 27 27 H 1.08996 * 109.47109 * 299.99255 * 10 9 7 28 28 H 1.09001 * 109.47132 * 59.99860 * 10 9 7 29 29 H 1.08994 * 109.47540 * 300.00093 * 11 10 9 30 30 H 1.09001 * 109.46930 * 179.97438 * 11 10 9 31 31 H 1.08994 * 109.47077 * 59.99522 * 12 11 10 32 32 H 1.09004 * 109.91776 * 333.50786 * 14 13 12 33 33 H 1.08997 * 109.91733 * 94.80487 * 14 13 12 34 34 H 1.09001 * 110.31005 * 120.14148 * 15 14 13 35 35 H 1.09000 * 110.30878 * 242.20664 * 15 14 13 36 36 H 1.09005 * 110.66511 * 278.15519 * 22 13 12 37 37 H 1.09000 * 110.66755 * 41.28185 * 22 13 12 38 38 H 1.09007 * 109.46996 * 299.99530 * 23 12 11 39 39 H 1.09001 * 109.47202 * 180.02562 * 23 12 11 40 40 H 1.09001 * 109.47445 * 300.00303 * 24 9 7 41 41 H 1.09003 * 109.46773 * 60.00691 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1072 1.3949 5 1 3.5954 1.4120 -0.5919 6 1 1.5033 2.6200 -0.8028 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0018 10 6 0.4646 -2.6354 1.3036 11 6 -0.3008 -3.9601 1.3019 12 6 0.6886 -5.1207 1.1791 13 7 -0.0463 -6.3927 1.1781 14 6 -0.7353 -6.6077 2.4689 15 6 -0.7115 -8.1222 2.7469 16 6 0.0566 -8.7393 1.5557 17 1 -0.6361 -9.1063 0.7985 18 6 0.9809 -9.8623 2.0309 19 9 0.2176 -10.8783 2.6160 20 9 1.6864 -10.3790 0.9390 21 9 1.8837 -9.3564 2.9723 22 6 0.8801 -7.5426 1.0171 23 6 1.4750 -4.9845 -0.1263 24 6 2.2408 -3.6594 -0.1245 25 1 -0.4850 0.8400 0.0004 26 1 0.5610 -2.5195 -0.8455 27 1 1.1546 -2.6151 2.1471 28 1 -0.2405 -1.8088 1.3909 29 1 -0.9907 -3.9801 0.4584 30 1 -0.8607 -4.0574 2.2321 31 1 1.3786 -5.1008 2.0226 32 1 -0.2108 -6.0762 3.2629 33 1 -1.7657 -6.2586 2.4025 34 1 -0.1888 -8.3272 3.6812 35 1 -1.7274 -8.5152 2.7884 36 1 1.1313 -7.6901 -0.0333 37 1 1.7815 -7.3967 1.6125 38 1 0.7850 -5.0045 -0.9699 39 1 2.1796 -5.8115 -0.2141 40 1 2.8010 -3.5623 -1.0545 41 1 2.9307 -3.6391 0.7192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173338167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:05 Heat of formation + Delta-G solvation = -174.652477 kcal Electronic energy + Delta-G solvation = -24360.531550 eV Core-core repulsion = 20437.945349 eV Total energy + Delta-G solvation = -3922.586201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -50.31594 -47.80347 -47.78861 -39.55790 -36.93169 -33.34966 -31.69213 -30.23661 -29.33602 -28.16934 -25.48850 -24.23058 -22.04045 -21.92314 -20.59623 -20.13810 -18.87175 -18.67738 -18.40338 -17.61868 -16.35450 -16.02922 -15.14246 -14.73398 -14.65266 -14.51109 -14.25421 -14.09477 -14.01453 -13.88966 -13.86413 -13.31301 -13.02286 -12.89751 -12.64435 -12.35570 -11.96491 -11.68478 -11.64081 -11.29147 -11.11957 -11.03272 -10.98380 -10.70870 -10.51586 -10.36767 -10.17479 -9.82541 -9.33019 -8.84725 -8.66953 -8.35853 -8.28223 -5.96853 -4.01441 2.50884 3.31150 3.38574 3.41922 3.49611 3.63664 3.80476 4.13640 4.43467 4.46091 4.50620 4.75642 5.04480 5.12518 5.32438 5.36285 5.39143 5.49230 5.53892 5.68385 5.77739 5.85468 5.91872 6.10660 6.27615 6.34449 6.41286 6.48076 6.63908 6.77361 6.91610 6.96129 7.10900 7.20393 7.31931 7.52008 7.77210 8.04004 8.12343 8.49444 9.03486 9.63012 11.10457 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.039795 B = 0.003288 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.444538 B = 8513.671451 C = 8839.103947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.287 1.287 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.104 4.104 11 C -0.105 4.105 12 C 0.082 3.918 13 N -0.509 5.509 14 C 0.038 3.962 15 C -0.123 4.123 16 C -0.142 4.142 17 H 0.127 0.873 18 C 0.458 3.542 19 F -0.184 7.184 20 F -0.182 7.182 21 F -0.182 7.182 22 C 0.043 3.957 23 C -0.108 4.108 24 C -0.107 4.107 25 H 0.259 0.741 26 H 0.030 0.970 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.049 0.951 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.497 -18.789 4.861 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.200 1.200 6 H -0.213 1.213 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.143 4.143 11 C -0.143 4.143 12 C -0.025 4.025 13 N -0.233 5.233 14 C -0.090 4.090 15 C -0.162 4.162 16 C -0.162 4.162 17 H 0.145 0.855 18 C 0.404 3.596 19 F -0.166 7.166 20 F -0.164 7.164 21 F -0.163 7.163 22 C -0.085 4.085 23 C -0.146 4.146 24 C -0.146 4.146 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.999 -18.641 4.441 19.266 hybrid contribution 1.207 0.659 0.830 1.606 sum -0.792 -17.982 5.270 18.755 Atomic orbital electron populations 1.69911 1.05822 1.26286 1.50907 1.24963 0.94819 0.98939 0.95250 0.86660 0.80019 0.83906 0.77885 1.20868 1.19954 1.21276 1.21242 0.92852 0.90800 1.50242 0.92875 1.18665 0.93008 0.91393 0.93970 1.21572 0.99154 0.94407 0.99171 1.21651 0.97399 0.94902 1.00385 1.21963 0.94690 0.88074 0.97820 1.64913 1.25707 1.01785 1.30874 1.22842 1.00986 0.93805 0.91338 1.22480 1.01222 0.96184 0.96269 1.23456 0.97633 0.93676 1.01479 0.85501 1.20495 0.80388 0.83475 0.75281 1.93179 1.75475 1.62945 1.84993 1.93191 1.80420 1.88366 1.54408 1.93172 1.69711 1.86998 1.66466 1.23219 0.94472 0.88604 1.02244 1.21639 0.98138 0.98209 0.96634 1.21630 0.98621 0.94191 1.00120 0.93132 0.95192 0.94962 0.89709 0.91894 0.94058 0.94355 0.93032 0.89587 0.90557 0.89547 0.88629 0.92537 0.91632 0.93794 0.93175 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 11.68 55.43 0.65 -24.62 16 2 C 0.06 1.69 5.32 -17.82 -0.09 1.59 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -13.95 8.50 -34.44 -0.29 -14.24 16 8 H 0.05 1.44 7.75 -52.49 -0.41 1.03 16 9 C 0.05 1.17 2.01 -91.77 -0.18 0.98 16 10 C -0.10 -2.37 5.03 -26.73 -0.13 -2.50 16 11 C -0.11 -1.95 5.18 -26.73 -0.14 -2.09 16 12 C 0.08 1.34 1.64 -67.71 -0.11 1.23 16 13 N -0.51 -6.93 5.11 -222.50 -1.14 -8.07 16 14 C 0.04 0.44 5.52 -2.76 -0.02 0.43 16 15 C -0.12 -1.14 6.25 -25.38 -0.16 -1.30 16 16 C -0.14 -1.37 3.07 -88.76 -0.27 -1.64 16 17 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 18 C 0.46 4.66 2.69 37.16 0.10 4.76 16 19 F -0.18 -1.89 17.12 2.25 0.04 -1.85 16 20 F -0.18 -1.98 17.20 2.25 0.04 -1.94 16 21 F -0.18 -2.06 15.78 2.25 0.04 -2.03 16 22 C 0.04 0.50 4.63 -1.90 -0.01 0.49 16 23 C -0.11 -1.85 5.02 -26.71 -0.13 -1.98 16 24 C -0.11 -2.18 5.15 -26.71 -0.14 -2.32 16 25 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 2.18 6.47 -51.93 -0.34 1.84 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.04 0.70 7.32 -51.93 -0.38 0.32 16 31 H 0.04 0.65 7.97 -51.93 -0.41 0.23 16 32 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.69 7.35 -51.93 -0.38 0.31 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 1.09 7.66 -51.93 -0.40 0.69 16 37 H 0.06 0.69 7.23 -51.93 -0.38 0.32 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.04 0.66 6.90 -51.93 -0.36 0.30 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -27.68 325.62 -8.46 -36.14 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -6.39 Total: -2.11 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.58 Total: -16.60 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: -0.49 Total: -32.69 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.68 -8.46 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.513 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds