Wall clock time and date at job start Tue Mar 31 2020 09:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00045 * 2 1 4 4 H 1.48509 * 109.46864 * 85.01011 * 3 2 1 5 5 H 1.48501 * 109.47379 * 205.00876 * 3 2 1 6 6 H 1.48504 * 109.47406 * 325.01256 * 3 2 1 7 7 C 1.37876 * 119.99870 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00161 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00228 * 0.03055 * 7 2 1 10 10 C 1.52998 * 109.46919 * 295.14131 * 9 7 2 11 11 C 1.53000 * 109.46538 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47112 * 60.00288 * 11 10 9 13 13 N 1.46902 * 109.46954 * 179.97438 * 12 11 10 14 14 C 1.47893 * 111.00160 * 295.61599 * 13 12 11 15 15 C 1.53995 * 107.05808 * 214.15746 * 14 13 12 16 16 C 1.54593 * 105.13984 * 1.22364 * 15 14 13 17 17 H 1.08994 * 110.72928 * 263.42024 * 16 15 14 18 18 C 1.53007 * 110.72120 * 140.31341 * 16 15 14 19 19 F 1.39901 * 109.47103 * 61.45782 * 18 16 15 20 20 F 1.39899 * 109.46879 * 181.45374 * 18 16 15 21 21 F 1.39894 * 109.47478 * 301.45452 * 18 16 15 22 22 C 1.48537 * 110.99832 * 178.21993 * 13 12 11 23 23 C 1.53002 * 109.46824 * 299.99701 * 12 11 10 24 24 C 1.52998 * 109.46913 * 175.13625 * 9 7 2 25 25 H 0.96997 * 120.00439 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46507 * 55.13942 * 9 7 2 27 27 H 1.08996 * 109.47109 * 299.99255 * 10 9 7 28 28 H 1.09001 * 109.47132 * 59.99860 * 10 9 7 29 29 H 1.08994 * 109.47540 * 300.00093 * 11 10 9 30 30 H 1.09001 * 109.46930 * 179.97438 * 11 10 9 31 31 H 1.08994 * 109.47077 * 59.99522 * 12 11 10 32 32 H 1.09004 * 109.91776 * 333.50786 * 14 13 12 33 33 H 1.08997 * 109.91733 * 94.80487 * 14 13 12 34 34 H 1.09001 * 110.31005 * 120.14148 * 15 14 13 35 35 H 1.09000 * 110.30878 * 242.20664 * 15 14 13 36 36 H 1.09005 * 110.66511 * 278.15519 * 22 13 12 37 37 H 1.09000 * 110.66755 * 41.28185 * 22 13 12 38 38 H 1.09007 * 109.46996 * 299.99530 * 23 12 11 39 39 H 1.09001 * 109.47202 * 180.02562 * 23 12 11 40 40 H 1.09001 * 109.47445 * 300.00303 * 24 9 7 41 41 H 1.09003 * 109.46773 * 60.00691 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3911 2.1072 1.3949 5 1 3.5954 1.4120 -0.5919 6 1 1.5033 2.6200 -0.8028 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0018 10 6 0.4646 -2.6354 1.3036 11 6 -0.3008 -3.9601 1.3019 12 6 0.6886 -5.1207 1.1791 13 7 -0.0463 -6.3927 1.1781 14 6 -0.7353 -6.6077 2.4689 15 6 -0.7115 -8.1222 2.7469 16 6 0.0566 -8.7393 1.5557 17 1 -0.6361 -9.1063 0.7985 18 6 0.9809 -9.8623 2.0309 19 9 0.2176 -10.8783 2.6160 20 9 1.6864 -10.3790 0.9390 21 9 1.8837 -9.3564 2.9723 22 6 0.8801 -7.5426 1.0171 23 6 1.4750 -4.9845 -0.1263 24 6 2.2408 -3.6594 -0.1245 25 1 -0.4850 0.8400 0.0004 26 1 0.5610 -2.5195 -0.8455 27 1 1.1546 -2.6151 2.1471 28 1 -0.2405 -1.8088 1.3909 29 1 -0.9907 -3.9801 0.4584 30 1 -0.8607 -4.0574 2.2321 31 1 1.3786 -5.1008 2.0226 32 1 -0.2108 -6.0762 3.2629 33 1 -1.7657 -6.2586 2.4025 34 1 -0.1888 -8.3272 3.6812 35 1 -1.7274 -8.5152 2.7884 36 1 1.1313 -7.6901 -0.0333 37 1 1.7815 -7.3967 1.6125 38 1 0.7850 -5.0045 -0.9699 39 1 2.1796 -5.8115 -0.2141 40 1 2.8010 -3.5623 -1.0545 41 1 2.9307 -3.6391 0.7192 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173338167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:02 Heat of formation + Delta-G solvation = -189.402848 kcal Electronic energy + Delta-G solvation = -24361.171174 eV Core-core repulsion = 20437.945349 eV Total energy + Delta-G solvation = -3923.225825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.151 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -51.12107 -48.61796 -48.59289 -40.69287 -38.36961 -35.02670 -33.20112 -31.66422 -30.54006 -29.59092 -26.78202 -25.71891 -23.35313 -23.20964 -21.67394 -21.42754 -20.46985 -19.53709 -19.21401 -18.51114 -18.36259 -16.99250 -16.70247 -16.13689 -15.59130 -15.51661 -15.20994 -15.10342 -15.00165 -14.80839 -14.77155 -14.71911 -14.61898 -14.27064 -14.03805 -13.49678 -13.33302 -13.12961 -12.86245 -12.73468 -12.54732 -12.44100 -12.25683 -12.11427 -12.03014 -11.87142 -11.70014 -11.62581 -11.15632 -10.69496 -10.48683 -10.35419 -9.42735 -8.07346 -6.19350 1.40646 1.42067 1.52162 1.71318 2.44684 2.66328 2.82887 3.00195 3.13991 3.21391 3.60997 3.67691 3.96014 4.01682 4.05470 4.21864 4.31718 4.42069 4.55085 4.61303 4.69737 4.75152 4.81103 4.83682 4.87560 4.90685 4.96495 4.99387 5.12111 5.18445 5.33683 5.40545 5.49310 5.63254 5.69648 5.87850 6.04646 6.06594 6.19550 6.43470 6.94197 7.48419 8.98633 Molecular weight = 291.15amu Principal moments of inertia in cm(-1) A = 0.039795 B = 0.003288 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.444538 B = 8513.671451 C = 8839.103947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.269 1.269 6 H -0.284 1.284 7 C -0.535 4.535 8 H 0.049 0.951 9 C 0.044 3.956 10 C -0.096 4.096 11 C -0.094 4.094 12 C 0.093 3.907 13 N -0.515 5.515 14 C 0.034 3.966 15 C -0.117 4.117 16 C -0.133 4.133 17 H 0.145 0.855 18 C 0.461 3.539 19 F -0.183 7.183 20 F -0.186 7.186 21 F -0.190 7.190 22 C 0.039 3.961 23 C -0.100 4.100 24 C -0.101 4.101 25 H 0.259 0.741 26 H -0.004 1.004 27 H 0.027 0.973 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -20.349 5.356 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.135 4.135 11 C -0.132 4.132 12 C -0.016 4.016 13 N -0.238 5.238 14 C -0.094 4.094 15 C -0.155 4.155 16 C -0.153 4.153 17 H 0.163 0.837 18 C 0.407 3.593 19 F -0.165 7.165 20 F -0.168 7.168 21 F -0.171 7.171 22 C -0.089 4.089 23 C -0.138 4.138 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.014 0.986 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.789 -20.216 4.938 20.887 hybrid contribution 1.138 1.137 0.672 1.743 sum -0.651 -19.079 5.610 19.897 Atomic orbital electron populations 1.70044 1.07108 1.26992 1.51548 1.25716 0.95636 1.02232 0.95009 0.85680 0.78902 0.79879 0.78016 1.20291 1.19344 1.20963 1.21644 0.92962 0.92470 1.50213 0.93241 1.18637 0.93225 0.92184 0.93352 1.21350 0.98383 0.95679 0.98059 1.21454 0.97313 0.93762 1.00680 1.21684 0.93920 0.88773 0.97193 1.64827 1.25724 1.01037 1.32259 1.22926 1.00725 0.95638 0.90117 1.22465 1.02546 0.94258 0.96183 1.23421 0.97312 0.92631 1.01959 0.83749 1.20530 0.80211 0.83570 0.74991 1.93183 1.75380 1.62933 1.84969 1.93187 1.80564 1.88451 1.54581 1.93162 1.70068 1.87095 1.66786 1.23267 0.94297 0.88611 1.02704 1.21531 0.98302 0.97048 0.96898 1.21494 0.97914 0.94509 1.00002 0.93160 0.98609 0.95388 0.93245 0.93177 0.92403 0.94558 0.93637 0.89256 0.90185 0.87405 0.88116 0.92966 0.92293 0.91070 0.93416 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.48 11.68 21.45 0.25 -53.23 16 2 C 0.01 0.70 5.32 84.65 0.45 1.15 16 3 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.53 -29.71 8.50 25.60 0.22 -29.49 16 8 H 0.05 2.71 7.75 -2.91 -0.02 2.69 16 9 C 0.04 2.22 2.01 -11.54 -0.02 2.20 16 10 C -0.10 -4.47 5.03 30.59 0.15 -4.32 16 11 C -0.09 -3.48 5.18 30.60 0.16 -3.32 16 12 C 0.09 2.90 1.64 44.92 0.07 2.97 16 13 N -0.51 -12.93 5.11 -857.86 -4.38 -17.31 16 14 C 0.03 0.70 5.52 86.45 0.48 1.18 16 15 C -0.12 -1.79 6.25 31.47 0.20 -1.60 16 16 C -0.13 -2.15 3.07 -9.59 -0.03 -2.18 16 17 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 18 C 0.46 8.21 2.69 71.98 0.19 8.40 16 19 F -0.18 -3.27 17.12 44.97 0.77 -2.50 16 20 F -0.19 -3.61 17.20 44.97 0.77 -2.84 16 21 F -0.19 -3.88 15.78 44.97 0.71 -3.17 16 22 C 0.04 0.81 4.63 86.65 0.40 1.21 16 23 C -0.10 -3.29 5.02 30.61 0.15 -3.14 16 24 C -0.10 -4.10 5.15 30.61 0.16 -3.94 16 25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 26 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 2.63 6.47 -2.39 -0.02 2.62 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.93 7.32 -2.39 -0.02 1.91 16 31 H 0.04 1.17 7.97 -2.39 -0.02 1.15 16 32 H 0.05 1.02 7.65 -2.38 -0.02 1.00 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.21 7.35 -2.39 -0.02 1.19 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 2.00 7.66 -2.38 -0.02 1.98 16 37 H 0.05 1.15 7.23 -2.39 -0.02 1.14 16 38 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.07 1.98 6.90 -2.39 -0.02 1.96 16 40 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -60.28 325.62 3.74 -56.54 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: 1.01 Total: 7.43 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: 2.58 Total: -30.88 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: -4.13 Total: -70.54 kcal Atomic # 9 Polarization: -10.76 SS G_CDS: 2.25 Total: -8.51 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -60.28 3.74 -56.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173338167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.860 kcal (2) G-P(sol) polarization free energy of solvation -60.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds