Wall clock time and date at job start Tue Mar 31 2020 08:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00422 * 2 1 4 4 H 1.48497 * 109.47111 * 269.99862 * 3 2 1 5 5 H 1.48500 * 109.47256 * 149.99963 * 3 2 1 6 6 H 1.48500 * 109.46723 * 29.99454 * 3 2 1 7 7 C 1.37884 * 119.99816 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84815 * 180.28562 * 7 2 1 9 9 C 1.53671 * 108.30710 * 231.38065 * 8 7 2 10 10 C 1.52956 * 109.32297 * 305.14007 * 9 8 7 11 11 H 1.09002 * 109.41295 * 303.62112 * 10 9 8 12 12 N 1.46502 * 109.35127 * 183.79951 * 10 9 8 13 13 C 1.34775 * 119.99987 * 84.68489 * 12 10 9 14 14 O 1.21281 * 120.00376 * 355.05954 * 13 12 10 15 15 C 1.50705 * 119.99885 * 175.06005 * 13 12 10 16 16 C 1.50704 * 115.54986 * 65.74322 * 15 13 12 17 17 O 1.20761 * 119.99800 * 245.68864 * 16 15 13 18 18 C 1.50693 * 119.99887 * 65.68650 * 16 15 13 19 19 C 1.53001 * 117.50064 * 222.71474 * 18 16 15 20 20 C 1.53007 * 117.49580 * 154.05489 * 18 16 15 21 21 C 1.52997 * 117.49989 * 280.07225 * 15 13 12 22 22 C 1.52997 * 117.49634 * 211.41211 * 15 13 12 23 23 C 1.52963 * 109.81883 * 63.72670 * 10 9 8 24 24 C 1.51263 * 120.84902 * 0.02562 * 7 2 1 25 25 H 0.96999 * 120.00207 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.62629 * 351.03491 * 8 7 2 27 27 H 1.08992 * 109.63003 * 111.61175 * 8 7 2 28 28 H 1.08998 * 109.41180 * 185.24537 * 9 8 7 29 29 H 1.09006 * 109.62444 * 65.15735 * 9 8 7 30 30 H 0.97002 * 119.99723 * 264.67146 * 12 10 9 31 31 H 1.08998 * 115.55573 * 8.38878 * 18 16 15 32 32 H 1.09006 * 117.49499 * 359.97438 * 19 18 16 33 33 H 1.08997 * 117.50326 * 145.01961 * 19 18 16 34 34 H 1.09000 * 117.49640 * 214.97817 * 20 18 16 35 35 H 1.08997 * 117.49554 * 359.97438 * 20 18 16 36 36 H 1.09007 * 117.50098 * 359.97438 * 21 15 13 37 37 H 1.08996 * 117.50272 * 145.02181 * 21 15 13 38 38 H 1.09004 * 117.49844 * 214.97750 * 22 15 13 39 39 H 1.08997 * 117.50438 * 359.97438 * 22 15 13 40 40 H 1.09004 * 109.48037 * 176.42032 * 23 10 9 41 41 H 1.09004 * 109.49011 * 56.39151 * 23 10 9 42 42 H 1.09003 * 109.62828 * 248.38701 * 24 7 2 43 43 H 1.09002 * 109.62879 * 8.96426 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 3.5467 1.4400 0.7000 6 1 1.4466 2.6526 0.6999 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0070 9 6 3.9911 -2.1319 -1.1327 10 6 3.3401 -3.5077 -0.9809 11 1 3.5738 -3.9124 0.0039 12 7 3.8607 -4.4075 -2.0132 13 6 5.0182 -5.0676 -1.8105 14 8 5.6742 -4.8496 -0.8140 15 6 5.4973 -6.0767 -2.8221 16 6 5.8673 -5.5183 -4.1721 17 8 5.2203 -5.8171 -5.1470 18 6 7.0445 -4.5870 -4.3054 19 6 6.8757 -3.3588 -5.2019 20 6 7.7490 -4.5287 -5.6623 21 6 4.8675 -7.4704 -2.7826 22 6 6.3071 -7.2668 -2.3038 23 6 1.8232 -3.3833 -1.1327 24 6 1.2676 -2.5151 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 3.8988 -0.2076 -0.1493 27 1 3.8734 -1.6020 0.9622 28 1 5.0751 -2.2355 -1.0870 29 1 3.7070 -1.6991 -2.0920 30 1 3.3722 -4.5284 -2.8425 31 1 7.6610 -4.4779 -3.4132 32 1 5.9132 -3.2246 -5.6957 33 1 7.3814 -2.4417 -4.8998 34 1 8.8289 -4.3807 -5.6627 35 1 7.3612 -5.1642 -6.4584 36 1 4.1068 -7.6578 -2.0246 37 1 4.7211 -7.9837 -3.7329 38 1 7.1072 -7.6462 -2.9394 39 1 6.4937 -7.3198 -1.2312 40 1 1.3708 -4.3740 -1.0871 41 1 1.5903 -2.9212 -2.0921 42 1 1.4191 -3.0189 0.9552 43 1 0.2036 -2.3409 -0.1599 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187653429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:59:40 Heat of formation + Delta-G solvation = -37.519666 kcal Electronic energy + Delta-G solvation = -23771.061289 eV Core-core repulsion = 20396.278354 eV Total energy + Delta-G solvation = -3374.782935 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.81451 -39.27028 -37.18454 -36.43944 -35.74993 -33.73328 -31.57061 -29.67903 -27.77480 -26.74428 -23.83797 -22.69623 -22.62876 -21.97865 -21.50270 -20.68404 -19.63961 -18.89606 -17.75206 -16.32799 -15.93840 -15.81977 -15.78119 -14.97946 -14.66414 -14.46182 -14.07482 -13.89901 -13.44615 -13.16061 -12.90047 -12.73463 -12.28239 -12.09547 -11.86633 -11.81734 -11.73785 -11.33012 -11.04868 -10.98079 -10.84025 -10.81337 -10.77310 -10.59640 -10.19384 -10.01566 -9.94718 -9.70505 -9.53060 -9.03958 -8.87386 -8.48789 -8.36791 -6.12390 -4.03013 1.47301 2.64780 3.16211 3.25873 3.34430 3.35308 3.37551 3.58121 3.78032 4.37283 4.48130 4.53173 4.58893 4.68790 4.72036 4.82440 5.00294 5.16048 5.33948 5.35582 5.43621 5.57045 5.62852 5.70035 5.74070 5.82808 5.84861 5.85862 6.15442 6.42609 6.46000 6.68004 6.72452 6.86336 6.92857 7.06838 7.17114 7.19657 7.41557 7.62575 7.68410 7.72491 7.86756 8.35847 8.42018 8.94088 9.52779 10.97205 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019768 B = 0.004327 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.081657 B = 6469.271887 C = 7148.435346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.290 1.290 7 C -0.490 4.490 8 C -0.013 4.013 9 C -0.114 4.114 10 C 0.155 3.845 11 H 0.078 0.922 12 N -0.715 5.715 13 C 0.555 3.445 14 O -0.530 6.530 15 C -0.218 4.218 16 C 0.433 3.567 17 O -0.444 6.444 18 C -0.219 4.219 19 C -0.145 4.145 20 C -0.150 4.150 21 C -0.139 4.139 22 C -0.124 4.124 23 C -0.115 4.115 24 C 0.013 3.987 25 H 0.264 0.736 26 H 0.031 0.969 27 H 0.020 0.980 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.396 0.604 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.006 0.994 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 -11.655 -9.227 19.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.216 1.216 7 C -0.509 4.509 8 C -0.051 4.051 9 C -0.153 4.153 10 C 0.053 3.947 11 H 0.096 0.904 12 N -0.364 5.364 13 C 0.338 3.662 14 O -0.406 6.406 15 C -0.222 4.222 16 C 0.308 3.692 17 O -0.316 6.316 18 C -0.238 4.238 19 C -0.182 4.182 20 C -0.187 4.187 21 C -0.176 4.176 22 C -0.162 4.162 23 C -0.153 4.153 24 C -0.024 4.024 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.229 0.771 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.025 0.975 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.270 -11.533 -9.007 19.097 hybrid contribution 0.214 0.959 -0.342 1.041 sum 12.484 -10.574 -9.349 18.843 Atomic orbital electron populations 1.69827 1.06157 1.26976 1.49800 1.24838 0.94706 0.98582 0.94491 0.86663 0.80026 0.83273 0.78441 1.20442 1.19137 1.21618 1.20049 0.89387 0.91449 1.49984 1.19796 0.96544 0.95004 0.93764 1.21985 0.97352 0.95095 1.00833 1.21122 0.94613 0.89030 0.89966 0.90378 1.46419 1.23203 1.45216 1.21538 1.18856 0.81366 0.80426 0.85505 1.90707 1.55360 1.65259 1.29316 1.21987 1.10648 0.92306 0.97298 1.22567 0.82278 0.77407 0.86998 1.90390 1.49152 1.51992 1.40074 1.22747 1.01114 1.02195 0.97744 1.22994 1.02544 0.92046 1.00573 1.22987 0.99045 1.01900 0.94807 1.23097 0.96952 0.93423 1.04128 1.23017 0.94784 0.95233 1.03134 1.21940 0.92174 0.98707 1.02480 1.19328 0.98737 0.92772 0.91600 0.92570 0.95032 0.96185 0.94346 0.93037 0.77092 0.85340 0.87867 0.87422 0.87695 0.87857 0.87355 0.87247 0.87670 0.86702 0.94551 0.92660 0.97546 0.92033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 12.73 55.43 0.71 -24.61 16 2 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.89 21.07 27.28 -169.99 -4.64 16.44 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.18 6.45 56.52 0.36 -5.82 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.49 -12.76 5.51 -98.92 -0.54 -13.31 16 8 C -0.01 -0.31 5.62 -27.25 -0.15 -0.46 16 9 C -0.11 -2.38 5.51 -26.41 -0.15 -2.53 16 10 C 0.15 3.02 2.31 -67.97 -0.16 2.86 16 11 H 0.08 1.66 7.65 -51.93 -0.40 1.26 16 12 N -0.71 -11.63 5.07 -53.84 -0.27 -11.90 16 13 C 0.56 8.87 7.00 -10.98 -0.08 8.80 16 14 O -0.53 -10.20 16.32 5.56 0.09 -10.11 16 15 C -0.22 -2.72 2.21 -156.81 -0.35 -3.07 16 16 C 0.43 5.38 6.17 -29.04 -0.18 5.20 16 17 O -0.44 -6.24 16.78 6.00 0.10 -6.14 16 18 C -0.22 -2.39 6.10 -91.77 -0.56 -2.95 16 19 C -0.14 -1.46 10.13 -26.69 -0.27 -1.73 16 20 C -0.15 -1.33 10.05 -26.69 -0.27 -1.59 16 21 C -0.14 -1.43 9.76 -26.70 -0.26 -1.69 16 22 C -0.12 -1.25 9.76 -26.70 -0.26 -1.51 16 23 C -0.11 -2.33 5.40 -26.65 -0.14 -2.47 16 24 C 0.01 0.33 5.96 -27.51 -0.16 0.17 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.03 0.74 4.77 -51.93 -0.25 0.49 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.78 8.04 -51.93 -0.42 0.37 16 29 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.40 5.77 8.60 -40.82 -0.35 5.41 16 31 H 0.13 1.38 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.94 7.91 -51.93 -0.41 0.53 16 36 H 0.11 1.08 8.14 -51.92 -0.42 0.66 16 37 H 0.11 1.03 8.00 -51.93 -0.42 0.62 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.11 1.21 8.00 -51.93 -0.42 0.79 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.06 1.63 7.07 -51.93 -0.37 1.27 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -30.07 353.73 -9.16 -39.22 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.84 Total: 4.06 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.63 Total: -12.30 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.43 Total: -36.51 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.19 Total: -16.25 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.64 Total: 16.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.07 -9.16 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187653429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.703 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds